Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0004394

Physical Location & Seq

Genomic Coordinates Forward (+)

22618795 .. 22621166

Gene Structure 2372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g18800.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGTGTCGTTGAAGCTCCAGAAGCGGCTTGCCGCTAGCGTCCTCAAATGCGGACGTGGCAAGGTATGGCTCGACCCCAATGAAGGCAACGAAATCTCCATGGCCAATTCCAGGCAAAACATCAGGAAGCTTGTGAAGGATGGTTTTGTCATAAGGAAGCCAACAAAGATCCACTCCCGTTCTCGTGCTCGGAGAATGGCTGAGGCCAAGAGGAAGGGACGTCACTCTGGATATGGTAAGCGTAAGGGTACCAGGGAGGCAAGGCTGCCCACTAAGATACTCTGGATGAGGAGGATGAGGGTATTGAGGCGCTTGCTCCGTAAGTACCGAGAAGCTAAGAAAATTGACAAGCACATGTACCACGACATGTACATGAAGGTGAAGGGTAATTGTTTCAAGAACAAGCGTGTCTTGATGGAGAGTATTCACAAGTCAAAGGCTGAGAAGGCCAGAGAGAAGACTCTGGCAGACCAGTTTGAGTCCAAGCGTGCTAAAAATAAGGCTAGCAGAGAGAGGAAGTTGGCTCGCAGGGAGGAACGTTTGGCCCAAGGCCCTGGAGAGAGAGCACCTGCAGCTGCCGCAGCACCTGCACCTGCTGCAGCACCCCAACCATCTGCGGGAGGAGCGAAAAAAGCAAGGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L19e

Protein Analysis

215

Amino Acids

24.53

Weight (kDa)

11.48

Isoelectric Point (pI)

56.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L19e	PF01280	4 - 54	2.5e-26	Ribosomal protein L19e, N-terminal domain
Ribosomal_L19e_C	PF25476	56 - 146	5.3e-35	Ribosomal protein L19e, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02780 AT3G16780 AT4G02230
fragaria_vesca	FvH4_2g26110 FvH4_4g18800
malus_domestica	MD03G1292100.v1.1 MD11G1306300.v1.1 MD13G1162700.v1.1 MD16G1134200.v1.1 MD16G1162500.v1.1
prunus_persica	Prupe.1G130100_v2.0.a1 Prupe.1G130100_v2.0.a1 Prupe.8G265100_v2.0.a1
pyrus_communis	pycom03g23130 pycom11g26810 pycom13g13900 pycom16g13780
rosa_chinensis	RchiOBHm_Chr4g0423611 RchiOBHm_Chr6g0294481
rosa_laevigata	RLG00000011865
rosa_multiflora	Rmu_sc0000464.1_g000018
rosa_roxburghii	Rroxscaffold_5G00365820 Rroxscaffold_7G00173290
rosa_rugosa	Rorug04G0189000 Rorug06G0245000 Rorug06G0245100
rosa_samantha	Rh4AG248600 Rh4BG253900 Rh4CG261900 Rh6AG357600
rosa_wichuraiana	Rw4G021290 Rw6G031190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	3 cut(s)	577, 595, 601
AatII	GACGTC	1 cut(s)	223
Acc36I	ACCTGC	3 cut(s)	577, 595, 601
Acc65I	GGTACC	1 cut(s)	248
AccB1I	GGYRCC	1 cut(s)	248
AciI	CCGC	5 cut(s)	25, 33, 51, 579, 617
AclI	AACGTT	1 cut(s)	538
AclWI	GGATC	1 cut(s)	163
AcoI	YGGCCR	1 cut(s)	102
AcyI	GRCGYC	1 cut(s)	220
AfaI	GTAC	4 cut(s)	250, 326, 359, 371
AfiI	CCNNNNNNNGG	3 cut(s)	83, 111, 617
AflIII	ACRYGT	2 cut(s)	354, 366
AgsI	TTSAA	2 cut(s)	13, 397
AjiI	CACGTC	1 cut(s)	56
AjnI	CCWGG	3 cut(s)	110, 251, 553
AluBI	AGCT	4 cut(s)	16, 130, 335, 575
AluI	AGCT	4 cut(s)	16, 130, 335, 575
Alw21I	GWGCWC	2 cut(s)	190, 568
AlwI	GGATC	1 cut(s)	163
AlwNI	CAGNNNCTG	1 cut(s)	587
AoxI	GGCC	5 cut(s)	102, 204, 447, 543, 550
ApeKI	GCWGC	6 cut(s)	265, 572, 575, 581, 596, 599
Asp718I	GGTACC	1 cut(s)	248
AspLEI	GCGC	1 cut(s)	312
AspS9I	GGNCC	2 cut(s)	544, 551
AsuHPI	GGTGA	1 cut(s)	391
AsuNHI	GCTAGC	2 cut(s)	35, 503
BalI	TGGCCA	1 cut(s)	104
BanI	GGYRCC	1 cut(s)	248
BauI	CACGAG	1 cut(s)	183
BbsI	GAAGAC	1 cut(s)	464
Bbv12I	GWGCWC	2 cut(s)	190, 568
BbvCI	CCTCAGC	1 cut(s)	201
BbvI	GCAGC	6 cut(s)	252, 562, 583, 584, 593, 611
BccI	CCATC	3 cut(s)	134, 409, 619
BciT130I	CCWGG	3 cut(s)	112, 253, 555
BfaI	CTAG	2 cut(s)	36, 504
BfmI	CTRYAG	2 cut(s)	570, 597
BfoI	RGCGCY	1 cut(s)	313
BfuAI	ACCTGC	3 cut(s)	577, 595, 601
BisI	GCNGC	9 cut(s)	26, 33, 266, 573, 576, 579, 582, 597, 600
BlsI	GCNGC	9 cut(s)	27, 34, 267, 574, 577, 580, 583, 598, 601
Bme1390I	CCNGG	3 cut(s)	112, 253, 555
BmgBI	CACGTC	1 cut(s)	56
BmgT120I	GGNCC	2 cut(s)	544, 551
BmiI	GGNNCC	1 cut(s)	250
BmrFI	CCNGG	3 cut(s)	112, 253, 555
BmtI	GCTAGC	2 cut(s)	39, 507
BpiI	GAAGAC	1 cut(s)	464
BpmI	CTGGAG	1 cut(s)	576
Bpu10I	CCTNAGC	1 cut(s)	201
BsaHI	GRCGYC	1 cut(s)	220
BsaJI	CCNNGG	4 cut(s)	99, 252, 547, 553
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bsc4I	CCNNNNNNNGG	3 cut(s)	83, 111, 617
Bse1I	ACTGG	1 cut(s)	472
BseBI	CCWGG	3 cut(s)	112, 253, 555
BseDI	CCNNGG	4 cut(s)	99, 252, 547, 553
BseGI	GGATG	3 cut(s)	145, 291, 300
BseLI	CCNNNNNNNGG	3 cut(s)	83, 111, 617
BseMII	CTCAG	2 cut(s)	192, 432
BseNI	ACTGG	1 cut(s)	472
BseRI	GAGGAG	2 cut(s)	304, 636
BseXI	GCAGC	6 cut(s)	252, 562, 583, 584, 593, 611
BsgI	GTGCAG	1 cut(s)	573
BshFI	GGCC	5 cut(s)	104, 206, 449, 545, 552
BshNI	GGYRCC	1 cut(s)	248
BsiHKAI	GWGCWC	2 cut(s)	190, 568
BslFI	GGGAC	1 cut(s)	231
BslI	CCNNNNNNNGG	3 cut(s)	83, 111, 617
BsmFI	GGGAC	1 cut(s)	231
BsnI	GGCC	5 cut(s)	104, 206, 449, 545, 552
Bsp1286I	GDGCHC	2 cut(s)	190, 568
Bsp1407I	TGTACA	1 cut(s)	369
Bsp143I	GATC	1 cut(s)	168
Bsp19I	CCATGG	1 cut(s)	99
BspACI	CCGC	5 cut(s)	25, 33, 51, 579, 617
BspANI	GGCC	5 cut(s)	104, 206, 449, 545, 552
BspCNI	CTCAG	2 cut(s)	193, 433
BspLI	GGNNCC	1 cut(s)	250
BspMAI	CTGCAG	2 cut(s)	574, 601
BspMI	ACCTGC	3 cut(s)	577, 595, 601
BspOI	GCTAGC	2 cut(s)	39, 507
BspPI	GGATC	1 cut(s)	163
BspT107I	GGYRCC	1 cut(s)	248
BsrGI	TGTACA	1 cut(s)	369
BsrI	ACTGG	1 cut(s)	472
BssECI	CCNNGG	4 cut(s)	99, 252, 547, 553
BssMI	GATC	1 cut(s)	168
BssNI	GRCGYC	1 cut(s)	220
BssSI	CACGAG	1 cut(s)	183
BssT1I	CCWWGG	2 cut(s)	99, 547
Bst2BI	CACGAG	1 cut(s)	183
Bst2UI	CCWGG	3 cut(s)	112, 253, 555
BstACI	GRCGYC	1 cut(s)	220
BstAPI	GCANNNNNTGC	2 cut(s)	587, 596
BstAUI	TGTACA	1 cut(s)	369
BstC8I	GCNNGC	6 cut(s)	30, 37, 314, 489, 505, 526
BstDEI	CTNAG	4 cut(s)	201, 273, 336, 441
BstDSI	CCRYGG	1 cut(s)	99
BstF5I	GGATG	3 cut(s)	145, 291, 300
BstH2I	RGCGCY	1 cut(s)	313
BstHHI	GCGC	1 cut(s)	312
BstKTI	GATC	1 cut(s)	171
BstMBI	GATC	1 cut(s)	168
BstNI	CCWGG	3 cut(s)	112, 253, 555
BstNSI	RCATGY	2 cut(s)	358, 370
BstSCI	CCNGG	3 cut(s)	110, 251, 553
BstSFI	CTRYAG	2 cut(s)	570, 597
BstV1I	GCAGC	6 cut(s)	252, 562, 583, 584, 593, 611
BstV2I	GAAGAC	1 cut(s)	464
BstX2I	RGATCY	1 cut(s)	168
BstXI	CCANNNNNNTGG	1 cut(s)	554
BstYI	RGATCY	1 cut(s)	168
BsuRI	GGCC	5 cut(s)	104, 206, 449, 545, 552
BtgI	CCRYGG	1 cut(s)	99
BtrI	CACGTC	1 cut(s)	56
BtsCI	GGATG	3 cut(s)	145, 291, 300
BveI	ACCTGC	3 cut(s)	577, 595, 601
Cac8I	GCNNGC	6 cut(s)	30, 37, 314, 489, 505, 526
CaiI	CAGNNNCTG	1 cut(s)	587
CfoI	GCGC	1 cut(s)	312
Cfr13I	GGNCC	2 cut(s)	544, 551
CseI	GACGC	1 cut(s)	28
Csp6I	GTAC	4 cut(s)	249, 325, 358, 370
CviAII	CATG	4 cut(s)	100, 355, 367, 373
CviQI	GTAC	4 cut(s)	249, 325, 358, 370
DdeI	CTNAG	4 cut(s)	201, 273, 336, 441
DpnI	GATC	1 cut(s)	170
DpnII	GATC	1 cut(s)	168
EaeI	YGGCCR	1 cut(s)	102
Eco130I	CCWWGG	2 cut(s)	99, 547
EcoO109I	RGGNCCY	1 cut(s)	551
EcoRII	CCWGG	3 cut(s)	110, 251, 553
EcoT14I	CCWWGG	2 cut(s)	99, 547
ErhI	CCWWGG	2 cut(s)	99, 547
FaeI	CATG	4 cut(s)	103, 358, 370, 376
FaiI	YATR	7 cut(s)	67, 101, 152, 234, 356, 368, 374
FalI	AAGNNNNNCTT	2 cut(s)	395, 427
FaqI	GGGAC	1 cut(s)	231
FatI	CATG	4 cut(s)	99, 354, 366, 372
FauI	CCCGC	1 cut(s)	610
Fnu4HI	GCNGC	9 cut(s)	26, 33, 266, 573, 576, 579, 582, 597, 600
FokI	GGATG	3 cut(s)	152, 298, 307
Fsp4HI	GCNGC	9 cut(s)	26, 33, 266, 573, 576, 579, 582, 597, 600
FspBI	CTAG	2 cut(s)	36, 504
GlaI	GCGC	1 cut(s)	311
GluI	GCNGC	9 cut(s)	26, 33, 266, 573, 576, 579, 582, 597, 600
GsuI	CTGGAG	1 cut(s)	576
HaeII	RGCGCY	1 cut(s)	313
HaeIII	GGCC	5 cut(s)	104, 206, 449, 545, 552
HgaI	GACGC	1 cut(s)	28
HhaI	GCGC	1 cut(s)	312
Hin1I	GRCGYC	1 cut(s)	220
Hin1II	CATG	4 cut(s)	103, 358, 370, 376
Hin6I	GCGC	1 cut(s)	310
HinP1I	GCGC	1 cut(s)	310
HindIII	AAGCTT	1 cut(s)	128
HinfI	GANTC	2 cut(s)	460, 479
HphI	GGTGA	1 cut(s)	391
Hpy188I	TCNGA	1 cut(s)	192
Hpy188III	TCNNGA	6 cut(s)	19, 124, 228, 283, 397, 412
HpyAV	CCTTC	6 cut(s)	77, 130, 208, 370, 376, 439
HpyCH4IV	ACGT	3 cut(s)	55, 220, 538
HpyCH4V	TGCA	3 cut(s)	572, 590, 599
HpyF3I	CTNAG	4 cut(s)	201, 273, 336, 441
HpySE526I	ACGT	3 cut(s)	55, 220, 538
Hsp92I	GRCGYC	1 cut(s)	220
Hsp92II	CATG	4 cut(s)	103, 358, 370, 376
HspAI	GCGC	1 cut(s)	310
KpnI	GGTACC	1 cut(s)	252
Kzo9I	GATC	1 cut(s)	168
LmnI	GCTCC	3 cut(s)	21, 321, 623
Lsp1109I	GCAGC	6 cut(s)	252, 562, 583, 584, 593, 611
MaeI	CTAG	2 cut(s)	36, 504
MaeII	ACGT	3 cut(s)	55, 220, 538
MaeIII	GTNAC	1 cut(s)	221
MalI	GATC	1 cut(s)	170
MboI	GATC	1 cut(s)	168
MboII	GAAGA	1 cut(s)	469
MflI	RGATCY	1 cut(s)	168
MhlI	GDGCHC	2 cut(s)	190, 568
MlsI	TGGCCA	1 cut(s)	104
MluCI	AATT	3 cut(s)	106, 342, 388
MluNI	TGGCCA	1 cut(s)	104
MlyI	GAGTC	2 cut(s)	454, 488
Mox20I	TGGCCA	1 cut(s)	104
MscI	TGGCCA	1 cut(s)	104
MslI	CAYNNNNRTG	2 cut(s)	371, 377
Msp20I	TGGCCA	1 cut(s)	104
MspA1I	CMGCKG	1 cut(s)	575
MspR9I	CCNGG	3 cut(s)	112, 253, 555
MvaI	CCWGG	3 cut(s)	112, 253, 555
NcoI	CCATGG	1 cut(s)	99
NdeII	GATC	1 cut(s)	168
NheI	GCTAGC	2 cut(s)	35, 503
NlaIII	CATG	4 cut(s)	103, 358, 370, 376
NlaIV	GGNNCC	1 cut(s)	250
NmuCI	GTSAC	1 cut(s)	221
NspI	RCATGY	2 cut(s)	358, 370
PaqCI	CACCTGC	3 cut(s)	577, 595, 601
PciI	ACATGT	2 cut(s)	354, 366
PkrI	GCNGC	9 cut(s)	27, 34, 267, 574, 577, 580, 583, 598, 601
PleI	GAGTC	2 cut(s)	454, 487
PpsI	GAGTC	2 cut(s)	454, 487
PscI	ACATGT	2 cut(s)	354, 366
Psp1406I	AACGTT	1 cut(s)	538
Psp6I	CCWGG	3 cut(s)	110, 251, 553
PspGI	CCWGG	3 cut(s)	110, 251, 553
PspN4I	GGNNCC	1 cut(s)	250
PspPI	GGNCC	2 cut(s)	544, 551
PstI	CTGCAG	2 cut(s)	574, 601
PstNI	CAGNNNCTG	1 cut(s)	587
PsuI	RGATCY	1 cut(s)	168
PvuII	CAGCTG	1 cut(s)	575
RsaI	GTAC	4 cut(s)	250, 326, 359, 371
RsaNI	GTAC	4 cut(s)	249, 325, 358, 370
RseI	CAYNNNNRTG	2 cut(s)	371, 377
SatI	GCNGC	9 cut(s)	26, 33, 266, 573, 576, 579, 582, 597, 600
Sau3AI	GATC	1 cut(s)	168
Sau96I	GGNCC	2 cut(s)	544, 551
SchI	GAGTC	2 cut(s)	454, 488
ScrFI	CCNGG	3 cut(s)	112, 253, 555
SduI	GDGCHC	2 cut(s)	190, 568
SfcI	CTRYAG	2 cut(s)	570, 597
SmiMI	CAYNNNNRTG	2 cut(s)	371, 377
Sse9I	AATT	3 cut(s)	106, 342, 388
SsiI	CCGC	5 cut(s)	25, 33, 51, 579, 617
SspMI	CTAG	2 cut(s)	36, 504
StyD4I	CCNGG	3 cut(s)	110, 251, 553
StyI	CCWWGG	2 cut(s)	99, 547
TaiI	ACGT	3 cut(s)	58, 223, 541
TaqI	TCGA	1 cut(s)	72
TasI	AATT	3 cut(s)	106, 342, 388
TatI	WGTACW	1 cut(s)	369
TauI	GCSGC	3 cut(s)	28, 35, 581
TseFI	GTSAC	1 cut(s)	221
TseI	GCWGC	6 cut(s)	265, 572, 575, 581, 596, 599
Tsp45I	GTSAC	1 cut(s)	221
TspDTI	ATGAA	2 cut(s)	96, 389
TspGWI	ACGGA	1 cut(s)	308
XceI	RCATGY	2 cut(s)	358, 370
XspI	CTAG	2 cut(s)	36, 504
ZraI	GACGTC	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.