Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004394

Physical Location & Seq

Genomic Coordinates Reverse (-)

39155599 .. 39156695

Gene Structure 1097 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0245000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGATATTGCTGGCATTGCATGCATTCATGTTTTCTCTCATCGGAGTCTTAGGCGTCTACCTCCAACTCAAGTTTCCGAATGTGTCTACATATGCGACCGCCTACGGCACTGTGATGATGGACCTCATCATTATTGAGACATGCTTTTACATCGTCTCTCTAGTTGTGATGGGAATCCTAGCTGCTCGCAATAATACATATTTCGAAGATCTGATGAACAATATTAGCCTCTTACTTGGAAGTCTGTCCCTGATTTTAGAGTTGCTCGTCCTTATTTCACCTTTCGGATGGATCGCACTCTTCGTATGGAGCATCTGCCTTTTATGCTTCCTGAGTAAGTCTTGCCGGTCTCTGAACACACTCTACCAAAGTGCAGTAGCACATCTTGTTCAAGACTTTGGAGAATTGAAACAGAAGCTGGTTGATCTGAATCGCCGCTTGATGGACAGTAACGCAATTGCAGCACTTCATGGTCCCTATCAGACATTGAAGGACCTGATCATCAGGAATGACGGGCGCATGAAAGAGCATGAAGCCCAGAACCATAGCAGTGAGAACAGTTCCATAGGGGTTTTGATAAGACTGATTTTAGTAAACCTCAGAGCAAAAATTGACAGTTCCATAGTGATTGTTCTCCTCGTCTTCGGTAGTATCTGCTTTCTGTGCGTTGTGATTAAGTCGTTCCAGTACTTTGAGGAGAAGCTGATCGTCATCAATGGCCGCTTGAAGGAAATGAGTGCAGTTGCAGCACTCCGTGAAAACAGAGACGTGACTTGGCGGGAAATAGCGGGAGTACCAAGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L19e

Protein Analysis

268

Amino Acids

30.09

Weight (kDa)

7.62

Isoelectric Point (pI)

34.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02780 AT3G16780 AT4G02230
fragaria_vesca	FvH4_2g26110 FvH4_4g18800
malus_domestica	MD03G1292100.v1.1 MD11G1306300.v1.1 MD13G1162700.v1.1 MD16G1134200.v1.1 MD16G1162500.v1.1
prunus_persica	Prupe.1G130100_v2.0.a1 Prupe.1G130100_v2.0.a1 Prupe.8G265100_v2.0.a1
pyrus_communis	pycom03g23130 pycom11g26810 pycom13g13900 pycom16g13780
rosa_chinensis	RchiOBHm_Chr4g0423611 RchiOBHm_Chr6g0294481
rosa_laevigata	RLG00000011865
rosa_multiflora	Rmu_sc0000464.1_g000018
rosa_roxburghii	Rroxscaffold_5G00365820 Rroxscaffold_7G00173290
rosa_rugosa	Rorug04G0189000 Rorug06G0245000 Rorug06G0245100
rosa_samantha	Rh4AG248600 Rh4BG253900 Rh4CG261900 Rh6AG357600
rosa_wichuraiana	Rw4G021290 Rw6G031190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	57, 86
AciI	CCGC	5 cut(s)	99, 436, 721, 778, 788
AclWI	GGATC	1 cut(s)	299
AcoI	YGGCCR	1 cut(s)	718
AcyI	GRCGYC	1 cut(s)	54
AdeI	CACNNNGTG	1 cut(s)	755
AfaI	GTAC	2 cut(s)	689, 795
AfiI	CCNNNNNNNGG	2 cut(s)	442, 727
AgsI	TTSAA	4 cut(s)	392, 409, 490, 727
AjiI	CACGTC	1 cut(s)	769
AjuI	GAANNNNNNNTTGG	2 cut(s)	57, 89
AluBI	AGCT	3 cut(s)	182, 418, 703
AluI	AGCT	3 cut(s)	182, 418, 703
Alw26I	GTCTC	4 cut(s)	131, 160, 354, 759
AlwI	GGATC	1 cut(s)	299
AlwNI	CAGNNNCTG	1 cut(s)	418
AoxI	GGCC	1 cut(s)	718
ApeKI	GCWGC	3 cut(s)	182, 461, 746
AspLEI	GCGC	1 cut(s)	519
AspS9I	GGNCC	3 cut(s)	121, 473, 493
AsuHPI	GGTGA	1 cut(s)	270
AsuII	TTCGAA	1 cut(s)	204
AvaII	GGWCC	3 cut(s)	121, 473, 493
BbsI	GAAGAC	1 cut(s)	634
BbvI	GCAGC	3 cut(s)	169, 473, 758
BccI	CCATC	4 cut(s)	112, 163, 282, 436
BceAI	ACGGC	1 cut(s)	121
BclI	TGATCA	1 cut(s)	498
BcoDI	GTCTC	4 cut(s)	131, 160, 354, 759
BfaI	CTAG	2 cut(s)	161, 179
BglII	AGATCT	1 cut(s)	208
BisI	GCNGC	5 cut(s)	183, 436, 462, 721, 747
BlsI	GCNGC	5 cut(s)	184, 437, 463, 722, 748
BmcAI	AGTACT	1 cut(s)	689
Bme18I	GGWCC	3 cut(s)	121, 473, 493
BmgBI	CACGTC	1 cut(s)	769
BmgT120I	GGNCC	3 cut(s)	121, 473, 493
BmiI	GGNNCC	1 cut(s)	475
BmsI	GCATC	1 cut(s)	321
BpiI	GAAGAC	1 cut(s)	634
Bpu14I	TTCGAA	1 cut(s)	204
BpuEI	CTTGAG	1 cut(s)	53
BsaBI	GATNNNNATC	3 cut(s)	173, 429, 710
BsaHI	GRCGYC	1 cut(s)	54
BsaI	GGTCTC	1 cut(s)	354
Bsc4I	CCNNNNNNNGG	2 cut(s)	442, 727
Bse118I	RCCGGY	1 cut(s)	345
Bse1I	ACTGG	1 cut(s)	685
Bse3DI	GCAATG	1 cut(s)	14
Bse8I	GATNNNNATC	3 cut(s)	173, 429, 710
BseGI	GGATG	1 cut(s)	293
BseJI	GATNNNNATC	3 cut(s)	173, 429, 710
BseLI	CCNNNNNNNGG	2 cut(s)	442, 727
BseMI	GCAATG	1 cut(s)	14
BseMII	CTCAG	2 cut(s)	323, 613
BseNI	ACTGG	1 cut(s)	685
BseRI	GAGGAG	2 cut(s)	626, 710
BseXI	GCAGC	3 cut(s)	169, 473, 758
BsgI	GTGCAG	2 cut(s)	393, 759
Bsh1285I	CGRYCG	1 cut(s)	99
BshFI	GGCC	1 cut(s)	720
BsiEI	CGRYCG	1 cut(s)	99
BsiSI	CCGG	1 cut(s)	346
BslFI	GGGAC	2 cut(s)	232, 459
BslI	CCNNNNNNNGG	2 cut(s)	442, 727
BsmAI	GTCTC	4 cut(s)	131, 160, 354, 759
BsmBI	CGTCTC	2 cut(s)	160, 759
BsmFI	GGGAC	2 cut(s)	232, 459
BsmI	GAATGC	1 cut(s)	23
BsnI	GGCC	1 cut(s)	720
Bso31I	GGTCTC	1 cut(s)	354
Bsp119I	TTCGAA	1 cut(s)	204
Bsp143I	GATC	5 cut(s)	208, 291, 424, 498, 705
BspACI	CCGC	5 cut(s)	99, 436, 721, 778, 788
BspANI	GGCC	1 cut(s)	720
BspCNI	CTCAG	2 cut(s)	324, 612
BspLI	GGNNCC	1 cut(s)	475
BspPI	GGATC	1 cut(s)	299
BspT104I	TTCGAA	1 cut(s)	204
BspTNI	GGTCTC	1 cut(s)	354
BsrDI	GCAATG	1 cut(s)	14
BsrFI	RCCGGY	1 cut(s)	345
BsrI	ACTGG	1 cut(s)	685
BssAI	RCCGGY	1 cut(s)	345
BssMI	GATC	5 cut(s)	208, 291, 424, 498, 705
BssNI	GRCGYC	1 cut(s)	54
Bst4CI	ACNGT	4 cut(s)	112, 449, 560, 617
Bst6I	CTCTTC	1 cut(s)	305
BstACI	GRCGYC	1 cut(s)	54
BstAPI	GCANNNNNTGC	1 cut(s)	20
BstBI	TTCGAA	1 cut(s)	204
BstC8I	GCNNGC	3 cut(s)	12, 21, 187
BstDEI	CTNAG	3 cut(s)	49, 332, 599
BstF5I	GGATG	1 cut(s)	293
BstHHI	GCGC	1 cut(s)	519
BstKTI	GATC	5 cut(s)	211, 294, 427, 501, 708
BstMAI	GTCTC	4 cut(s)	131, 160, 354, 759
BstMBI	GATC	5 cut(s)	208, 291, 424, 498, 705
BstMCI	CGRYCG	1 cut(s)	99
BstMWI	GCNNNNNNNGC	6 cut(s)	16, 20, 324, 461, 663, 746
BstNSI	RCATGY	2 cut(s)	23, 144
BstV1I	GCAGC	3 cut(s)	169, 473, 758
BstV2I	GAAGAC	1 cut(s)	634
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
BsuRI	GGCC	1 cut(s)	720
BtrI	CACGTC	1 cut(s)	769
BtsCI	GGATG	1 cut(s)	293
BtsI	GCAGTG	1 cut(s)	556
BtsIMutI	CAGTG	2 cut(s)	108, 556
Cac8I	GCNNGC	3 cut(s)	12, 21, 187
CaiI	CAGNNNCTG	1 cut(s)	418
CfoI	GCGC	1 cut(s)	519
Cfr10I	RCCGGY	1 cut(s)	345
Cfr13I	GGNCC	3 cut(s)	121, 473, 493
CseI	GACGC	1 cut(s)	43
Csp6I	GTAC	2 cut(s)	688, 794
CviAII	CATG	6 cut(s)	20, 28, 141, 470, 520, 530
CviJI	RGCY	6 cut(s)	182, 228, 418, 536, 703, 720
CviKI_1	RGCY	6 cut(s)	182, 228, 418, 536, 703, 720
CviQI	GTAC	2 cut(s)	688, 794
DdeI	CTNAG	3 cut(s)	49, 332, 599
DpnI	GATC	5 cut(s)	210, 293, 426, 500, 707
DpnII	GATC	5 cut(s)	208, 291, 424, 498, 705
DraIII	CACNNNGTG	1 cut(s)	755
EaeI	YGGCCR	1 cut(s)	718
Eam1104I	CTCTTC	1 cut(s)	305
EarI	CTCTTC	1 cut(s)	305
Eco31I	GGTCTC	1 cut(s)	354
Eco47I	GGWCC	3 cut(s)	121, 473, 493
EcoO109I	RGGNCCY	1 cut(s)	493
EcoT22I	ATGCAT	1 cut(s)	25
Esp3I	CGTCTC	2 cut(s)	160, 759
FaeI	CATG	6 cut(s)	23, 31, 144, 473, 523, 533
FaqI	GGGAC	2 cut(s)	232, 459
FatI	CATG	6 cut(s)	19, 27, 140, 469, 519, 529
FauI	CCCGC	2 cut(s)	771, 781
FauNDI	CATATG	1 cut(s)	91
FbaI	TGATCA	1 cut(s)	498
FblI	GTMKAC	2 cut(s)	57, 86
Fnu4HI	GCNGC	5 cut(s)	183, 436, 462, 721, 747
FokI	GGATG	1 cut(s)	300
Fsp4HI	GCNGC	5 cut(s)	183, 436, 462, 721, 747
FspBI	CTAG	2 cut(s)	161, 179
GlaI	GCGC	1 cut(s)	518
GluI	GCNGC	5 cut(s)	183, 436, 462, 721, 747
HaeIII	GGCC	1 cut(s)	720
HapII	CCGG	1 cut(s)	346
HgaI	GACGC	1 cut(s)	43
HhaI	GCGC	1 cut(s)	519
Hin1I	GRCGYC	1 cut(s)	54
Hin1II	CATG	6 cut(s)	23, 31, 144, 473, 523, 533
Hin6I	GCGC	1 cut(s)	517
HinP1I	GCGC	1 cut(s)	517
HinfI	GANTC	3 cut(s)	45, 174, 430
HpaII	CCGG	1 cut(s)	346
HphI	GGTGA	1 cut(s)	270
Hpy166II	GTNNAC	3 cut(s)	58, 87, 595
Hpy188I	TCNGA	8 cut(s)	44, 78, 213, 287, 354, 429, 483, 602
Hpy188III	TCNNGA	3 cut(s)	331, 392, 505
Hpy8I	GTNNAC	3 cut(s)	58, 87, 595
HpyAV	CCTTC	2 cut(s)	484, 721
HpyCH4III	ACNGT	4 cut(s)	112, 449, 560, 617
HpyCH4IV	ACGT	1 cut(s)	768
HpyCH4V	TGCA	6 cut(s)	19, 23, 374, 461, 740, 746
HpyF10VI	GCNNNNNNNGC	6 cut(s)	16, 20, 324, 461, 663, 746
HpyF3I	CTNAG	3 cut(s)	49, 332, 599
HpySE526I	ACGT	1 cut(s)	768
Hsp92I	GRCGYC	1 cut(s)	54
Hsp92II	CATG	6 cut(s)	23, 31, 144, 473, 523, 533
HspAI	GCGC	1 cut(s)	517
Ksp22I	TGATCA	1 cut(s)	498
Kzo9I	GATC	5 cut(s)	208, 291, 424, 498, 705
LmnI	GCTCC	1 cut(s)	309
LpnPI	CCDG	8 cut(s)	263, 344, 359, 404, 490, 509, 551, 698
Lsp1109I	GCAGC	3 cut(s)	169, 473, 758
LweI	GCATC	1 cut(s)	321
MaeI	CTAG	2 cut(s)	161, 179
MaeII	ACGT	1 cut(s)	768
MaeIII	GTNAC	2 cut(s)	449, 769
MalI	GATC	5 cut(s)	210, 293, 426, 500, 707
MboI	GATC	5 cut(s)	208, 291, 424, 498, 705
MboII	GAAGA	3 cut(s)	218, 292, 634
MfeI	CAATTG	1 cut(s)	456
MflI	RGATCY	1 cut(s)	208
MluCI	AATT	3 cut(s)	404, 456, 609
MlyI	GAGTC	1 cut(s)	54
MmeI	TCCRAC	1 cut(s)	88
MnlI	CCTC	6 cut(s)	71, 134, 239, 608, 647, 688
Mph1103I	ATGCAT	1 cut(s)	25
MseI	TTAA	1 cut(s)	675
MslI	CAYNNNNRTG	2 cut(s)	113, 549
MspI	CCGG	1 cut(s)	346
MunI	CAATTG	1 cut(s)	456
Mva1269I	GAATGC	1 cut(s)	23
MwoI	GCNNNNNNNGC	6 cut(s)	16, 20, 324, 461, 663, 746
NdeI	CATATG	1 cut(s)	91
NdeII	GATC	5 cut(s)	208, 291, 424, 498, 705
NlaIII	CATG	6 cut(s)	23, 31, 144, 473, 523, 533
NlaIV	GGNNCC	1 cut(s)	475
NmuCI	GTSAC	1 cut(s)	769
NsiI	ATGCAT	1 cut(s)	25
NspI	RCATGY	2 cut(s)	23, 144
NspV	TTCGAA	1 cut(s)	204
PaeI	GCATGC	1 cut(s)	23
PcsI	WCGNNNNNNNCGW	1 cut(s)	300
PctI	GAATGC	1 cut(s)	23
PfeI	GAWTC	2 cut(s)	174, 430
PkrI	GCNGC	5 cut(s)	184, 437, 463, 722, 748
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
PpuMI	RGGWCCY	1 cut(s)	493
Psp5II	RGGWCCY	1 cut(s)	493
PspN4I	GGNNCC	1 cut(s)	475
PspPI	GGNCC	3 cut(s)	121, 473, 493
PspPPI	RGGWCCY	1 cut(s)	493
PsrI	GAACNNNNNNTAC	2 cut(s)	347, 379
PstNI	CAGNNNCTG	1 cut(s)	418
PsuI	RGATCY	1 cut(s)	208
RsaI	GTAC	2 cut(s)	689, 795
RsaNI	GTAC	2 cut(s)	688, 794
RseI	CAYNNNNRTG	2 cut(s)	113, 549
SaqAI	TTAA	1 cut(s)	675
SatI	GCNGC	5 cut(s)	183, 436, 462, 721, 747
Sau3AI	GATC	5 cut(s)	208, 291, 424, 498, 705
Sau96I	GGNCC	3 cut(s)	121, 473, 493
ScaI	AGTACT	1 cut(s)	689
SchI	GAGTC	1 cut(s)	54
SetI	ASST	9 cut(s)	63, 126, 184, 283, 420, 498, 600, 705, 771
SfaNI	GCATC	1 cut(s)	321
SfuI	TTCGAA	1 cut(s)	204
SinI	GGWCC	3 cut(s)	121, 473, 493
SmiMI	CAYNNNNRTG	2 cut(s)	113, 549
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
SphI	GCATGC	1 cut(s)	23
Sse9I	AATT	3 cut(s)	404, 456, 609
SsiI	CCGC	5 cut(s)	99, 436, 721, 778, 788
SspI	AATATT	1 cut(s)	223
SspMI	CTAG	2 cut(s)	161, 179
TaaI	ACNGT	4 cut(s)	112, 449, 560, 617
TaiI	ACGT	1 cut(s)	771
TaqI	TCGA	1 cut(s)	204
TasI	AATT	3 cut(s)	404, 456, 609
TatI	WGTACW	1 cut(s)	687
TauI	GCSGC	2 cut(s)	438, 723
TfiI	GAWTC	2 cut(s)	174, 430
Tru1I	TTAA	1 cut(s)	675
Tru9I	TTAA	1 cut(s)	675
TscAI	CASTG	2 cut(s)	115, 556
TseFI	GTSAC	1 cut(s)	769
TseI	GCWGC	3 cut(s)	182, 461, 746
Tsp45I	GTSAC	1 cut(s)	769
TspDTI	ATGAA	5 cut(s)	16, 230, 458, 536, 546
TspGWI	ACGGA	1 cut(s)	743
TspRI	CASTG	2 cut(s)	115, 556
VpaK11BI	GGWCC	3 cut(s)	121, 473, 493
XceI	RCATGY	2 cut(s)	23, 144
XmiI	GTMKAC	2 cut(s)	57, 86
XspI	CTAG	2 cut(s)	161, 179
ZrmI	AGTACT	1 cut(s)	689
Zsp2I	ATGCAT	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.