Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0004394

Physical Location & Seq

Genomic Coordinates Reverse (-)

42069995 .. 42072004

Gene Structure 2010 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1306300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGTTTCGCTCAAGCTCCAGAAGAGGCTCGCCTCCAGCGTCCTCAAGTGCGGTCGCGGCAAGGTCTGGCTCGACCCCAATGAGGTCAGCGAGATCTCCATGGCCAACTCTCGCCAAAACATAAGGAAGTTGGTCAAGGATGGTTTCATCATCAGGAAGCCGACCAAGATTCACTCTCGCTCTCGTGCACGTCGTATGAAGGAGGCTAAGAGAAAGGGACGTCACTCTGGATATGGTAAGCGTAAGGGTACCAGGGAAGCAAGGCTTCCAACCAAGATCCTTTGGATGAGGAGGATGCGTGTGCTCAGGAGGTTGCTTCGCAAGTACCGTGAGTCGAAGAAGATTGACAAGCACATGTACCATGACATGTACATGAAGGTTAAGGGTAATGTTTTCAAGAATAAGAGAGTGCTGATGGAGAGCATTCACAAGTCAAAGGCTGAGAAGGCCAGAGAGAAGACTCTGTCTGATCAGTTCGAGGCTAAGCGGGCAAAGAACAAGGCTAGCAGGGAGAGGAAGCATGCTAGGAGAGAGGAACGCTTGGCCCAGGGACCTCAAGAGAAAGCACCAGCACCCGCTGCCCCAGCTGCAGCTCAACCAACACAGGTATCCAAGAAATCAAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L19e

Protein Analysis

210

Amino Acids

24.46

Weight (kDa)

11.45

Isoelectric Point (pI)

59.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L19e	PF01280	4 - 54	2.1e-27	Ribosomal protein L19e, N-terminal domain
Ribosomal_L19e_C	PF25476	56 - 146	3.4e-35	Ribosomal protein L19e, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02780 AT3G16780 AT4G02230
fragaria_vesca	FvH4_2g26110 FvH4_4g18800
malus_domestica	MD03G1292100.v1.1 MD11G1306300.v1.1 MD13G1162700.v1.1 MD16G1134200.v1.1 MD16G1162500.v1.1
prunus_persica	Prupe.1G130100_v2.0.a1 Prupe.1G130100_v2.0.a1 Prupe.8G265100_v2.0.a1
pyrus_communis	pycom03g23130 pycom11g26810 pycom13g13900 pycom16g13780
rosa_chinensis	RchiOBHm_Chr4g0423611 RchiOBHm_Chr6g0294481
rosa_laevigata	RLG00000011865
rosa_multiflora	Rmu_sc0000464.1_g000018
rosa_roxburghii	Rroxscaffold_5G00365820 Rroxscaffold_7G00173290
rosa_rugosa	Rorug04G0189000 Rorug06G0245000 Rorug06G0245100
rosa_samantha	Rh4AG248600 Rh4BG253900 Rh4CG261900 Rh6AG357600
rosa_wichuraiana	Rw4G021290 Rw6G031190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	223
Acc65I	GGTACC	1 cut(s)	248
AccB1I	GGYRCC	1 cut(s)	248
AccII	CGCG	1 cut(s)	57
AciI	CCGC	4 cut(s)	51, 57, 487, 576
AclWI	GGATC	1 cut(s)	271
AcoI	YGGCCR	1 cut(s)	102
AcyI	GRCGYC	1 cut(s)	220
AfaI	GTAC	4 cut(s)	250, 326, 359, 371
AfiI	CCNNNNNNNGG	1 cut(s)	82
AflIII	ACRYGT	2 cut(s)	354, 366
AgsI	TTSAA	1 cut(s)	397
AjiI	CACGTC	1 cut(s)	191
AjnI	CCWGG	2 cut(s)	251, 546
AluBI	AGCT	3 cut(s)	16, 587, 593
AluI	AGCT	3 cut(s)	16, 587, 593
Alw21I	GWGCWC	2 cut(s)	190, 306
Alw44I	GTGCAC	1 cut(s)	186
AlwI	GGATC	1 cut(s)	271
AoxI	GGCC	3 cut(s)	102, 447, 543
ApaLI	GTGCAC	1 cut(s)	186
ApeKI	GCWGC	3 cut(s)	578, 587, 590
Asp718I	GGTACC	1 cut(s)	248
AspS9I	GGNCC	2 cut(s)	544, 551
AsuNHI	GCTAGC	1 cut(s)	503
AvaII	GGWCC	1 cut(s)	551
BaeGI	GKGCMC	1 cut(s)	190
BaeI	ACNNNNGTAYC	2 cut(s)	591, 624
BalI	TGGCCA	1 cut(s)	104
BanI	GGYRCC	1 cut(s)	248
BauI	CACGAG	1 cut(s)	183
BbsI	GAAGAC	1 cut(s)	464
Bbv12I	GWGCWC	2 cut(s)	190, 306
BbvI	GCAGC	3 cut(s)	565, 574, 602
BccI	CCATC	2 cut(s)	134, 409
BciT130I	CCWGG	2 cut(s)	253, 548
BciVI	GTATCC	1 cut(s)	619
BclI	TGATCA	1 cut(s)	469
BfaI	CTAG	2 cut(s)	504, 525
BfmI	CTRYAG	1 cut(s)	588
BfuI	GTATCC	1 cut(s)	619
BglII	AGATCT	1 cut(s)	93
BisI	GCNGC	4 cut(s)	58, 579, 588, 591
BlpI	GCTNAGC	1 cut(s)	483
BlsI	GCNGC	4 cut(s)	59, 580, 589, 592
Bme1390I	CCNGG	2 cut(s)	253, 548
Bme18I	GGWCC	1 cut(s)	551
BmgBI	CACGTC	1 cut(s)	191
BmgT120I	GGNCC	2 cut(s)	544, 551
BmiI	GGNNCC	2 cut(s)	250, 552
BmrFI	CCNGG	2 cut(s)	253, 548
BmsI	GCATC	1 cut(s)	285
BmtI	GCTAGC	1 cut(s)	507
BpiI	GAAGAC	1 cut(s)	464
BpmI	CTGGAG	1 cut(s)	19
Bpu10I	CCTNAGC	1 cut(s)	305
Bpu1102I	GCTNAGC	1 cut(s)	483
BpuEI	CTTGAG	2 cut(s)	29, 540
BsaHI	GRCGYC	1 cut(s)	220
BsaJI	CCNNGG	4 cut(s)	99, 252, 546, 547
BsaXI	ACNNNNNCTCC	2 cut(s)	283, 313
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
BseBI	CCWGG	2 cut(s)	253, 548
BseDI	CCNNGG	4 cut(s)	99, 252, 546, 547
BseGI	GGATG	3 cut(s)	145, 291, 300
BseLI	CCNNNNNNNGG	1 cut(s)	82
BseMII	CTCAG	2 cut(s)	319, 432
BseRI	GAGGAG	1 cut(s)	304
BseSI	GKGCMC	1 cut(s)	190
BseXI	GCAGC	3 cut(s)	565, 574, 602
BseYI	CCCAGC	1 cut(s)	583
Bsh1236I	CGCG	1 cut(s)	57
Bsh1285I	CGRYCG	1 cut(s)	55
BshFI	GGCC	3 cut(s)	104, 449, 545
BshNI	GGYRCC	1 cut(s)	248
BsiEI	CGRYCG	1 cut(s)	55
BsiHKAI	GWGCWC	2 cut(s)	190, 306
BslFI	GGGAC	2 cut(s)	231, 564
BslI	CCNNNNNNNGG	1 cut(s)	82
BsmFI	GGGAC	2 cut(s)	231, 564
BsmI	GAATGC	1 cut(s)	423
BsnI	GGCC	3 cut(s)	104, 449, 545
Bsp1286I	GDGCHC	2 cut(s)	190, 306
Bsp1407I	TGTACA	1 cut(s)	369
Bsp143I	GATC	3 cut(s)	93, 276, 469
Bsp1720I	GCTNAGC	1 cut(s)	483
Bsp19I	CCATGG	1 cut(s)	99
BspACI	CCGC	4 cut(s)	51, 57, 487, 576
BspANI	GGCC	3 cut(s)	104, 449, 545
BspCNI	CTCAG	2 cut(s)	318, 433
BspFNI	CGCG	1 cut(s)	57
BspLI	GGNNCC	2 cut(s)	250, 552
BspMAI	CTGCAG	1 cut(s)	592
BspOI	GCTAGC	1 cut(s)	507
BspPI	GGATC	1 cut(s)	271
BspT107I	GGYRCC	1 cut(s)	248
BsrGI	TGTACA	1 cut(s)	369
BssECI	CCNNGG	4 cut(s)	99, 252, 546, 547
BssMI	GATC	3 cut(s)	93, 276, 469
BssNI	GRCGYC	1 cut(s)	220
BssSI	CACGAG	1 cut(s)	183
BssT1I	CCWWGG	1 cut(s)	99
Bst2BI	CACGAG	1 cut(s)	183
Bst2UI	CCWGG	2 cut(s)	253, 548
Bst4CI	ACNGT	1 cut(s)	329
Bst6I	CTCTTC	1 cut(s)	17
BstACI	GRCGYC	1 cut(s)	220
BstAPI	GCANNNNNTGC	1 cut(s)	578
BstAUI	TGTACA	1 cut(s)	369
BstC8I	GCNNGC	4 cut(s)	30, 489, 505, 522
BstDEI	CTNAG	4 cut(s)	207, 305, 441, 483
BstDSI	CCRYGG	1 cut(s)	99
BstF5I	GGATG	3 cut(s)	145, 291, 300
BstFNI	CGCG	1 cut(s)	57
BstKTI	GATC	3 cut(s)	96, 279, 472
BstMBI	GATC	3 cut(s)	93, 276, 469
BstMCI	CGRYCG	1 cut(s)	55
BstMWI	GCNNNNNNNGC	6 cut(s)	57, 446, 488, 578, 584, 587
BstNI	CCWGG	2 cut(s)	253, 548
BstNSI	RCATGY	3 cut(s)	358, 370, 524
BstSCI	CCNGG	2 cut(s)	251, 546
BstSFI	CTRYAG	1 cut(s)	588
BstSLI	GKGCMC	1 cut(s)	190
BstUI	CGCG	1 cut(s)	57
BstV1I	GCAGC	3 cut(s)	565, 574, 602
BstV2I	GAAGAC	1 cut(s)	464
BstX2I	RGATCY	2 cut(s)	93, 276
BstYI	RGATCY	2 cut(s)	93, 276
BsuI	GTATCC	1 cut(s)	619
BsuRI	GGCC	3 cut(s)	104, 449, 545
BtgI	CCRYGG	1 cut(s)	99
BtrI	CACGTC	1 cut(s)	191
BtsCI	GGATG	3 cut(s)	145, 291, 300
Cac8I	GCNNGC	4 cut(s)	30, 489, 505, 522
Cfr13I	GGNCC	2 cut(s)	544, 551
CseI	GACGC	1 cut(s)	28
Csp6I	GTAC	4 cut(s)	249, 325, 358, 370
CviAII	CATG	6 cut(s)	100, 355, 362, 367, 373, 521
CviQI	GTAC	4 cut(s)	249, 325, 358, 370
DdeI	CTNAG	4 cut(s)	207, 305, 441, 483
DpnI	GATC	3 cut(s)	95, 278, 471
DpnII	GATC	3 cut(s)	93, 276, 469
EaeI	YGGCCR	1 cut(s)	102
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
Eco130I	CCWWGG	1 cut(s)	99
Eco47I	GGWCC	1 cut(s)	551
EcoO109I	RGGNCCY	1 cut(s)	551
EcoRII	CCWGG	2 cut(s)	251, 546
EcoT14I	CCWWGG	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	99
FaeI	CATG	6 cut(s)	103, 358, 365, 370, 376, 524
FaiI	YATR	9 cut(s)	101, 122, 197, 234, 356, 363, 368, 374, 522
FalI	AAGNNNNNCTT	2 cut(s)	249, 281
FaqI	GGGAC	2 cut(s)	231, 564
FatI	CATG	6 cut(s)	99, 354, 361, 366, 372, 520
FauI	CCCGC	2 cut(s)	480, 583
FbaI	TGATCA	1 cut(s)	469
Fnu4HI	GCNGC	4 cut(s)	58, 579, 588, 591
FokI	GGATG	3 cut(s)	152, 298, 307
Fsp4HI	GCNGC	4 cut(s)	58, 579, 588, 591
FspBI	CTAG	2 cut(s)	504, 525
GluI	GCNGC	4 cut(s)	58, 579, 588, 591
GsaI	CCCAGC	1 cut(s)	587
GsuI	CTGGAG	1 cut(s)	19
HaeIII	GGCC	3 cut(s)	104, 449, 545
HgaI	GACGC	1 cut(s)	28
Hin1I	GRCGYC	1 cut(s)	220
Hin1II	CATG	6 cut(s)	103, 358, 365, 370, 376, 524
HinfI	GANTC	3 cut(s)	169, 332, 460
Hpy166II	GTNNAC	1 cut(s)	188
Hpy188I	TCNGA	1 cut(s)	469
Hpy188III	TCNNGA	6 cut(s)	19, 154, 228, 307, 397, 557
Hpy8I	GTNNAC	1 cut(s)	188
Hpy99I	CGWCG	1 cut(s)	195
HpyAV	CCTTC	3 cut(s)	193, 370, 439
HpyCH4III	ACNGT	1 cut(s)	329
HpyCH4IV	ACGT	2 cut(s)	190, 220
HpyCH4V	TGCA	2 cut(s)	188, 590
HpyF10VI	GCNNNNNNNGC	6 cut(s)	57, 446, 488, 578, 584, 587
HpyF3I	CTNAG	4 cut(s)	207, 305, 441, 483
HpySE526I	ACGT	2 cut(s)	190, 220
Hsp92I	GRCGYC	1 cut(s)	220
Hsp92II	CATG	6 cut(s)	103, 358, 365, 370, 376, 524
KpnI	GGTACC	1 cut(s)	252
Ksp22I	TGATCA	1 cut(s)	469
Kzo9I	GATC	3 cut(s)	93, 276, 469
LmnI	GCTCC	1 cut(s)	21
Lsp1109I	GCAGC	3 cut(s)	565, 574, 602
LweI	GCATC	1 cut(s)	285
MaeI	CTAG	2 cut(s)	504, 525
MaeII	ACGT	2 cut(s)	190, 220
MaeIII	GTNAC	1 cut(s)	221
MalI	GATC	3 cut(s)	95, 278, 471
MboI	GATC	3 cut(s)	93, 276, 469
MboII	GAAGA	4 cut(s)	34, 349, 352, 469
MflI	RGATCY	2 cut(s)	93, 276
MhlI	GDGCHC	2 cut(s)	190, 306
MlsI	TGGCCA	1 cut(s)	104
MluNI	TGGCCA	1 cut(s)	104
MlyI	GAGTC	2 cut(s)	341, 454
MmeI	TCCRAC	1 cut(s)	293
Mox20I	TGGCCA	1 cut(s)	104
MscI	TGGCCA	1 cut(s)	104
MseI	TTAA	1 cut(s)	381
MslI	CAYNNNNRTG	1 cut(s)	371
Msp20I	TGGCCA	1 cut(s)	104
MspA1I	CMGCKG	2 cut(s)	578, 587
MspR9I	CCNGG	2 cut(s)	253, 548
Mva1269I	GAATGC	1 cut(s)	423
MvaI	CCWGG	2 cut(s)	253, 548
MvnI	CGCG	1 cut(s)	57
MwoI	GCNNNNNNNGC	6 cut(s)	57, 446, 488, 578, 584, 587
NcoI	CCATGG	1 cut(s)	99
NdeII	GATC	3 cut(s)	93, 276, 469
NheI	GCTAGC	1 cut(s)	503
NlaIII	CATG	6 cut(s)	103, 358, 365, 370, 376, 524
NlaIV	GGNNCC	2 cut(s)	250, 552
NmuCI	GTSAC	1 cut(s)	221
NspI	RCATGY	3 cut(s)	358, 370, 524
PaeI	GCATGC	1 cut(s)	524
PasI	CCCWGGG	1 cut(s)	547
PciI	ACATGT	2 cut(s)	354, 366
PcsI	WCGNNNNNNNCGW	3 cut(s)	36, 190, 325
PctI	GAATGC	1 cut(s)	423
PfeI	GAWTC	1 cut(s)	169
PflFI	GACNNNGTC	1 cut(s)	463
PkrI	GCNGC	4 cut(s)	59, 580, 589, 592
PleI	GAGTC	2 cut(s)	340, 454
PpsI	GAGTC	2 cut(s)	340, 454
PpuMI	RGGWCCY	1 cut(s)	551
PscI	ACATGT	2 cut(s)	354, 366
Psp5II	RGGWCCY	1 cut(s)	551
Psp6I	CCWGG	2 cut(s)	251, 546
PspFI	CCCAGC	1 cut(s)	583
PspGI	CCWGG	2 cut(s)	251, 546
PspN4I	GGNNCC	2 cut(s)	250, 552
PspPI	GGNCC	2 cut(s)	544, 551
PspPPI	RGGWCCY	1 cut(s)	551
PstI	CTGCAG	1 cut(s)	592
PsuI	RGATCY	2 cut(s)	93, 276
PsyI	GACNNNGTC	1 cut(s)	463
PvuII	CAGCTG	1 cut(s)	587
RsaI	GTAC	4 cut(s)	250, 326, 359, 371
RsaNI	GTAC	4 cut(s)	249, 325, 358, 370
RseI	CAYNNNNRTG	1 cut(s)	371
SaqAI	TTAA	1 cut(s)	381
SatI	GCNGC	4 cut(s)	58, 579, 588, 591
Sau3AI	GATC	3 cut(s)	93, 276, 469
Sau96I	GGNCC	2 cut(s)	544, 551
SchI	GAGTC	2 cut(s)	341, 454
ScrFI	CCNGG	2 cut(s)	253, 548
SduI	GDGCHC	2 cut(s)	190, 306
SfaNI	GCATC	1 cut(s)	285
SfcI	CTRYAG	1 cut(s)	588
SinI	GGWCC	1 cut(s)	551
SmiMI	CAYNNNNRTG	1 cut(s)	371
SmlI	CTYRAG	3 cut(s)	11, 44, 555
SmoI	CTYRAG	3 cut(s)	11, 44, 555
SphI	GCATGC	1 cut(s)	524
SsiI	CCGC	4 cut(s)	51, 57, 487, 576
SspMI	CTAG	2 cut(s)	504, 525
StyD4I	CCNGG	2 cut(s)	251, 546
StyI	CCWWGG	1 cut(s)	99
TaaI	ACNGT	1 cut(s)	329
TaiI	ACGT	2 cut(s)	193, 223
TaqI	TCGA	3 cut(s)	72, 335, 477
TatI	WGTACW	1 cut(s)	369
TauI	GCSGC	1 cut(s)	60
TfiI	GAWTC	1 cut(s)	169
Tru1I	TTAA	1 cut(s)	381
Tru9I	TTAA	1 cut(s)	381
TseFI	GTSAC	1 cut(s)	221
TseI	GCWGC	3 cut(s)	578, 587, 590
Tsp45I	GTSAC	1 cut(s)	221
TspDTI	ATGAA	3 cut(s)	136, 212, 389
Tth111I	GACNNNGTC	1 cut(s)	463
VneI	GTGCAC	1 cut(s)	186
VpaK11BI	GGWCC	1 cut(s)	551
XceI	RCATGY	3 cut(s)	358, 370, 524
XspI	CTAG	2 cut(s)	504, 525
ZraI	GACGTC	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.