Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004394

Physical Location & Seq

Genomic Coordinates Reverse (-)

979158 .. 980698

Gene Structure 1541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G02230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGTTTCGTTGAAGCTCCAGAAGCGTCTCGCATCCTCAGTACTCAAGTGCGGGAAGAGAAAAGTATGGCTCGACCCGAACGAAGGAAGTGATATCTCCATGGCCAATTCGCGTCAAAACATCAGGAAGCTTGTGAAGGATGGATTCATCATCAGGAAGCCAACGAAGATCCACTCACGATCCAGGGCACGTCAATTGAATATAGCCAAGAGAAAGGGACGTCACTCTGGTTATGGTAAGAGGAAGGGTACCCGAGAGGCAAGGTTGCCAACAAAAGTTTTGTGGATGAGGAGGATGAGAGTGCTGAGGCGTCTGTTGAAGAAGTATAGGGAGACCAAGAAGATTGACAGACATATGTACCATGACATGTACATGAAAGTCAAGGGAAACGTCTTCAAGAACAAGCGTGTGTTGATGGAAAGTATTCACAAATCCAAGGCTGAGAAGGCTAGAGAGAAGACATTGTCTGACCAGTTTGAGGCTAAGAGGGCTAAGAACAAGGCTAGCCGAGAGAGGAAACATGCTCGACGAGAGGAGCGTCTTGCCAAGGGTCCTGGAGGAGACATACCTGCCGCTGCACCACCTGCACAAACCGCTGAGGTACCTGCGAAAAAGTCTAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L19e

Protein Analysis

208

Amino Acids

24.2

Weight (kDa)

11.39

Isoelectric Point (pI)

55.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L19e	PF01280	4 - 54	2.3e-27	Ribosomal protein L19e, N-terminal domain
Ribosomal_L19e_C	PF25476	56 - 146	3.4e-35	Ribosomal protein L19e, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02780 AT3G16780 AT4G02230
fragaria_vesca	FvH4_2g26110 FvH4_4g18800
malus_domestica	MD03G1292100.v1.1 MD11G1306300.v1.1 MD13G1162700.v1.1 MD16G1134200.v1.1 MD16G1162500.v1.1
prunus_persica	Prupe.1G130100_v2.0.a1 Prupe.1G130100_v2.0.a1 Prupe.8G265100_v2.0.a1
pyrus_communis	pycom03g23130 pycom11g26810 pycom13g13900 pycom16g13780
rosa_chinensis	RchiOBHm_Chr4g0423611 RchiOBHm_Chr6g0294481
rosa_laevigata	RLG00000011865
rosa_multiflora	Rmu_sc0000464.1_g000018
rosa_roxburghii	Rroxscaffold_5G00365820 Rroxscaffold_7G00173290
rosa_rugosa	Rorug04G0189000 Rorug06G0245000 Rorug06G0245100
rosa_samantha	Rh4AG248600 Rh4BG253900 Rh4CG261900 Rh6AG357600
rosa_wichuraiana	Rw4G021290 Rw6G031190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	592
AatII	GACGTC	1 cut(s)	223
Acc36I	ACCTGC	3 cut(s)	577, 592, 613
Acc65I	GGTACC	2 cut(s)	248, 601
AccB1I	GGYRCC	2 cut(s)	248, 601
AccII	CGCG	1 cut(s)	112
AciI	CCGC	3 cut(s)	51, 573, 594
AclWI	GGATC	2 cut(s)	163, 174
AcoI	YGGCCR	1 cut(s)	102
AcyI	GRCGYC	2 cut(s)	220, 310
AfaI	GTAC	5 cut(s)	42, 250, 359, 371, 603
AfiI	CCNNNNNNNGG	2 cut(s)	83, 478
AflIII	ACRYGT	1 cut(s)	366
AgsI	TTSAA	4 cut(s)	13, 199, 319, 397
AjiI	CACGTC	1 cut(s)	191
AjnI	CCWGG	2 cut(s)	182, 553
AluBI	AGCT	2 cut(s)	16, 130
AluI	AGCT	2 cut(s)	16, 130
Alw26I	GTCTC	3 cut(s)	32, 326, 555
AlwI	GGATC	2 cut(s)	163, 174
Ama87I	CYCGRG	1 cut(s)	252
AoxI	GGCC	1 cut(s)	102
ApeKI	GCWGC	1 cut(s)	575
Asp700I	GAANNNNTTC	1 cut(s)	423
Asp718I	GGTACC	2 cut(s)	248, 601
AspS9I	GGNCC	1 cut(s)	551
AsuNHI	GCTAGC	1 cut(s)	503
AvaI	CYCGRG	1 cut(s)	252
AvaII	GGWCC	1 cut(s)	551
BaeGI	GKGCMC	1 cut(s)	190
BaeI	ACNNNNGTAYC	2 cut(s)	341, 374
BalI	TGGCCA	1 cut(s)	104
BanI	GGYRCC	2 cut(s)	248, 601
BbsI	GAAGAC	2 cut(s)	385, 464
BbvCI	CCTCAGC	2 cut(s)	305, 597
BbvI	GCAGC	1 cut(s)	562
BccI	CCATC	2 cut(s)	134, 409
BciT130I	CCWGG	2 cut(s)	184, 555
BcoDI	GTCTC	3 cut(s)	32, 326, 555
BfaI	CTAG	2 cut(s)	450, 504
BfuAI	ACCTGC	3 cut(s)	577, 592, 613
BisI	GCNGC	2 cut(s)	573, 576
BlsI	GCNGC	2 cut(s)	574, 577
BmcAI	AGTACT	1 cut(s)	42
Bme1390I	CCNGG	2 cut(s)	184, 555
Bme18I	GGWCC	1 cut(s)	551
BmeT110I	CYCGRG	1 cut(s)	252
BmgBI	CACGTC	1 cut(s)	191
BmgT120I	GGNCC	1 cut(s)	551
BmiI	GGNNCC	3 cut(s)	250, 552, 603
BmrFI	CCNGG	2 cut(s)	184, 555
BmsI	GCATC	1 cut(s)	41
BmtI	GCTAGC	1 cut(s)	507
BpiI	GAAGAC	2 cut(s)	385, 464
BpmI	CTGGAG	1 cut(s)	576
Bpu10I	CCTNAGC	2 cut(s)	305, 597
BpuEI	CTTGAG	1 cut(s)	29
BsaHI	GRCGYC	2 cut(s)	220, 310
BsaI	GGTCTC	1 cut(s)	326
BsaJI	CCNNGG	4 cut(s)	99, 183, 435, 546
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 478
Bse1I	ACTGG	1 cut(s)	472
BseBI	CCWGG	2 cut(s)	184, 555
BseDI	CCNNGG	4 cut(s)	99, 183, 435, 546
BseGI	GGATG	4 cut(s)	32, 145, 291, 300
BseLI	CCNNNNNNNGG	2 cut(s)	83, 478
BseMII	CTCAG	4 cut(s)	51, 296, 432, 588
BseNI	ACTGG	1 cut(s)	472
BseRI	GAGGAG	3 cut(s)	304, 548, 573
BseSI	GKGCMC	1 cut(s)	190
BseXI	GCAGC	1 cut(s)	562
BsgI	GTGCAG	2 cut(s)	561, 570
Bsh1236I	CGCG	1 cut(s)	112
BshFI	GGCC	1 cut(s)	104
BshNI	GGYRCC	2 cut(s)	248, 601
BsiHKCI	CYCGRG	1 cut(s)	252
BslFI	GGGAC	1 cut(s)	231
BslI	CCNNNNNNNGG	2 cut(s)	83, 478
BsmAI	GTCTC	3 cut(s)	32, 326, 555
BsmBI	CGTCTC	1 cut(s)	32
BsmFI	GGGAC	1 cut(s)	231
BsnI	GGCC	1 cut(s)	104
Bso31I	GGTCTC	1 cut(s)	326
BsoBI	CYCGRG	1 cut(s)	252
Bsp1286I	GDGCHC	1 cut(s)	190
Bsp1407I	TGTACA	1 cut(s)	369
Bsp143I	GATC	2 cut(s)	168, 179
Bsp19I	CCATGG	1 cut(s)	99
BspACI	CCGC	3 cut(s)	51, 573, 594
BspANI	GGCC	1 cut(s)	104
BspCNI	CTCAG	4 cut(s)	50, 297, 433, 589
BspFNI	CGCG	1 cut(s)	112
BspLI	GGNNCC	3 cut(s)	250, 552, 603
BspMI	ACCTGC	3 cut(s)	577, 592, 613
BspOI	GCTAGC	1 cut(s)	507
BspPI	GGATC	2 cut(s)	163, 174
BspT107I	GGYRCC	2 cut(s)	248, 601
BspTNI	GGTCTC	1 cut(s)	326
BsrGI	TGTACA	1 cut(s)	369
BsrI	ACTGG	1 cut(s)	472
BssECI	CCNNGG	4 cut(s)	99, 183, 435, 546
BssMI	GATC	2 cut(s)	168, 179
BssNI	GRCGYC	2 cut(s)	220, 310
BssT1I	CCWWGG	3 cut(s)	99, 435, 546
Bst2UI	CCWGG	2 cut(s)	184, 555
Bst6I	CTCTTC	1 cut(s)	50
BstACI	GRCGYC	2 cut(s)	220, 310
BstAPI	GCANNNNNTGC	1 cut(s)	584
BstAUI	TGTACA	1 cut(s)	369
BstC8I	GCNNGC	1 cut(s)	505
BstDEI	CTNAG	7 cut(s)	37, 305, 441, 483, 492, 597, 618
BstDSI	CCRYGG	1 cut(s)	99
BstF5I	GGATG	4 cut(s)	32, 145, 291, 300
BstFNI	CGCG	1 cut(s)	112
BstKTI	GATC	2 cut(s)	171, 182
BstMAI	GTCTC	3 cut(s)	32, 326, 555
BstMBI	GATC	2 cut(s)	168, 179
BstMWI	GCNNNNNNNGC	5 cut(s)	22, 446, 488, 584, 593
BstNI	CCWGG	2 cut(s)	184, 555
BstNSI	RCATGY	2 cut(s)	370, 524
BstSCI	CCNGG	2 cut(s)	182, 553
BstSLI	GKGCMC	1 cut(s)	190
BstUI	CGCG	1 cut(s)	112
BstV1I	GCAGC	1 cut(s)	562
BstV2I	GAAGAC	2 cut(s)	385, 464
BstX2I	RGATCY	1 cut(s)	168
BstYI	RGATCY	1 cut(s)	168
BsuRI	GGCC	1 cut(s)	104
BtgI	CCRYGG	1 cut(s)	99
BtrI	CACGTC	1 cut(s)	191
BtsCI	GGATG	4 cut(s)	32, 145, 291, 300
BveI	ACCTGC	3 cut(s)	577, 592, 613
Cac8I	GCNNGC	1 cut(s)	505
Cfr13I	GGNCC	1 cut(s)	551
CseI	GACGC	4 cut(s)	14, 101, 299, 527
Csp6I	GTAC	5 cut(s)	41, 249, 358, 370, 602
CviAII	CATG	5 cut(s)	100, 362, 367, 373, 521
CviQI	GTAC	5 cut(s)	41, 249, 358, 370, 602
DdeI	CTNAG	7 cut(s)	37, 305, 441, 483, 492, 597, 618
DpnI	GATC	2 cut(s)	170, 181
DpnII	GATC	2 cut(s)	168, 179
EaeI	YGGCCR	1 cut(s)	102
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
Eco130I	CCWWGG	3 cut(s)	99, 435, 546
Eco31I	GGTCTC	1 cut(s)	326
Eco32I	GATATC	1 cut(s)	94
Eco47I	GGWCC	1 cut(s)	551
Eco88I	CYCGRG	1 cut(s)	252
EcoO109I	RGGNCCY	1 cut(s)	551
EcoRII	CCWGG	2 cut(s)	182, 553
EcoRV	GATATC	1 cut(s)	94
EcoT14I	CCWWGG	3 cut(s)	99, 435, 546
ErhI	CCWWGG	3 cut(s)	99, 435, 546
Esp3I	CGTCTC	1 cut(s)	32
FaeI	CATG	5 cut(s)	103, 365, 370, 376, 524
FaqI	GGGAC	1 cut(s)	231
FatI	CATG	5 cut(s)	99, 361, 366, 372, 520
FauI	CCCGC	1 cut(s)	44
FauNDI	CATATG	1 cut(s)	354
Fnu4HI	GCNGC	2 cut(s)	573, 576
FokI	GGATG	4 cut(s)	19, 152, 298, 307
Fsp4HI	GCNGC	2 cut(s)	573, 576
FspBI	CTAG	2 cut(s)	450, 504
GluI	GCNGC	2 cut(s)	573, 576
GsuI	CTGGAG	1 cut(s)	576
HaeIII	GGCC	1 cut(s)	104
HgaI	GACGC	4 cut(s)	14, 101, 299, 527
Hin1I	GRCGYC	2 cut(s)	220, 310
Hin1II	CATG	5 cut(s)	103, 365, 370, 376, 524
HindIII	AAGCTT	1 cut(s)	128
HinfI	GANTC	1 cut(s)	144
Hpy188I	TCNGA	1 cut(s)	469
Hpy188III	TCNNGA	5 cut(s)	19, 124, 154, 177, 397
Hpy99I	CGWCG	1 cut(s)	531
HpyAV	CCTTC	4 cut(s)	77, 130, 238, 439
HpyCH4IV	ACGT	3 cut(s)	190, 220, 390
HpyCH4V	TGCA	2 cut(s)	578, 587
HpyF10VI	GCNNNNNNNGC	5 cut(s)	22, 446, 488, 584, 593
HpyF3I	CTNAG	7 cut(s)	37, 305, 441, 483, 492, 597, 618
HpySE526I	ACGT	3 cut(s)	190, 220, 390
Hsp92I	GRCGYC	2 cut(s)	220, 310
Hsp92II	CATG	5 cut(s)	103, 365, 370, 376, 524
KpnI	GGTACC	2 cut(s)	252, 605
Kzo9I	GATC	2 cut(s)	168, 179
LmnI	GCTCC	2 cut(s)	21, 535
Lsp1109I	GCAGC	1 cut(s)	562
LweI	GCATC	1 cut(s)	41
MaeI	CTAG	2 cut(s)	450, 504
MaeII	ACGT	3 cut(s)	190, 220, 390
MaeIII	GTNAC	1 cut(s)	221
MalI	GATC	2 cut(s)	170, 181
MboI	GATC	2 cut(s)	168, 179
MboII	GAAGA	6 cut(s)	67, 178, 331, 352, 385, 469
MfeI	CAATTG	1 cut(s)	194
MflI	RGATCY	1 cut(s)	168
MhlI	GDGCHC	1 cut(s)	190
MlsI	TGGCCA	1 cut(s)	104
MluCI	AATT	2 cut(s)	106, 194
MluNI	TGGCCA	1 cut(s)	104
Mox20I	TGGCCA	1 cut(s)	104
MroXI	GAANNNNTTC	1 cut(s)	423
MscI	TGGCCA	1 cut(s)	104
MslI	CAYNNNNRTG	1 cut(s)	371
Msp20I	TGGCCA	1 cut(s)	104
MspA1I	CMGCKG	2 cut(s)	575, 596
MspR9I	CCNGG	2 cut(s)	184, 555
MunI	CAATTG	1 cut(s)	194
MvaI	CCWGG	2 cut(s)	184, 555
MvnI	CGCG	1 cut(s)	112
MwoI	GCNNNNNNNGC	5 cut(s)	22, 446, 488, 584, 593
NcoI	CCATGG	1 cut(s)	99
NdeI	CATATG	1 cut(s)	354
NdeII	GATC	2 cut(s)	168, 179
NheI	GCTAGC	1 cut(s)	503
NlaIII	CATG	5 cut(s)	103, 365, 370, 376, 524
NlaIV	GGNNCC	3 cut(s)	250, 552, 603
NmeAIII	GCCGAG	1 cut(s)	533
NmuCI	GTSAC	1 cut(s)	221
NspI	RCATGY	2 cut(s)	370, 524
PaqCI	CACCTGC	1 cut(s)	592
PciI	ACATGT	1 cut(s)	366
PcsI	WCGNNNNNNNCGW	2 cut(s)	78, 535
PdmI	GAANNNNTTC	1 cut(s)	423
PfeI	GAWTC	1 cut(s)	144
PflFI	GACNNNGTC	1 cut(s)	463
PfoI	TCCNGGA	1 cut(s)	553
PkrI	GCNGC	2 cut(s)	574, 577
PpuMI	RGGWCCY	1 cut(s)	551
PscI	ACATGT	1 cut(s)	366
Psp5II	RGGWCCY	1 cut(s)	551
Psp6I	CCWGG	2 cut(s)	182, 553
PspGI	CCWGG	2 cut(s)	182, 553
PspN4I	GGNNCC	3 cut(s)	250, 552, 603
PspPI	GGNCC	1 cut(s)	551
PspPPI	RGGWCCY	1 cut(s)	551
PsuI	RGATCY	1 cut(s)	168
PsyI	GACNNNGTC	1 cut(s)	463
RsaI	GTAC	5 cut(s)	42, 250, 359, 371, 603
RsaNI	GTAC	5 cut(s)	41, 249, 358, 370, 602
RseI	CAYNNNNRTG	1 cut(s)	371
SatI	GCNGC	2 cut(s)	573, 576
Sau3AI	GATC	2 cut(s)	168, 179
Sau96I	GGNCC	1 cut(s)	551
ScaI	AGTACT	1 cut(s)	42
ScrFI	CCNGG	2 cut(s)	184, 555
SduI	GDGCHC	1 cut(s)	190
SfaNI	GCATC	1 cut(s)	41
SinI	GGWCC	1 cut(s)	551
SmiMI	CAYNNNNRTG	1 cut(s)	371
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
Sse9I	AATT	2 cut(s)	106, 194
SsiI	CCGC	3 cut(s)	51, 573, 594
SspMI	CTAG	2 cut(s)	450, 504
StyD4I	CCNGG	2 cut(s)	182, 553
StyI	CCWWGG	3 cut(s)	99, 435, 546
TaiI	ACGT	3 cut(s)	193, 223, 393
TaqI	TCGA	2 cut(s)	72, 526
TasI	AATT	2 cut(s)	106, 194
TatI	WGTACW	2 cut(s)	40, 369
TauI	GCSGC	1 cut(s)	575
TfiI	GAWTC	1 cut(s)	144
TseFI	GTSAC	1 cut(s)	221
TseI	GCWGC	1 cut(s)	575
Tsp45I	GTSAC	1 cut(s)	221
TspDTI	ATGAA	2 cut(s)	136, 389
Tth111I	GACNNNGTC	1 cut(s)	463
VpaK11BI	GGWCC	1 cut(s)	551
XceI	RCATGY	2 cut(s)	370, 524
XmnI	GAANNNNTTC	1 cut(s)	423
XspI	CTAG	2 cut(s)	450, 504
ZraI	GACGTC	1 cut(s)	221
ZrmI	AGTACT	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.