Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0004394

Physical Location & Seq

Genomic Coordinates Reverse (-)

12819002 .. 12821181

Gene Structure 2180 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1162700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGTGTCGCTGAAGCTCCAGAAGCGGCTTTCCGCCAGCGTCCTCAAGTGCGGCCAAGGAAAGGTCTGGCTCGACCCCAATGAGGTCAGCGAGATCTCCATGGCCAATTCCAGGCAAAACATCAGGAAATTGGTTAAGGATGGGTTTATCATCAGGAAACCAACAAAGATCCACTCCCGTTCTCGTGCTCGGAGAATGAAGGAGGCCAAGAGGAAGGGTCGTCACTCTGGTTATGGTAAGCGCAAGGGTACCAGGGAGGCAAGGCTGCCCACCAAAATCCTCTGGATGAGGAGGATGCGAGTATTGAGGCGCTTGCTCCGTAAGTACCGAGAGTCCAAGAAAATTGACAAGCACATGTACCATGACATGTACATGAAAGTGAAAGGTAATGTCTTCAAGAACAAGCGTGTGTTGATGGAGAGCATACACAAGTCAAAGGCCGAGAAGGCAAGAGAAAAGACTCTAGCTGACCAGTTTGAGGCCAAGCGTGCGAAGAACAAGGCTAGCAGAGAGAGGAAGCATGCTCGCCGTGAAGAACGATTGGCACAGGGACCTGTAGAGAAGGCAGCACCCGCAGCCGCACCCCAACAGTCTGAGGGAGGTGCGAAGAAGGCAAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L19e

Protein Analysis

208

Amino Acids

24.15

Weight (kDa)

11.32

Isoelectric Point (pI)

59.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L19e	PF01280	4 - 54	9e-27	Ribosomal protein L19e, N-terminal domain
Ribosomal_L19e_C	PF25476	56 - 146	3.4e-35	Ribosomal protein L19e, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02780 AT3G16780 AT4G02230
fragaria_vesca	FvH4_2g26110 FvH4_4g18800
malus_domestica	MD03G1292100.v1.1 MD11G1306300.v1.1 MD13G1162700.v1.1 MD16G1134200.v1.1 MD16G1162500.v1.1
prunus_persica	Prupe.1G130100_v2.0.a1 Prupe.1G130100_v2.0.a1 Prupe.8G265100_v2.0.a1
pyrus_communis	pycom03g23130 pycom11g26810 pycom13g13900 pycom16g13780
rosa_chinensis	RchiOBHm_Chr4g0423611 RchiOBHm_Chr6g0294481
rosa_laevigata	RLG00000011865
rosa_multiflora	Rmu_sc0000464.1_g000018
rosa_roxburghii	Rroxscaffold_5G00365820 Rroxscaffold_7G00173290
rosa_rugosa	Rorug04G0189000 Rorug06G0245000 Rorug06G0245100
rosa_samantha	Rh4AG248600 Rh4BG253900 Rh4CG261900 Rh6AG357600
rosa_wichuraiana	Rw4G021290 Rw6G031190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	248
AccB1I	GGYRCC	1 cut(s)	248
AciI	CCGC	5 cut(s)	25, 33, 51, 573, 579
AclWI	GGATC	1 cut(s)	163
AcoI	YGGCCR	2 cut(s)	52, 102
AcuI	CTGAAG	1 cut(s)	32
AfaI	GTAC	4 cut(s)	250, 326, 359, 371
AfiI	CCNNNNNNNGG	4 cut(s)	61, 82, 111, 478
AflIII	ACRYGT	2 cut(s)	354, 366
AgsI	TTSAA	1 cut(s)	397
AjnI	CCWGG	2 cut(s)	110, 251
AluBI	AGCT	2 cut(s)	16, 467
AluI	AGCT	2 cut(s)	16, 467
Alw21I	GWGCWC	1 cut(s)	190
AlwI	GGATC	1 cut(s)	163
AoxI	GGCC	5 cut(s)	52, 102, 204, 438, 480
ApeKI	GCWGC	3 cut(s)	265, 566, 575
Asp718I	GGTACC	1 cut(s)	248
AspLEI	GCGC	2 cut(s)	243, 312
AspS9I	GGNCC	1 cut(s)	551
AsuNHI	GCTAGC	1 cut(s)	503
AvaII	GGWCC	1 cut(s)	551
BalI	TGGCCA	1 cut(s)	104
BanI	GGYRCC	1 cut(s)	248
BauI	CACGAG	1 cut(s)	183
BbsI	GAAGAC	1 cut(s)	385
Bbv12I	GWGCWC	1 cut(s)	190
BbvI	GCAGC	3 cut(s)	252, 578, 587
BccI	CCATC	2 cut(s)	134, 409
BceAI	ACGGC	1 cut(s)	513
BciT130I	CCWGG	2 cut(s)	112, 253
BfaI	CTAG	2 cut(s)	464, 504
BfmI	CTRYAG	1 cut(s)	555
BfoI	RGCGCY	1 cut(s)	313
BglI	GCCNNNNNGGC	1 cut(s)	446
BglII	AGATCT	1 cut(s)	93
BisI	GCNGC	6 cut(s)	26, 52, 266, 567, 576, 579
BlsI	GCNGC	6 cut(s)	27, 53, 267, 568, 577, 580
Bme1390I	CCNGG	2 cut(s)	112, 253
Bme18I	GGWCC	1 cut(s)	551
BmgT120I	GGNCC	1 cut(s)	551
BmiI	GGNNCC	2 cut(s)	250, 552
BmrFI	CCNGG	2 cut(s)	112, 253
BmsI	GCATC	1 cut(s)	285
BmtI	GCTAGC	1 cut(s)	507
BpiI	GAAGAC	1 cut(s)	385
BpuEI	CTTGAG	1 cut(s)	29
BsaJI	CCNNGG	3 cut(s)	55, 99, 252
Bsc4I	CCNNNNNNNGG	4 cut(s)	61, 82, 111, 478
Bse1I	ACTGG	1 cut(s)	472
BseBI	CCWGG	2 cut(s)	112, 253
BseDI	CCNNGG	3 cut(s)	55, 99, 252
BseGI	GGATG	3 cut(s)	145, 291, 300
BseLI	CCNNNNNNNGG	4 cut(s)	61, 82, 111, 478
BseMII	CTCAG	1 cut(s)	585
BseNI	ACTGG	1 cut(s)	472
BseRI	GAGGAG	1 cut(s)	304
BseXI	GCAGC	3 cut(s)	252, 578, 587
BshFI	GGCC	5 cut(s)	54, 104, 206, 440, 482
BshNI	GGYRCC	1 cut(s)	248
BsiHKAI	GWGCWC	1 cut(s)	190
BslFI	GGGAC	1 cut(s)	564
BslI	CCNNNNNNNGG	4 cut(s)	61, 82, 111, 478
BsmFI	GGGAC	1 cut(s)	564
BsnI	GGCC	5 cut(s)	54, 104, 206, 440, 482
Bsp1286I	GDGCHC	1 cut(s)	190
Bsp1407I	TGTACA	1 cut(s)	369
Bsp143I	GATC	2 cut(s)	93, 168
Bsp19I	CCATGG	1 cut(s)	99
BspACI	CCGC	5 cut(s)	25, 33, 51, 573, 579
BspANI	GGCC	5 cut(s)	54, 104, 206, 440, 482
BspCNI	CTCAG	1 cut(s)	586
BspLI	GGNNCC	2 cut(s)	250, 552
BspOI	GCTAGC	1 cut(s)	507
BspPI	GGATC	1 cut(s)	163
BspT107I	GGYRCC	1 cut(s)	248
BsrGI	TGTACA	1 cut(s)	369
BsrI	ACTGG	1 cut(s)	472
BssECI	CCNNGG	3 cut(s)	55, 99, 252
BssMI	GATC	2 cut(s)	93, 168
BssSI	CACGAG	1 cut(s)	183
BssT1I	CCWWGG	2 cut(s)	55, 99
Bst2BI	CACGAG	1 cut(s)	183
Bst2UI	CCWGG	2 cut(s)	112, 253
Bst4CI	ACNGT	1 cut(s)	591
BstAUI	TGTACA	1 cut(s)	369
BstC8I	GCNNGC	6 cut(s)	37, 314, 489, 505, 522, 526
BstDEI	CTNAG	1 cut(s)	594
BstDSI	CCRYGG	1 cut(s)	99
BstF5I	GGATG	3 cut(s)	145, 291, 300
BstH2I	RGCGCY	1 cut(s)	313
BstHHI	GCGC	2 cut(s)	243, 312
BstKTI	GATC	2 cut(s)	96, 171
BstMBI	GATC	2 cut(s)	93, 168
BstMWI	GCNNNNNNNGC	6 cut(s)	22, 446, 488, 572, 575, 611
BstNI	CCWGG	2 cut(s)	112, 253
BstNSI	RCATGY	3 cut(s)	358, 370, 524
BstSCI	CCNGG	2 cut(s)	110, 251
BstSFI	CTRYAG	1 cut(s)	555
BstV1I	GCAGC	3 cut(s)	252, 578, 587
BstV2I	GAAGAC	1 cut(s)	385
BstX2I	RGATCY	2 cut(s)	93, 168
BstYI	RGATCY	2 cut(s)	93, 168
BsuRI	GGCC	5 cut(s)	54, 104, 206, 440, 482
BtgI	CCRYGG	1 cut(s)	99
BtsCI	GGATG	3 cut(s)	145, 291, 300
Cac8I	GCNNGC	6 cut(s)	37, 314, 489, 505, 522, 526
CfoI	GCGC	2 cut(s)	243, 312
Cfr13I	GGNCC	1 cut(s)	551
CseI	GACGC	1 cut(s)	28
Csp6I	GTAC	4 cut(s)	249, 325, 358, 370
CviAII	CATG	6 cut(s)	100, 355, 362, 367, 373, 521
CviQI	GTAC	4 cut(s)	249, 325, 358, 370
DdeI	CTNAG	1 cut(s)	594
DpnI	GATC	2 cut(s)	95, 170
DpnII	GATC	2 cut(s)	93, 168
EaeI	YGGCCR	2 cut(s)	52, 102
EciI	GGCGGA	1 cut(s)	22
Eco130I	CCWWGG	2 cut(s)	55, 99
Eco47I	GGWCC	1 cut(s)	551
Eco57I	CTGAAG	1 cut(s)	32
EcoO109I	RGGNCCY	1 cut(s)	551
EcoRII	CCWGG	2 cut(s)	110, 251
EcoT14I	CCWWGG	2 cut(s)	55, 99
ErhI	CCWWGG	2 cut(s)	55, 99
FaeI	CATG	6 cut(s)	103, 358, 365, 370, 376, 524
FaiI	YATR	8 cut(s)	101, 234, 356, 363, 368, 374, 425, 522
FaqI	GGGAC	1 cut(s)	564
FatI	CATG	6 cut(s)	99, 354, 361, 366, 372, 520
FauI	CCCGC	1 cut(s)	580
Fnu4HI	GCNGC	6 cut(s)	26, 52, 266, 567, 576, 579
FokI	GGATG	3 cut(s)	152, 298, 307
Fsp4HI	GCNGC	6 cut(s)	26, 52, 266, 567, 576, 579
FspBI	CTAG	2 cut(s)	464, 504
GlaI	GCGC	2 cut(s)	242, 311
GluI	GCNGC	6 cut(s)	26, 52, 266, 567, 576, 579
HaeII	RGCGCY	1 cut(s)	313
HaeIII	GGCC	5 cut(s)	54, 104, 206, 440, 482
HgaI	GACGC	1 cut(s)	28
HhaI	GCGC	2 cut(s)	243, 312
Hin1II	CATG	6 cut(s)	103, 358, 365, 370, 376, 524
Hin6I	GCGC	2 cut(s)	241, 310
HinP1I	GCGC	2 cut(s)	241, 310
HinfI	GANTC	2 cut(s)	332, 460
Hpy188I	TCNGA	2 cut(s)	192, 595
Hpy188III	TCNNGA	5 cut(s)	19, 124, 154, 283, 397
HpyAV	CCTTC	5 cut(s)	193, 208, 439, 556, 604
HpyCH4III	ACNGT	1 cut(s)	591
HpyF10VI	GCNNNNNNNGC	6 cut(s)	22, 446, 488, 572, 575, 611
HpyF3I	CTNAG	1 cut(s)	594
Hsp92II	CATG	6 cut(s)	103, 358, 365, 370, 376, 524
HspAI	GCGC	2 cut(s)	241, 310
KpnI	GGTACC	1 cut(s)	252
Kzo9I	GATC	2 cut(s)	93, 168
LmnI	GCTCC	2 cut(s)	21, 321
Lsp1109I	GCAGC	3 cut(s)	252, 578, 587
LweI	GCATC	1 cut(s)	285
MaeI	CTAG	2 cut(s)	464, 504
MaeIII	GTNAC	1 cut(s)	221
MalI	GATC	2 cut(s)	95, 170
MboI	GATC	2 cut(s)	93, 168
MboII	GAAGA	4 cut(s)	385, 505, 545, 619
MflI	RGATCY	2 cut(s)	93, 168
MhlI	GDGCHC	1 cut(s)	190
MlsI	TGGCCA	1 cut(s)	104
MluCI	AATT	3 cut(s)	106, 128, 342
MluNI	TGGCCA	1 cut(s)	104
MlyI	GAGTC	2 cut(s)	341, 454
Mox20I	TGGCCA	1 cut(s)	104
MscI	TGGCCA	1 cut(s)	104
MseI	TTAA	1 cut(s)	135
MslI	CAYNNNNRTG	2 cut(s)	371, 377
Msp20I	TGGCCA	1 cut(s)	104
MspR9I	CCNGG	2 cut(s)	112, 253
MvaI	CCWGG	2 cut(s)	112, 253
MwoI	GCNNNNNNNGC	6 cut(s)	22, 446, 488, 572, 575, 611
NcoI	CCATGG	1 cut(s)	99
NdeII	GATC	2 cut(s)	93, 168
NheI	GCTAGC	1 cut(s)	503
NlaIII	CATG	6 cut(s)	103, 358, 365, 370, 376, 524
NlaIV	GGNNCC	2 cut(s)	250, 552
NmeAIII	GCCGAG	1 cut(s)	466
NmuCI	GTSAC	1 cut(s)	221
NspI	RCATGY	3 cut(s)	358, 370, 524
PaeI	GCATGC	1 cut(s)	524
PciI	ACATGT	2 cut(s)	354, 366
PkrI	GCNGC	6 cut(s)	27, 53, 267, 568, 577, 580
PleI	GAGTC	2 cut(s)	340, 454
PpsI	GAGTC	2 cut(s)	340, 454
PpuMI	RGGWCCY	1 cut(s)	551
PscI	ACATGT	2 cut(s)	354, 366
Psp5II	RGGWCCY	1 cut(s)	551
Psp6I	CCWGG	2 cut(s)	110, 251
PspGI	CCWGG	2 cut(s)	110, 251
PspN4I	GGNNCC	2 cut(s)	250, 552
PspPI	GGNCC	1 cut(s)	551
PspPPI	RGGWCCY	1 cut(s)	551
PsuI	RGATCY	2 cut(s)	93, 168
RsaI	GTAC	4 cut(s)	250, 326, 359, 371
RsaNI	GTAC	4 cut(s)	249, 325, 358, 370
RseI	CAYNNNNRTG	2 cut(s)	371, 377
SaqAI	TTAA	1 cut(s)	135
SatI	GCNGC	6 cut(s)	26, 52, 266, 567, 576, 579
Sau3AI	GATC	2 cut(s)	93, 168
Sau96I	GGNCC	1 cut(s)	551
SchI	GAGTC	2 cut(s)	341, 454
ScrFI	CCNGG	2 cut(s)	112, 253
SduI	GDGCHC	1 cut(s)	190
SetI	ASST	7 cut(s)	18, 66, 87, 388, 469, 556, 604
SfaNI	GCATC	1 cut(s)	285
SfcI	CTRYAG	1 cut(s)	555
SinI	GGWCC	1 cut(s)	551
SmiMI	CAYNNNNRTG	2 cut(s)	371, 377
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
SphI	GCATGC	1 cut(s)	524
Sse9I	AATT	3 cut(s)	106, 128, 342
SsiI	CCGC	5 cut(s)	25, 33, 51, 573, 579
SspMI	CTAG	2 cut(s)	464, 504
StyD4I	CCNGG	2 cut(s)	110, 251
StyI	CCWWGG	2 cut(s)	55, 99
TaaI	ACNGT	1 cut(s)	591
TaqI	TCGA	1 cut(s)	72
TasI	AATT	3 cut(s)	106, 128, 342
TatI	WGTACW	1 cut(s)	369
TauI	GCSGC	3 cut(s)	28, 54, 581
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TseFI	GTSAC	1 cut(s)	221
TseI	GCWGC	3 cut(s)	265, 566, 575
Tsp45I	GTSAC	1 cut(s)	221
TspDTI	ATGAA	2 cut(s)	212, 389
TspGWI	ACGGA	1 cut(s)	308
VpaK11BI	GGWCC	1 cut(s)	551
XceI	RCATGY	3 cut(s)	358, 370, 524
XspI	CTAG	2 cut(s)	464, 504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.