Rorug06G0245100

Belongs to the eukaryotic ribosomal protein eL19 family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
39160374 .. 39160688
315 bp
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UTR
Exon/CDS
Intron
Rorug06G0245100.1

Sequence Viewer

Length: 315 bp
ATGCTCTTAACTGTGATTAAGACTCTATTTTTGGCTCAGAATTCGAATGTGGGAGACTACCTCGTGCTAACCATATCTGGTTTCCTCAAGAGCCTTCAAACTTATTGTTATCAGAGACTAGACAACAAGAAAAAGCAAAATGACTTGGGTCATTGGCTGGAACCACCTGAAGATATCAAAGAGATGATTGTTCAGCAGATGAGTTTCAGTGGTCGAGTTCGTTTAAGCAGTTTGTGCAAGTCTTGGAGGTTGGTTTCTATGCGAAGAGATATCCGTGCTCCTAGACAACTCCCATGGTTAGTACACCCTCAATAA

Protein Analysis

104

Amino Acids

12.22

Weight (kDa)

9.86

Isoelectric Point (pI)

41.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 40
AcuI CTGAAG 1 cut(s) 189
AfaI GTAC 1 cut(s) 303
AgsI TTSAA 1 cut(s) 98
Alw21I GWGCWC 1 cut(s) 280
Alw26I GTCTC 2 cut(s) 48, 109
ApoI RAATTY 1 cut(s) 40
ArsI GACNNNNNNTTYG 2 cut(s) 13, 45
AsuII TTCGAA 1 cut(s) 44
BauI CACGAG 1 cut(s) 62
Bbv12I GWGCWC 1 cut(s) 280
BcoDI GTCTC 2 cut(s) 48, 109
BfaI CTAG 2 cut(s) 119, 282
BmiI GGNNCC 1 cut(s) 162
BoxI GACNNNNGTC 1 cut(s) 147
BplI GAGNNNNNCTC 2 cut(s) 45, 77
Bpu14I TTCGAA 1 cut(s) 44
BpuEI CTTGAG 1 cut(s) 71
BsaJI CCNNGG 1 cut(s) 293
BseDI CCNNGG 1 cut(s) 293
BseMII CTCAG 1 cut(s) 50
BsiHKAI GWGCWC 1 cut(s) 280
BsmAI GTCTC 2 cut(s) 48, 109
Bsp119I TTCGAA 1 cut(s) 44
Bsp1286I GDGCHC 1 cut(s) 280
Bsp19I CCATGG 1 cut(s) 293
BspCNI CTCAG 1 cut(s) 49
BspLI GGNNCC 1 cut(s) 162
BspT104I TTCGAA 1 cut(s) 44
BssECI CCNNGG 1 cut(s) 293
BssSI CACGAG 1 cut(s) 62
BssT1I CCWWGG 1 cut(s) 293
Bst2BI CACGAG 1 cut(s) 62
Bst4CI ACNGT 1 cut(s) 13
Bst6I CTCTTC 1 cut(s) 259
BstAPI GCANNNNNTGC 1 cut(s) 234
BstBI TTCGAA 1 cut(s) 44
BstDEI CTNAG 1 cut(s) 36
BstDSI CCRYGG 1 cut(s) 293
BstMAI GTCTC 2 cut(s) 48, 109
BstMWI GCNNNNNNNGC 1 cut(s) 234
BstPAI GACNNNNGTC 1 cut(s) 147
BtgI CCRYGG 1 cut(s) 293
BtsIMutI CAGTG 1 cut(s) 214
Csp6I GTAC 1 cut(s) 302
CviAII CATG 1 cut(s) 294
CviJI RGCY 3 cut(s) 35, 93, 157
CviKI_1 RGCY 3 cut(s) 35, 93, 157
CviQI GTAC 1 cut(s) 302
DdeI CTNAG 1 cut(s) 36
Eam1104I CTCTTC 1 cut(s) 259
EarI CTCTTC 1 cut(s) 259
Eco130I CCWWGG 1 cut(s) 293
Eco32I GATATC 2 cut(s) 175, 271
Eco57I CTGAAG 1 cut(s) 189
EcoRI GAATTC 1 cut(s) 40
EcoRV GATATC 2 cut(s) 175, 271
EcoT14I CCWWGG 1 cut(s) 293
ErhI CCWWGG 1 cut(s) 293
FaeI CATG 1 cut(s) 297
FaiI YATR 3 cut(s) 74, 260, 295
FatI CATG 1 cut(s) 293
FspBI CTAG 2 cut(s) 119, 282
Hin1II CATG 1 cut(s) 297
HinfI GANTC 1 cut(s) 22
Hpy166II GTNNAC 1 cut(s) 304
Hpy188I TCNGA 2 cut(s) 39, 114
Hpy188III TCNNGA 1 cut(s) 88
Hpy8I GTNNAC 1 cut(s) 304
HpyAV CCTTC 1 cut(s) 104
HpyCH4III ACNGT 1 cut(s) 13
HpyCH4V TGCA 1 cut(s) 237
HpyF10VI GCNNNNNNNGC 1 cut(s) 234
HpyF3I CTNAG 1 cut(s) 36
Hsp92II CATG 1 cut(s) 297
LmnI GCTCC 1 cut(s) 283
LpnPI CCDG 3 cut(s) 63, 143, 180
MaeI CTAG 2 cut(s) 119, 282
MboII GAAGA 2 cut(s) 182, 276
MhlI GDGCHC 1 cut(s) 280
MluCI AATT 1 cut(s) 40
MlyI GAGTC 1 cut(s) 16
MnlI CCTC 3 cut(s) 71, 95, 240
MseI TTAA 3 cut(s) 8, 18, 224
MwoI GCNNNNNNNGC 1 cut(s) 234
NcoI CCATGG 1 cut(s) 293
NlaIII CATG 1 cut(s) 297
NlaIV GGNNCC 1 cut(s) 162
NspV TTCGAA 1 cut(s) 44
PleI GAGTC 1 cut(s) 16
PpsI GAGTC 1 cut(s) 16
PshAI GACNNNNGTC 1 cut(s) 147
PspN4I GGNNCC 1 cut(s) 162
RsaI GTAC 1 cut(s) 303
RsaNI GTAC 1 cut(s) 302
SaqAI TTAA 3 cut(s) 8, 18, 224
SchI GAGTC 1 cut(s) 16
SduI GDGCHC 1 cut(s) 280
SetI ASST 3 cut(s) 63, 169, 251
SfuI TTCGAA 1 cut(s) 44
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
Sse9I AATT 1 cut(s) 40
SspMI CTAG 2 cut(s) 119, 282
StyI CCWWGG 1 cut(s) 293
TaaI ACNGT 1 cut(s) 13
TaqI TCGA 2 cut(s) 44, 214
TasI AATT 1 cut(s) 40
TatI WGTACW 1 cut(s) 301
Tru1I TTAA 3 cut(s) 8, 18, 224
Tru9I TTAA 3 cut(s) 8, 18, 224
TscAI CASTG 1 cut(s) 214
TspGWI ACGGA 1 cut(s) 263
TspRI CASTG 1 cut(s) 214
XapI RAATTY 1 cut(s) 40
XspI CTAG 2 cut(s) 119, 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.