Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004394

Physical Location & Seq

Genomic Coordinates Forward (+)

5708826 .. 5710579

Gene Structure 1754 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G16780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGTGTCGCTGAAGATCCAGAAGCGGCTCGCCGCATCCGTAATGAAATGCGGGAAAGGAAAAGTTTGGCTCGACCCCAATGAATCGGGCGATATCTCTATGGCCAATTCCAGGCAGAACATTAGGAAGCTTGTGAAGGATGGTTTCATTATCAGGAAGCCTACTAAGATCCACTCACGTTCTCGGGCTAGGGCTTTGAACGAGGCCAAGCGAAAGGGTCGTCACTCTGGATACGGTAAGAGAAAGGGTACAAGAGAGGCAAGGCTACCAACCAAGATTCTTTGGATGAGGAGAATGAGGGTGTTGAGGCGTTTCTTGAGCAAGTACCGTGAGTCAAAGAAGATTGATAGGCACATGTACCATGACATGTACATGAAAGTGAAGGGTAATGTTTTCAAGAACAAGCGTGTGCTTATGGAGAGCATCCACAAGATGAAGGCTGAGAAGGCTAGAGAGAAGACTCTCGCTGACCAGTTTGAGGCCAAGCGTATTAAGAACAAGGCTAGCAGGGAGAGAAAGTTTGCCAGAAGAGAGGAGAGATTAGCTCAGGGACCTGGAGGTGGAGAGACAACGACTCCTGCTGGCGCACCTCAACAACCAGAGGTAACCAAGAAGAAGTCGAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L19e

Protein Analysis

209

Amino Acids

24.33

Weight (kDa)

11.25

Isoelectric Point (pI)

51.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L19e	PF01280	4 - 54	1.3e-26	Ribosomal protein L19e, N-terminal domain
Ribosomal_L19e_C	PF25476	56 - 146	3.7e-35	Ribosomal protein L19e, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02780 AT3G16780 AT4G02230
fragaria_vesca	FvH4_2g26110 FvH4_4g18800
malus_domestica	MD03G1292100.v1.1 MD11G1306300.v1.1 MD13G1162700.v1.1 MD16G1134200.v1.1 MD16G1162500.v1.1
prunus_persica	Prupe.1G130100_v2.0.a1 Prupe.1G130100_v2.0.a1 Prupe.8G265100_v2.0.a1
pyrus_communis	pycom03g23130 pycom11g26810 pycom13g13900 pycom16g13780
rosa_chinensis	RchiOBHm_Chr4g0423611 RchiOBHm_Chr6g0294481
rosa_laevigata	RLG00000011865
rosa_multiflora	Rmu_sc0000464.1_g000018
rosa_roxburghii	Rroxscaffold_5G00365820 Rroxscaffold_7G00173290
rosa_rugosa	Rorug04G0189000 Rorug06G0245000 Rorug06G0245100
rosa_samantha	Rh4AG248600 Rh4BG253900 Rh4CG261900 Rh6AG357600
rosa_wichuraiana	Rw4G021290 Rw6G031190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	25, 33, 51
AclWI	GGATC	2 cut(s)	10, 163
AcoI	YGGCCR	1 cut(s)	102
AcuI	CTGAAG	1 cut(s)	32
AfaI	GTAC	4 cut(s)	250, 326, 359, 371
AfiI	CCNNNNNNNGG	3 cut(s)	111, 478, 560
AflIII	ACRYGT	2 cut(s)	354, 366
AgsI	TTSAA	2 cut(s)	199, 397
AjnI	CCWGG	2 cut(s)	110, 553
AluBI	AGCT	2 cut(s)	130, 545
AluI	AGCT	2 cut(s)	130, 545
Alw26I	GTCTC	1 cut(s)	560
AlwI	GGATC	2 cut(s)	10, 163
Ama87I	CYCGRG	1 cut(s)	183
AoxI	GGCC	3 cut(s)	102, 204, 480
ArsI	GACNNNNNNTTYG	2 cut(s)	205, 237
AspLEI	GCGC	1 cut(s)	587
AspS9I	GGNCC	1 cut(s)	551
AsuNHI	GCTAGC	1 cut(s)	503
AvaI	CYCGRG	1 cut(s)	183
AvaII	GGWCC	1 cut(s)	551
BalI	TGGCCA	1 cut(s)	104
BbsI	GAAGAC	1 cut(s)	464
BccI	CCATC	1 cut(s)	134
BciT130I	CCWGG	2 cut(s)	112, 555
BciVI	GTATCC	1 cut(s)	224
BcoDI	GTCTC	1 cut(s)	560
BfaI	CTAG	3 cut(s)	189, 450, 504
BfuI	GTATCC	1 cut(s)	224
BisI	GCNGC	2 cut(s)	26, 33
BlsI	GCNGC	2 cut(s)	27, 34
Bme1390I	CCNGG	2 cut(s)	112, 555
Bme18I	GGWCC	1 cut(s)	551
BmeT110I	CYCGRG	1 cut(s)	183
BmgT120I	GGNCC	1 cut(s)	551
BmiI	GGNNCC	1 cut(s)	552
BmrFI	CCNGG	2 cut(s)	112, 555
BmsI	GCATC	2 cut(s)	44, 432
BmtI	GCTAGC	1 cut(s)	507
BpiI	GAAGAC	1 cut(s)	464
BplI	GAGNNNNNCTC	2 cut(s)	529, 561
BpmI	CTGGAG	1 cut(s)	576
Bpu10I	CCTNAGC	1 cut(s)	546
BpuEI	CTTGAG	1 cut(s)	337
BsaXI	ACNNNNNCTCC	4 cut(s)	503, 533, 559, 589
Bsc4I	CCNNNNNNNGG	3 cut(s)	111, 478, 560
Bse1I	ACTGG	1 cut(s)	472
BseBI	CCWGG	2 cut(s)	112, 555
BseGI	GGATG	4 cut(s)	35, 145, 291, 423
BseLI	CCNNNNNNNGG	3 cut(s)	111, 478, 560
BseMII	CTCAG	2 cut(s)	432, 560
BseNI	ACTGG	1 cut(s)	472
BseRI	GAGGAG	2 cut(s)	304, 548
BshFI	GGCC	3 cut(s)	104, 206, 482
BsiHKCI	CYCGRG	1 cut(s)	183
BslFI	GGGAC	1 cut(s)	564
BslI	CCNNNNNNNGG	3 cut(s)	111, 478, 560
BsmAI	GTCTC	1 cut(s)	560
BsmFI	GGGAC	1 cut(s)	564
BsnI	GGCC	3 cut(s)	104, 206, 482
BsoBI	CYCGRG	1 cut(s)	183
Bsp1407I	TGTACA	1 cut(s)	369
Bsp143I	GATC	2 cut(s)	15, 168
BspACI	CCGC	3 cut(s)	25, 33, 51
BspANI	GGCC	3 cut(s)	104, 206, 482
BspCNI	CTCAG	2 cut(s)	433, 559
BspLI	GGNNCC	1 cut(s)	552
BspOI	GCTAGC	1 cut(s)	507
BspPI	GGATC	2 cut(s)	10, 163
BsrGI	TGTACA	1 cut(s)	369
BsrI	ACTGG	1 cut(s)	472
BssMI	GATC	2 cut(s)	15, 168
Bst2UI	CCWGG	2 cut(s)	112, 555
Bst4CI	ACNGT	2 cut(s)	236, 329
Bst6I	CTCTTC	1 cut(s)	523
BstAUI	TGTACA	1 cut(s)	369
BstC8I	GCNNGC	3 cut(s)	30, 505, 583
BstDEI	CTNAG	3 cut(s)	165, 441, 546
BstEII	GGTNACC	1 cut(s)	604
BstF5I	GGATG	4 cut(s)	35, 145, 291, 423
BstHHI	GCGC	1 cut(s)	587
BstKTI	GATC	2 cut(s)	18, 171
BstMAI	GTCTC	1 cut(s)	560
BstMBI	GATC	2 cut(s)	15, 168
BstMWI	GCNNNNNNNGC	1 cut(s)	446
BstNI	CCWGG	2 cut(s)	112, 555
BstNSI	RCATGY	2 cut(s)	358, 370
BstPI	GGTNACC	1 cut(s)	604
BstSCI	CCNGG	2 cut(s)	110, 553
BstV2I	GAAGAC	1 cut(s)	464
BstX2I	RGATCY	2 cut(s)	15, 168
BstYI	RGATCY	2 cut(s)	15, 168
BsuI	GTATCC	1 cut(s)	224
BsuRI	GGCC	3 cut(s)	104, 206, 482
BtsCI	GGATG	4 cut(s)	35, 145, 291, 423
Cac8I	GCNNGC	3 cut(s)	30, 505, 583
CfoI	GCGC	1 cut(s)	587
Cfr13I	GGNCC	1 cut(s)	551
Csp6I	GTAC	4 cut(s)	249, 325, 358, 370
CviAII	CATG	4 cut(s)	355, 362, 367, 373
CviQI	GTAC	4 cut(s)	249, 325, 358, 370
DdeI	CTNAG	3 cut(s)	165, 441, 546
DpnI	GATC	2 cut(s)	17, 170
DpnII	GATC	2 cut(s)	15, 168
EaeI	YGGCCR	1 cut(s)	102
Eam1104I	CTCTTC	1 cut(s)	523
EarI	CTCTTC	1 cut(s)	523
Eco32I	GATATC	1 cut(s)	94
Eco47I	GGWCC	1 cut(s)	551
Eco57I	CTGAAG	1 cut(s)	32
Eco88I	CYCGRG	1 cut(s)	183
Eco91I	GGTNACC	1 cut(s)	604
EcoO109I	RGGNCCY	1 cut(s)	551
EcoO65I	GGTNACC	1 cut(s)	604
EcoRII	CCWGG	2 cut(s)	110, 553
EcoRV	GATATC	1 cut(s)	94
FaeI	CATG	4 cut(s)	358, 365, 370, 376
FaiI	YATR	6 cut(s)	101, 356, 363, 368, 374, 416
FaqI	GGGAC	1 cut(s)	564
FatI	CATG	4 cut(s)	354, 361, 366, 372
FauI	CCCGC	1 cut(s)	44
Fnu4HI	GCNGC	2 cut(s)	26, 33
FokI	GGATG	4 cut(s)	22, 152, 298, 410
Fsp4HI	GCNGC	2 cut(s)	26, 33
FspBI	CTAG	3 cut(s)	189, 450, 504
GlaI	GCGC	1 cut(s)	586
GluI	GCNGC	2 cut(s)	26, 33
GsuI	CTGGAG	1 cut(s)	576
HaeIII	GGCC	3 cut(s)	104, 206, 482
HhaI	GCGC	1 cut(s)	587
Hin1II	CATG	4 cut(s)	358, 365, 370, 376
Hin6I	GCGC	1 cut(s)	585
HinP1I	GCGC	1 cut(s)	585
HindIII	AAGCTT	1 cut(s)	128
HinfI	GANTC	5 cut(s)	83, 277, 332, 460, 574
Hpy188III	TCNNGA	5 cut(s)	19, 154, 228, 316, 397
HpyAV	CCTTC	4 cut(s)	130, 376, 430, 439
HpyCH4III	ACNGT	2 cut(s)	236, 329
HpyCH4IV	ACGT	1 cut(s)	178
HpyF10VI	GCNNNNNNNGC	1 cut(s)	446
HpyF3I	CTNAG	3 cut(s)	165, 441, 546
HpySE526I	ACGT	1 cut(s)	178
Hsp92II	CATG	4 cut(s)	358, 365, 370, 376
HspAI	GCGC	1 cut(s)	585
Kzo9I	GATC	2 cut(s)	15, 168
LweI	GCATC	2 cut(s)	44, 432
MaeI	CTAG	3 cut(s)	189, 450, 504
MaeII	ACGT	1 cut(s)	178
MaeIII	GTNAC	2 cut(s)	221, 604
MalI	GATC	2 cut(s)	17, 170
MboI	GATC	2 cut(s)	15, 168
MboII	GAAGA	5 cut(s)	25, 352, 469, 540, 625
MflI	RGATCY	2 cut(s)	15, 168
MlsI	TGGCCA	1 cut(s)	104
MluCI	AATT	1 cut(s)	106
MluNI	TGGCCA	1 cut(s)	104
MlyI	GAGTC	3 cut(s)	341, 454, 568
Mox20I	TGGCCA	1 cut(s)	104
MscI	TGGCCA	1 cut(s)	104
MseI	TTAA	1 cut(s)	492
MslI	CAYNNNNRTG	2 cut(s)	371, 377
Msp20I	TGGCCA	1 cut(s)	104
MspR9I	CCNGG	2 cut(s)	112, 555
MvaI	CCWGG	2 cut(s)	112, 555
MwoI	GCNNNNNNNGC	1 cut(s)	446
NdeII	GATC	2 cut(s)	15, 168
NheI	GCTAGC	1 cut(s)	503
NlaIII	CATG	4 cut(s)	358, 365, 370, 376
NlaIV	GGNNCC	1 cut(s)	552
NmuCI	GTSAC	1 cut(s)	221
NspI	RCATGY	2 cut(s)	358, 370
PciI	ACATGT	2 cut(s)	354, 366
PcsI	WCGNNNNNNNCGW	1 cut(s)	36
PfeI	GAWTC	2 cut(s)	83, 277
PkrI	GCNGC	2 cut(s)	27, 34
PleI	GAGTC	3 cut(s)	340, 454, 568
PpsI	GAGTC	3 cut(s)	340, 454, 568
PpuMI	RGGWCCY	1 cut(s)	551
PscI	ACATGT	2 cut(s)	354, 366
Psp5II	RGGWCCY	1 cut(s)	551
Psp6I	CCWGG	2 cut(s)	110, 553
PspEI	GGTNACC	1 cut(s)	604
PspGI	CCWGG	2 cut(s)	110, 553
PspN4I	GGNNCC	1 cut(s)	552
PspPI	GGNCC	1 cut(s)	551
PspPPI	RGGWCCY	1 cut(s)	551
PsuI	RGATCY	2 cut(s)	15, 168
RsaI	GTAC	4 cut(s)	250, 326, 359, 371
RsaNI	GTAC	4 cut(s)	249, 325, 358, 370
RseI	CAYNNNNRTG	2 cut(s)	371, 377
SaqAI	TTAA	1 cut(s)	492
SatI	GCNGC	2 cut(s)	26, 33
Sau3AI	GATC	2 cut(s)	15, 168
Sau96I	GGNCC	1 cut(s)	551
SchI	GAGTC	3 cut(s)	341, 454, 568
ScrFI	CCNGG	2 cut(s)	112, 555
SetI	ASST	7 cut(s)	132, 181, 547, 556, 562, 592, 606
SfaNI	GCATC	2 cut(s)	44, 432
SinI	GGWCC	1 cut(s)	551
SmiMI	CAYNNNNRTG	2 cut(s)	371, 377
SmlI	CTYRAG	1 cut(s)	316
SmoI	CTYRAG	1 cut(s)	316
Sse9I	AATT	1 cut(s)	106
SsiI	CCGC	3 cut(s)	25, 33, 51
SspMI	CTAG	3 cut(s)	189, 450, 504
StyD4I	CCNGG	2 cut(s)	110, 553
TaaI	ACNGT	2 cut(s)	236, 329
TaiI	ACGT	1 cut(s)	181
TaqI	TCGA	2 cut(s)	72, 620
TasI	AATT	1 cut(s)	106
TatI	WGTACW	1 cut(s)	369
TauI	GCSGC	2 cut(s)	28, 35
TfiI	GAWTC	2 cut(s)	83, 277
Tru1I	TTAA	1 cut(s)	492
Tru9I	TTAA	1 cut(s)	492
TseFI	GTSAC	1 cut(s)	221
Tsp45I	GTSAC	1 cut(s)	221
TspDTI	ATGAA	5 cut(s)	59, 96, 136, 389, 449
TspGWI	ACGGA	1 cut(s)	28
VpaK11BI	GGWCC	1 cut(s)	551
XceI	RCATGY	2 cut(s)	358, 370
XspI	CTAG	3 cut(s)	189, 450, 504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.