Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004394

Physical Location & Seq

Genomic Coordinates Reverse (-)

13352963 .. 13354934

Gene Structure 1972 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00173290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGTTTCGCTCAAGCTCCAGAAGCGGCTCGCCGCCAGCGTCCTCAAGTGTGGTCAGGGAAAGGTCTGGCTTGACCCCAATGAAGTCAGCGACATCTCCATGGCCAACTCTCGCCAAAACATAAGGAAGTTGGTCAAGGATGGGTTCATCATCAGGAAGCCCACCAAGATTCACTCGCGCTCCCGTGCACGTCGTATGAAGGAGGCCAAGAGAAAGGGCCGTCACTCTGGATATGGTAAGCGTAAGGGTACCAGGGAGGCAAGGCTTCCAACCAAAATCCTCTGGATGCGCAGGATGCGTGTCCTCAGGCGGTTGCTTCGCAAGTACCGGGAGGCAAAGAAGATTGACAAGCACATGTACCATGACATGTACATGAAGGTTAAGGGTAATGTTTTCAAGAACAAGAGAGTGCTCATGGAGAGCATCCACAAGTCTAAGGCCGAGAAGGCAAGAGAGAAGACTTTGTCTGACCAGTTTGAAGCTAAGCGTGCCAAGAACAAGGCTAGCAGGGAGAGGAAAAATGCTAGGAGGGAAGAACGTTTGGCTCAGGGACCTGGAGCTCAACCAGCTGATGCAGCTCAACCAACACAGGTATCCAAGAAATCCAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L19e

Protein Analysis

204

Amino Acids

23.87

Weight (kDa)

11.39

Isoelectric Point (pI)

50.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L19e	PF01280	4 - 54	7.8e-28	Ribosomal protein L19e, N-terminal domain
Ribosomal_L19e_C	PF25476	56 - 146	3.7e-35	Ribosomal protein L19e, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02780 AT3G16780 AT4G02230
fragaria_vesca	FvH4_2g26110 FvH4_4g18800
malus_domestica	MD03G1292100.v1.1 MD11G1306300.v1.1 MD13G1162700.v1.1 MD16G1134200.v1.1 MD16G1162500.v1.1
prunus_persica	Prupe.1G130100_v2.0.a1 Prupe.1G130100_v2.0.a1 Prupe.8G265100_v2.0.a1
pyrus_communis	pycom03g23130 pycom11g26810 pycom13g13900 pycom16g13780
rosa_chinensis	RchiOBHm_Chr4g0423611 RchiOBHm_Chr6g0294481
rosa_laevigata	RLG00000011865
rosa_multiflora	Rmu_sc0000464.1_g000018
rosa_roxburghii	Rroxscaffold_5G00365820 Rroxscaffold_7G00173290
rosa_rugosa	Rorug04G0189000 Rorug06G0245000 Rorug06G0245100
rosa_samantha	Rh4AG248600 Rh4BG253900 Rh4CG261900 Rh6AG357600
rosa_wichuraiana	Rw4G021290 Rw6G031190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	290
Acc65I	GGTACC	1 cut(s)	248
AccB1I	GGYRCC	1 cut(s)	248
AccII	CGCG	1 cut(s)	178
AciI	CCGC	3 cut(s)	25, 33, 310
AclI	AACGTT	1 cut(s)	538
AcoI	YGGCCR	1 cut(s)	102
AfaI	GTAC	4 cut(s)	250, 326, 359, 371
AflIII	ACRYGT	2 cut(s)	354, 366
AgsI	TTSAA	2 cut(s)	397, 479
AjiI	CACGTC	1 cut(s)	191
AjnI	CCWGG	2 cut(s)	251, 553
AluBI	AGCT	5 cut(s)	16, 482, 560, 569, 578
AluI	AGCT	5 cut(s)	16, 482, 560, 569, 578
Alw21I	GWGCWC	3 cut(s)	190, 414, 562
Alw44I	GTGCAC	1 cut(s)	186
AoxI	GGCC	4 cut(s)	102, 204, 217, 438
ApaLI	GTGCAC	1 cut(s)	186
ApeKI	GCWGC	1 cut(s)	575
Asp718I	GGTACC	1 cut(s)	248
AspLEI	GCGC	2 cut(s)	180, 291
AspS9I	GGNCC	2 cut(s)	217, 551
AsuC2I	CCSGG	1 cut(s)	329
AsuNHI	GCTAGC	1 cut(s)	503
AvaII	GGWCC	1 cut(s)	551
AxyI	CCTNAGG	1 cut(s)	305
BaeGI	GKGCMC	1 cut(s)	190
BaeI	ACNNNNGTAYC	2 cut(s)	576, 609
BalI	TGGCCA	1 cut(s)	104
BanI	GGYRCC	1 cut(s)	248
BanII	GRGCYC	1 cut(s)	562
BbsI	GAAGAC	1 cut(s)	464
Bbv12I	GWGCWC	3 cut(s)	190, 414, 562
BbvI	GCAGC	1 cut(s)	587
BccI	CCATC	1 cut(s)	134
BceAI	ACGGC	1 cut(s)	204
BciT130I	CCWGG	2 cut(s)	253, 555
BciVI	GTATCC	1 cut(s)	604
BcnI	CCSGG	1 cut(s)	329
BfaI	CTAG	2 cut(s)	504, 525
BfuI	GTATCC	1 cut(s)	604
BglI	GCCNNNNNGGC	1 cut(s)	446
BisI	GCNGC	3 cut(s)	26, 33, 576
BlpI	GCTNAGC	1 cut(s)	483
BlsI	GCNGC	3 cut(s)	27, 34, 577
Bme1390I	CCNGG	3 cut(s)	253, 329, 555
Bme18I	GGWCC	1 cut(s)	551
BmgBI	CACGTC	1 cut(s)	191
BmgT120I	GGNCC	2 cut(s)	217, 551
BmiI	GGNNCC	2 cut(s)	250, 552
BmrFI	CCNGG	3 cut(s)	253, 329, 555
BmsI	GCATC	4 cut(s)	276, 285, 432, 562
BmtI	GCTAGC	1 cut(s)	507
BpiI	GAAGAC	1 cut(s)	464
BpmI	CTGGAG	1 cut(s)	576
Bpu10I	CCTNAGC	1 cut(s)	546
Bpu1102I	GCTNAGC	1 cut(s)	483
BpuEI	CTTGAG	1 cut(s)	29
BpuMI	CCSGG	1 cut(s)	329
BsaJI	CCNNGG	2 cut(s)	99, 252
BsaXI	ACNNNNNCTCC	2 cut(s)	164, 194
Bse1I	ACTGG	1 cut(s)	472
Bse21I	CCTNAGG	1 cut(s)	305
BseBI	CCWGG	2 cut(s)	253, 555
BseDI	CCNNGG	2 cut(s)	99, 252
BseGI	GGATG	4 cut(s)	145, 291, 300, 423
BseMII	CTCAG	2 cut(s)	319, 560
BseNI	ACTGG	1 cut(s)	472
BseSI	GKGCMC	1 cut(s)	190
BseXI	GCAGC	1 cut(s)	587
Bsh1236I	CGCG	1 cut(s)	178
BshFI	GGCC	4 cut(s)	104, 206, 219, 440
BshNI	GGYRCC	1 cut(s)	248
BsiHKAI	GWGCWC	3 cut(s)	190, 414, 562
BsiSI	CCGG	1 cut(s)	328
BslFI	GGGAC	1 cut(s)	564
BsmFI	GGGAC	1 cut(s)	564
BsnI	GGCC	4 cut(s)	104, 206, 219, 440
Bsp1286I	GDGCHC	3 cut(s)	190, 414, 562
Bsp1407I	TGTACA	1 cut(s)	369
Bsp1720I	GCTNAGC	1 cut(s)	483
Bsp19I	CCATGG	1 cut(s)	99
BspACI	CCGC	3 cut(s)	25, 33, 310
BspANI	GGCC	4 cut(s)	104, 206, 219, 440
BspCNI	CTCAG	2 cut(s)	318, 559
BspFNI	CGCG	1 cut(s)	178
BspLI	GGNNCC	2 cut(s)	250, 552
BspOI	GCTAGC	1 cut(s)	507
BspT107I	GGYRCC	1 cut(s)	248
BsrGI	TGTACA	1 cut(s)	369
BsrI	ACTGG	1 cut(s)	472
BssECI	CCNNGG	2 cut(s)	99, 252
BssT1I	CCWWGG	1 cut(s)	99
Bst2UI	CCWGG	2 cut(s)	253, 555
BstAUI	TGTACA	1 cut(s)	369
BstC8I	GCNNGC	4 cut(s)	30, 37, 489, 505
BstDEI	CTNAG	4 cut(s)	305, 435, 483, 546
BstDSI	CCRYGG	1 cut(s)	99
BstF5I	GGATG	4 cut(s)	145, 291, 300, 423
BstFNI	CGCG	1 cut(s)	178
BstHHI	GCGC	2 cut(s)	180, 291
BstMWI	GCNNNNNNNGC	6 cut(s)	22, 295, 446, 488, 566, 575
BstNI	CCWGG	2 cut(s)	253, 555
BstNSI	RCATGY	2 cut(s)	358, 370
BstSCI	CCNGG	3 cut(s)	251, 327, 553
BstSLI	GKGCMC	1 cut(s)	190
BstUI	CGCG	1 cut(s)	178
BstV1I	GCAGC	1 cut(s)	587
BstV2I	GAAGAC	1 cut(s)	464
Bsu36I	CCTNAGG	1 cut(s)	305
BsuI	GTATCC	1 cut(s)	604
BsuRI	GGCC	4 cut(s)	104, 206, 219, 440
BtgI	CCRYGG	1 cut(s)	99
BtrI	CACGTC	1 cut(s)	191
BtsCI	GGATG	4 cut(s)	145, 291, 300, 423
Cac8I	GCNNGC	4 cut(s)	30, 37, 489, 505
CfoI	GCGC	2 cut(s)	180, 291
Cfr13I	GGNCC	2 cut(s)	217, 551
CseI	GACGC	1 cut(s)	28
Csp6I	GTAC	4 cut(s)	249, 325, 358, 370
CviAII	CATG	6 cut(s)	100, 355, 362, 367, 373, 415
CviQI	GTAC	4 cut(s)	249, 325, 358, 370
DdeI	CTNAG	4 cut(s)	305, 435, 483, 546
EaeI	YGGCCR	1 cut(s)	102
Ecl136II	GAGCTC	1 cut(s)	560
Eco130I	CCWWGG	1 cut(s)	99
Eco24I	GRGCYC	1 cut(s)	562
Eco47I	GGWCC	1 cut(s)	551
Eco53kI	GAGCTC	1 cut(s)	560
Eco81I	CCTNAGG	1 cut(s)	305
EcoICRI	GAGCTC	1 cut(s)	560
EcoO109I	RGGNCCY	1 cut(s)	551
EcoRII	CCWGG	2 cut(s)	251, 553
EcoT14I	CCWWGG	1 cut(s)	99
EcoT38I	GRGCYC	1 cut(s)	562
ErhI	CCWWGG	1 cut(s)	99
FaeI	CATG	6 cut(s)	103, 358, 365, 370, 376, 418
FaiI	YATR	9 cut(s)	101, 122, 197, 234, 356, 363, 368, 374, 416
FaqI	GGGAC	1 cut(s)	564
FatI	CATG	6 cut(s)	99, 354, 361, 366, 372, 414
Fnu4HI	GCNGC	3 cut(s)	26, 33, 576
FokI	GGATG	4 cut(s)	152, 298, 307, 410
FriOI	GRGCYC	1 cut(s)	562
Fsp4HI	GCNGC	3 cut(s)	26, 33, 576
FspBI	CTAG	2 cut(s)	504, 525
FspI	TGCGCA	1 cut(s)	290
GlaI	GCGC	2 cut(s)	179, 290
GluI	GCNGC	3 cut(s)	26, 33, 576
GsuI	CTGGAG	1 cut(s)	576
HaeIII	GGCC	4 cut(s)	104, 206, 219, 440
HapII	CCGG	1 cut(s)	328
HgaI	GACGC	1 cut(s)	28
HhaI	GCGC	2 cut(s)	180, 291
Hin1II	CATG	6 cut(s)	103, 358, 365, 370, 376, 418
Hin6I	GCGC	2 cut(s)	178, 289
HinP1I	GCGC	2 cut(s)	178, 289
HinfI	GANTC	1 cut(s)	169
HpaII	CCGG	1 cut(s)	328
Hpy166II	GTNNAC	1 cut(s)	188
Hpy188I	TCNGA	1 cut(s)	469
Hpy188III	TCNNGA	5 cut(s)	19, 154, 228, 283, 397
Hpy8I	GTNNAC	1 cut(s)	188
Hpy99I	CGWCG	1 cut(s)	195
HpyAV	CCTTC	3 cut(s)	193, 370, 439
HpyCH4IV	ACGT	2 cut(s)	190, 538
HpyCH4V	TGCA	2 cut(s)	188, 575
HpyF10VI	GCNNNNNNNGC	6 cut(s)	22, 295, 446, 488, 566, 575
HpyF3I	CTNAG	4 cut(s)	305, 435, 483, 546
HpySE526I	ACGT	2 cut(s)	190, 538
Hsp92II	CATG	6 cut(s)	103, 358, 365, 370, 376, 418
HspAI	GCGC	2 cut(s)	178, 289
KpnI	GGTACC	1 cut(s)	252
LmnI	GCTCC	3 cut(s)	21, 185, 557
Lsp1109I	GCAGC	1 cut(s)	587
LweI	GCATC	4 cut(s)	276, 285, 432, 562
MaeI	CTAG	2 cut(s)	504, 525
MaeII	ACGT	2 cut(s)	190, 538
MaeIII	GTNAC	1 cut(s)	221
MboII	GAAGA	3 cut(s)	352, 469, 545
MhlI	GDGCHC	3 cut(s)	190, 414, 562
MlsI	TGGCCA	1 cut(s)	104
MluNI	TGGCCA	1 cut(s)	104
MmeI	TCCRAC	1 cut(s)	293
MnlI	CCTC	8 cut(s)	53, 196, 250, 290, 314, 325, 507, 522
Mox20I	TGGCCA	1 cut(s)	104
MscI	TGGCCA	1 cut(s)	104
MseI	TTAA	1 cut(s)	381
MslI	CAYNNNNRTG	2 cut(s)	98, 371
Msp20I	TGGCCA	1 cut(s)	104
MspA1I	CMGCKG	1 cut(s)	569
MspI	CCGG	1 cut(s)	328
MspR9I	CCNGG	3 cut(s)	253, 329, 555
MvaI	CCWGG	2 cut(s)	253, 555
MvnI	CGCG	1 cut(s)	178
MwoI	GCNNNNNNNGC	6 cut(s)	22, 295, 446, 488, 566, 575
NciI	CCSGG	1 cut(s)	329
NcoI	CCATGG	1 cut(s)	99
NheI	GCTAGC	1 cut(s)	503
NlaIII	CATG	6 cut(s)	103, 358, 365, 370, 376, 418
NlaIV	GGNNCC	2 cut(s)	250, 552
NmeAIII	GCCGAG	1 cut(s)	466
NmuCI	GTSAC	1 cut(s)	221
NsbI	TGCGCA	1 cut(s)	290
NspI	RCATGY	2 cut(s)	358, 370
PciI	ACATGT	2 cut(s)	354, 366
PcsI	WCGNNNNNNNCGW	1 cut(s)	36
PfeI	GAWTC	1 cut(s)	169
PflFI	GACNNNGTC	1 cut(s)	463
PkrI	GCNGC	3 cut(s)	27, 34, 577
PpuMI	RGGWCCY	1 cut(s)	551
PscI	ACATGT	2 cut(s)	354, 366
Psp124BI	GAGCTC	1 cut(s)	562
Psp1406I	AACGTT	1 cut(s)	538
Psp5II	RGGWCCY	1 cut(s)	551
Psp6I	CCWGG	2 cut(s)	251, 553
PspGI	CCWGG	2 cut(s)	251, 553
PspN4I	GGNNCC	2 cut(s)	250, 552
PspPI	GGNCC	2 cut(s)	217, 551
PspPPI	RGGWCCY	1 cut(s)	551
PsyI	GACNNNGTC	1 cut(s)	463
PvuII	CAGCTG	1 cut(s)	569
RsaI	GTAC	4 cut(s)	250, 326, 359, 371
RsaNI	GTAC	4 cut(s)	249, 325, 358, 370
RseI	CAYNNNNRTG	2 cut(s)	98, 371
SacI	GAGCTC	1 cut(s)	562
SaqAI	TTAA	1 cut(s)	381
SatI	GCNGC	3 cut(s)	26, 33, 576
Sau96I	GGNCC	2 cut(s)	217, 551
ScrFI	CCNGG	3 cut(s)	253, 329, 555
SduI	GDGCHC	3 cut(s)	190, 414, 562
SfaNI	GCATC	4 cut(s)	276, 285, 432, 562
SinI	GGWCC	1 cut(s)	551
SmiMI	CAYNNNNRTG	2 cut(s)	98, 371
SmlI	CTYRAG	2 cut(s)	11, 44
SmoI	CTYRAG	2 cut(s)	11, 44
SsiI	CCGC	3 cut(s)	25, 33, 310
SspMI	CTAG	2 cut(s)	504, 525
SstI	GAGCTC	1 cut(s)	562
StyD4I	CCNGG	3 cut(s)	251, 327, 553
StyI	CCWWGG	1 cut(s)	99
TaiI	ACGT	2 cut(s)	193, 541
TatI	WGTACW	1 cut(s)	369
TauI	GCSGC	2 cut(s)	28, 35
TfiI	GAWTC	1 cut(s)	169
Tru1I	TTAA	1 cut(s)	381
Tru9I	TTAA	1 cut(s)	381
TseFI	GTSAC	1 cut(s)	221
TseI	GCWGC	1 cut(s)	575
Tsp45I	GTSAC	1 cut(s)	221
TspDTI	ATGAA	4 cut(s)	96, 136, 212, 389
Tth111I	GACNNNGTC	1 cut(s)	463
VneI	GTGCAC	1 cut(s)	186
VpaK11BI	GGWCC	1 cut(s)	551
XceI	RCATGY	2 cut(s)	358, 370
XspI	CTAG	2 cut(s)	504, 525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.