Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0004394

Physical Location & Seq

Genomic Coordinates Reverse (-)

10300607 .. 10301215

Gene Structure 609 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1134200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGTTTCGCTCAAACTCCAGGAGAGGCTTGCCTCCAGCATCCTCAAGTGCGGTCGCGGCAAGGTCTGGATCGACCCCAATGAACTCAGCGAGATCTCGATGGCCAACTCTCGCCAGAACATAAGGAAGTTGGTCAAGGATGGCTTCATCATCAGGAAGCCGACCAAGATCCACTCGCGCTCTCGTGCACGTCGCATGAAGGAGGCTAAGAGAAAGGGACGTCACTCTGGATATGGTAAGCGCAAGGGTACCAGGGAGGCAAGGCTTCCTACCAAGATCCTTTGGATAAGGAGGATGCGTGTGCTCAGGCGGTTGCTTCGCAAGTACCGTGAGTCGAAGAAGCTTGACAAGCACTTGTACCATGACATGTATATGAAGGTTAAGGGTAATGTTTTTAAGAATAAGAGAGTGCTGATGGAGAGCATTCACAAGTCAAAGGCTGAGAAGGCCAGAGACAAGAGTCTGTCTGATCAGTTCGAGGCTAAGCGGGCAAAGAACAAGGCTGGCAGAGAGAGGAAGCATGCCAGGAGAGAGGAACGCTTGGCTGGGGGACCTCAAGAGAAAGCACCAGCATCCGCCGCCCCAGCTGCAGCTCAACCACTTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L19e

Protein Analysis

203

Amino Acids

23.58

Weight (kDa)

11.29

Isoelectric Point (pI)

56.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L19e	PF01280	4 - 54	5.1e-26	Ribosomal protein L19e, N-terminal domain
Ribosomal_L19e_C	PF25476	56 - 146	1.9e-34	Ribosomal protein L19e, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02780 AT3G16780 AT4G02230
fragaria_vesca	FvH4_2g26110 FvH4_4g18800
malus_domestica	MD03G1292100.v1.1 MD11G1306300.v1.1 MD13G1162700.v1.1 MD16G1134200.v1.1 MD16G1162500.v1.1
prunus_persica	Prupe.1G130100_v2.0.a1 Prupe.1G130100_v2.0.a1 Prupe.8G265100_v2.0.a1
pyrus_communis	pycom03g23130 pycom11g26810 pycom13g13900 pycom16g13780
rosa_chinensis	RchiOBHm_Chr4g0423611 RchiOBHm_Chr6g0294481
rosa_laevigata	RLG00000011865
rosa_multiflora	Rmu_sc0000464.1_g000018
rosa_roxburghii	Rroxscaffold_5G00365820 Rroxscaffold_7G00173290
rosa_rugosa	Rorug04G0189000 Rorug06G0245000 Rorug06G0245100
rosa_samantha	Rh4AG248600 Rh4BG253900 Rh4CG261900 Rh6AG357600
rosa_wichuraiana	Rw4G021290 Rw6G031190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	223
Acc65I	GGTACC	1 cut(s)	248
AccB1I	GGYRCC	1 cut(s)	248
AccII	CGCG	2 cut(s)	57, 178
AciI	CCGC	6 cut(s)	51, 57, 310, 487, 576, 579
AclWI	GGATC	3 cut(s)	77, 163, 271
AcoI	YGGCCR	1 cut(s)	102
AcyI	GRCGYC	1 cut(s)	220
AfaI	GTAC	3 cut(s)	250, 326, 359
AflIII	ACRYGT	1 cut(s)	366
AjiI	CACGTC	1 cut(s)	191
AjnI	CCWGG	3 cut(s)	18, 251, 524
AluBI	AGCT	3 cut(s)	343, 587, 593
AluI	AGCT	3 cut(s)	343, 587, 593
Alw21I	GWGCWC	2 cut(s)	190, 306
Alw26I	GTCTC	1 cut(s)	447
Alw44I	GTGCAC	1 cut(s)	186
AlwI	GGATC	3 cut(s)	77, 163, 271
AoxI	GGCC	2 cut(s)	102, 447
ApaLI	GTGCAC	1 cut(s)	186
ApeKI	GCWGC	2 cut(s)	587, 590
Asp718I	GGTACC	1 cut(s)	248
AspLEI	GCGC	2 cut(s)	180, 243
AspS9I	GGNCC	1 cut(s)	551
AvaII	GGWCC	1 cut(s)	551
BaeGI	GKGCMC	1 cut(s)	190
BalI	TGGCCA	1 cut(s)	104
BanI	GGYRCC	1 cut(s)	248
BauI	CACGAG	1 cut(s)	183
Bbv12I	GWGCWC	2 cut(s)	190, 306
BbvI	GCAGC	2 cut(s)	574, 602
BccI	CCATC	3 cut(s)	94, 134, 409
BciT130I	CCWGG	3 cut(s)	20, 253, 526
BclI	TGATCA	1 cut(s)	469
BcoDI	GTCTC	1 cut(s)	447
BfmI	CTRYAG	1 cut(s)	588
BglII	AGATCT	1 cut(s)	93
BisI	GCNGC	4 cut(s)	58, 579, 588, 591
BlpI	GCTNAGC	1 cut(s)	483
BlsI	GCNGC	4 cut(s)	59, 580, 589, 592
Bme1390I	CCNGG	3 cut(s)	20, 253, 526
Bme18I	GGWCC	1 cut(s)	551
BmgBI	CACGTC	1 cut(s)	191
BmgT120I	GGNCC	1 cut(s)	551
BmiI	GGNNCC	2 cut(s)	250, 552
BmrFI	CCNGG	3 cut(s)	20, 253, 526
BmsI	GCATC	3 cut(s)	48, 285, 581
BoxI	GACNNNNGTC	1 cut(s)	459
BpmI	CTGGAG	1 cut(s)	19
Bpu10I	CCTNAGC	1 cut(s)	305
Bpu1102I	GCTNAGC	1 cut(s)	483
BpuEI	CTTGAG	2 cut(s)	29, 540
BsaHI	GRCGYC	1 cut(s)	220
BsaJI	CCNNGG	1 cut(s)	252
BsaXI	ACNNNNNCTCC	2 cut(s)	283, 313
BseBI	CCWGG	3 cut(s)	20, 253, 526
BseDI	CCNNGG	1 cut(s)	252
BseGI	GGATG	4 cut(s)	39, 145, 300, 572
BseMII	CTCAG	3 cut(s)	100, 319, 432
BseSI	GKGCMC	1 cut(s)	190
BseXI	GCAGC	2 cut(s)	574, 602
BseYI	CCCAGC	2 cut(s)	545, 583
Bsh1236I	CGCG	2 cut(s)	57, 178
Bsh1285I	CGRYCG	1 cut(s)	55
BshFI	GGCC	2 cut(s)	104, 449
BshNI	GGYRCC	1 cut(s)	248
BsiEI	CGRYCG	1 cut(s)	55
BsiHKAI	GWGCWC	2 cut(s)	190, 306
BslFI	GGGAC	2 cut(s)	231, 564
BsmAI	GTCTC	1 cut(s)	447
BsmFI	GGGAC	2 cut(s)	231, 564
BsmI	GAATGC	1 cut(s)	423
BsnI	GGCC	2 cut(s)	104, 449
Bsp1286I	GDGCHC	2 cut(s)	190, 306
Bsp143I	GATC	5 cut(s)	69, 93, 168, 276, 469
Bsp1720I	GCTNAGC	1 cut(s)	483
BspACI	CCGC	6 cut(s)	51, 57, 310, 487, 576, 579
BspANI	GGCC	2 cut(s)	104, 449
BspCNI	CTCAG	3 cut(s)	99, 318, 433
BspFNI	CGCG	2 cut(s)	57, 178
BspLI	GGNNCC	2 cut(s)	250, 552
BspMAI	CTGCAG	1 cut(s)	592
BspPI	GGATC	3 cut(s)	77, 163, 271
BspT107I	GGYRCC	1 cut(s)	248
BssECI	CCNNGG	1 cut(s)	252
BssMI	GATC	5 cut(s)	69, 93, 168, 276, 469
BssNI	GRCGYC	1 cut(s)	220
BssSI	CACGAG	1 cut(s)	183
Bst2BI	CACGAG	1 cut(s)	183
Bst2UI	CCWGG	3 cut(s)	20, 253, 526
Bst4CI	ACNGT	1 cut(s)	329
BstACI	GRCGYC	1 cut(s)	220
BstC8I	GCNNGC	4 cut(s)	30, 489, 505, 522
BstDEI	CTNAG	5 cut(s)	86, 207, 305, 441, 483
BstF5I	GGATG	4 cut(s)	39, 145, 300, 572
BstFNI	CGCG	2 cut(s)	57, 178
BstHHI	GCGC	2 cut(s)	180, 243
BstKTI	GATC	5 cut(s)	72, 96, 171, 279, 472
BstMAI	GTCTC	1 cut(s)	447
BstMBI	GATC	5 cut(s)	69, 93, 168, 276, 469
BstMCI	CGRYCG	1 cut(s)	55
BstMWI	GCNNNNNNNGC	7 cut(s)	57, 349, 446, 488, 578, 584, 587
BstNI	CCWGG	3 cut(s)	20, 253, 526
BstNSI	RCATGY	2 cut(s)	370, 524
BstPAI	GACNNNNGTC	1 cut(s)	459
BstSCI	CCNGG	3 cut(s)	18, 251, 524
BstSFI	CTRYAG	1 cut(s)	588
BstSLI	GKGCMC	1 cut(s)	190
BstUI	CGCG	2 cut(s)	57, 178
BstV1I	GCAGC	2 cut(s)	574, 602
BstX2I	RGATCY	3 cut(s)	93, 168, 276
BstYI	RGATCY	3 cut(s)	93, 168, 276
BsuRI	GGCC	2 cut(s)	104, 449
BtrI	CACGTC	1 cut(s)	191
BtsCI	GGATG	4 cut(s)	39, 145, 300, 572
Cac8I	GCNNGC	4 cut(s)	30, 489, 505, 522
CfoI	GCGC	2 cut(s)	180, 243
Cfr13I	GGNCC	1 cut(s)	551
Csp6I	GTAC	3 cut(s)	249, 325, 358
CviAII	CATG	4 cut(s)	196, 362, 367, 521
CviQI	GTAC	3 cut(s)	249, 325, 358
DdeI	CTNAG	5 cut(s)	86, 207, 305, 441, 483
DpnI	GATC	5 cut(s)	71, 95, 170, 278, 471
DpnII	GATC	5 cut(s)	69, 93, 168, 276, 469
EaeI	YGGCCR	1 cut(s)	102
EciI	GGCGGA	1 cut(s)	565
Eco47I	GGWCC	1 cut(s)	551
EcoO109I	RGGNCCY	1 cut(s)	551
EcoRII	CCWGG	3 cut(s)	18, 251, 524
FaeI	CATG	4 cut(s)	199, 365, 370, 524
FaiI	YATR	8 cut(s)	122, 197, 234, 363, 368, 372, 374, 522
FalI	AAGNNNNNCTT	2 cut(s)	128, 160
FaqI	GGGAC	2 cut(s)	231, 564
FatI	CATG	4 cut(s)	195, 361, 366, 520
FauI	CCCGC	1 cut(s)	480
FbaI	TGATCA	1 cut(s)	469
Fnu4HI	GCNGC	4 cut(s)	58, 579, 588, 591
FokI	GGATG	4 cut(s)	26, 152, 307, 559
Fsp4HI	GCNGC	4 cut(s)	58, 579, 588, 591
GlaI	GCGC	2 cut(s)	179, 242
GluI	GCNGC	4 cut(s)	58, 579, 588, 591
GsaI	CCCAGC	2 cut(s)	549, 587
GsuI	CTGGAG	1 cut(s)	19
HaeIII	GGCC	2 cut(s)	104, 449
HhaI	GCGC	2 cut(s)	180, 243
Hin1I	GRCGYC	1 cut(s)	220
Hin1II	CATG	4 cut(s)	199, 365, 370, 524
Hin6I	GCGC	2 cut(s)	178, 241
HinP1I	GCGC	2 cut(s)	178, 241
HindIII	AAGCTT	1 cut(s)	341
HinfI	GANTC	2 cut(s)	332, 460
Hpy166II	GTNNAC	1 cut(s)	188
Hpy188I	TCNGA	1 cut(s)	469
Hpy188III	TCNNGA	5 cut(s)	67, 97, 154, 228, 557
Hpy8I	GTNNAC	1 cut(s)	188
Hpy99I	CGWCG	1 cut(s)	195
HpyAV	CCTTC	3 cut(s)	193, 370, 439
HpyCH4III	ACNGT	1 cut(s)	329
HpyCH4IV	ACGT	2 cut(s)	190, 220
HpyCH4V	TGCA	2 cut(s)	188, 590
HpyF10VI	GCNNNNNNNGC	7 cut(s)	57, 349, 446, 488, 578, 584, 587
HpyF3I	CTNAG	5 cut(s)	86, 207, 305, 441, 483
HpySE526I	ACGT	2 cut(s)	190, 220
Hsp92I	GRCGYC	1 cut(s)	220
Hsp92II	CATG	4 cut(s)	199, 365, 370, 524
HspAI	GCGC	2 cut(s)	178, 241
KpnI	GGTACC	1 cut(s)	252
Ksp22I	TGATCA	1 cut(s)	469
Kzo9I	GATC	5 cut(s)	69, 93, 168, 276, 469
Lsp1109I	GCAGC	2 cut(s)	574, 602
LweI	GCATC	3 cut(s)	48, 285, 581
MaeII	ACGT	2 cut(s)	190, 220
MaeIII	GTNAC	1 cut(s)	221
MalI	GATC	5 cut(s)	71, 95, 170, 278, 471
MboI	GATC	5 cut(s)	69, 93, 168, 276, 469
MboII	GAAGA	1 cut(s)	349
MflI	RGATCY	3 cut(s)	93, 168, 276
MhlI	GDGCHC	2 cut(s)	190, 306
MlsI	TGGCCA	1 cut(s)	104
MluNI	TGGCCA	1 cut(s)	104
MlyI	GAGTC	2 cut(s)	341, 469
Mox20I	TGGCCA	1 cut(s)	104
MscI	TGGCCA	1 cut(s)	104
MseI	TTAA	3 cut(s)	381, 396, 607
MslI	CAYNNNNRTG	1 cut(s)	371
Msp20I	TGGCCA	1 cut(s)	104
MspA1I	CMGCKG	1 cut(s)	587
MspR9I	CCNGG	3 cut(s)	20, 253, 526
Mva1269I	GAATGC	1 cut(s)	423
MvaI	CCWGG	3 cut(s)	20, 253, 526
MvnI	CGCG	2 cut(s)	57, 178
MwoI	GCNNNNNNNGC	7 cut(s)	57, 349, 446, 488, 578, 584, 587
NdeII	GATC	5 cut(s)	69, 93, 168, 276, 469
NlaIII	CATG	4 cut(s)	199, 365, 370, 524
NlaIV	GGNNCC	2 cut(s)	250, 552
NmuCI	GTSAC	1 cut(s)	221
NspI	RCATGY	2 cut(s)	370, 524
PaeI	GCATGC	1 cut(s)	524
PciI	ACATGT	1 cut(s)	366
PcsI	WCGNNNNNNNCGW	1 cut(s)	325
PctI	GAATGC	1 cut(s)	423
PfoI	TCCNGGA	1 cut(s)	18
PkrI	GCNGC	4 cut(s)	59, 580, 589, 592
PleI	GAGTC	2 cut(s)	340, 468
PpsI	GAGTC	2 cut(s)	340, 468
PpuMI	RGGWCCY	1 cut(s)	551
PscI	ACATGT	1 cut(s)	366
PshAI	GACNNNNGTC	1 cut(s)	459
Psp5II	RGGWCCY	1 cut(s)	551
Psp6I	CCWGG	3 cut(s)	18, 251, 524
PspFI	CCCAGC	2 cut(s)	545, 583
PspGI	CCWGG	3 cut(s)	18, 251, 524
PspN4I	GGNNCC	2 cut(s)	250, 552
PspPI	GGNCC	1 cut(s)	551
PspPPI	RGGWCCY	1 cut(s)	551
PstI	CTGCAG	1 cut(s)	592
PsuI	RGATCY	3 cut(s)	93, 168, 276
PvuII	CAGCTG	1 cut(s)	587
RsaI	GTAC	3 cut(s)	250, 326, 359
RsaNI	GTAC	3 cut(s)	249, 325, 358
RseI	CAYNNNNRTG	1 cut(s)	371
SaqAI	TTAA	3 cut(s)	381, 396, 607
SatI	GCNGC	4 cut(s)	58, 579, 588, 591
Sau3AI	GATC	5 cut(s)	69, 93, 168, 276, 469
Sau96I	GGNCC	1 cut(s)	551
SchI	GAGTC	2 cut(s)	341, 469
ScrFI	CCNGG	3 cut(s)	20, 253, 526
SduI	GDGCHC	2 cut(s)	190, 306
SetI	ASST	8 cut(s)	66, 193, 223, 345, 381, 556, 589, 595
SfaNI	GCATC	3 cut(s)	48, 285, 581
SfcI	CTRYAG	1 cut(s)	588
SinI	GGWCC	1 cut(s)	551
SmiMI	CAYNNNNRTG	1 cut(s)	371
SmlI	CTYRAG	2 cut(s)	44, 555
SmoI	CTYRAG	2 cut(s)	44, 555
SphI	GCATGC	1 cut(s)	524
SsiI	CCGC	6 cut(s)	51, 57, 310, 487, 576, 579
StyD4I	CCNGG	3 cut(s)	18, 251, 524
TaaI	ACNGT	1 cut(s)	329
TaiI	ACGT	2 cut(s)	193, 223
TaqI	TCGA	4 cut(s)	72, 98, 335, 477
TauI	GCSGC	2 cut(s)	60, 581
Tru1I	TTAA	3 cut(s)	381, 396, 607
Tru9I	TTAA	3 cut(s)	381, 396, 607
TseFI	GTSAC	1 cut(s)	221
TseI	GCWGC	2 cut(s)	587, 590
Tsp45I	GTSAC	1 cut(s)	221
TspDTI	ATGAA	4 cut(s)	96, 136, 212, 389
VneI	GTGCAC	1 cut(s)	186
VpaK11BI	GGWCC	1 cut(s)	551
XceI	RCATGY	2 cut(s)	370, 524
ZraI	GACGTC	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.