Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004394

Physical Location & Seq

Genomic Coordinates Reverse (-)

10123682 .. 10125939

Gene Structure 2258 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G130100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGTGTCGCTCAAGCTCCAGAAGCGGCTTTCCGCTAGCGTCCTCAAGTGTGGCCGAGGGAAGGTCTGGCTCGACCCCAATGAGGTCAACGAAATCTCCATGGCCAACTCCAGGCAAAACATTAGGAAACTGGTAAAGGATGGTTTCATCATCAGGAAACCAACAAAGATCCACTCGCGTTCTCGTGCTCGGAGAATGAAGGAGGCTAAGAGGAAGGGTCGTCACTCTGGACATGGTAAGCGTAAGGGTACCAGGGAGGCAAGGCTGCCCACCAAAATCCTCTGGATGAGGAGAATGCGAGTTTTGAGGCGCTTACTCCGTAAGTACCGTGAGTCCAAGAAAATTGACAAGCACATGTACCATGACATGTACATGAAGGTGAAAGGTAATGTCTTTAAGAACAAGCGTGTGCTGATGGAGAGTATTCACAAATCAAAGGCCGAGAAGGCAAGAGAAAAGACTCTTTCTGACCAGTTTGAAGCCAAGCGTGCTAAAAACAAGGCTAGCAGAGAGAGAAAGTTGGCTCGGCGTGAGGAAAGATTGGCACAAGGACCTGGAGAGAGAGCTGCACCAACACCTGCACCCCAACAGGCTGAGGGAGGCGCGAAGAAGGCAAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L19e

Protein Analysis

208

Amino Acids

24.2

Weight (kDa)

11.5

Isoelectric Point (pI)

54.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02780 AT3G16780 AT4G02230
fragaria_vesca	FvH4_2g26110 FvH4_4g18800
malus_domestica	MD03G1292100.v1.1 MD11G1306300.v1.1 MD13G1162700.v1.1 MD16G1134200.v1.1 MD16G1162500.v1.1
prunus_persica	Prupe.1G130100_v2.0.a1 Prupe.1G130100_v2.0.a1 Prupe.8G265100_v2.0.a1
pyrus_communis	pycom03g23130 pycom11g26810 pycom13g13900 pycom16g13780
rosa_chinensis	RchiOBHm_Chr4g0423611 RchiOBHm_Chr6g0294481
rosa_laevigata	RLG00000011865
rosa_multiflora	Rmu_sc0000464.1_g000018
rosa_roxburghii	Rroxscaffold_5G00365820 Rroxscaffold_7G00173290
rosa_rugosa	Rorug04G0189000 Rorug06G0245000 Rorug06G0245100
rosa_samantha	Rh4AG248600 Rh4BG253900 Rh4CG261900 Rh6AG357600
rosa_wichuraiana	Rw4G021290 Rw6G031190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	586
Acc36I	ACCTGC	1 cut(s)	586
Acc65I	GGTACC	1 cut(s)	248
AccB1I	GGYRCC	1 cut(s)	248
AccII	CGCG	2 cut(s)	178, 605
AciI	CCGC	2 cut(s)	25, 33
AclWI	GGATC	1 cut(s)	163
AcoI	YGGCCR	2 cut(s)	52, 102
AfaI	GTAC	4 cut(s)	250, 326, 359, 371
AfiI	CCNNNNNNNGG	3 cut(s)	61, 82, 111
AflIII	ACRYGT	2 cut(s)	354, 366
AgsI	TTSAA	1 cut(s)	479
AjnI	CCWGG	3 cut(s)	110, 251, 553
AluBI	AGCT	2 cut(s)	16, 566
AluI	AGCT	2 cut(s)	16, 566
Alw21I	GWGCWC	1 cut(s)	190
AlwI	GGATC	1 cut(s)	163
AoxI	GGCC	3 cut(s)	52, 102, 438
ApeKI	GCWGC	2 cut(s)	265, 566
Asp718I	GGTACC	1 cut(s)	248
AspLEI	GCGC	2 cut(s)	312, 605
AspS9I	GGNCC	1 cut(s)	551
AsuHPI	GGTGA	1 cut(s)	391
AsuNHI	GCTAGC	2 cut(s)	35, 503
AvaII	GGWCC	1 cut(s)	551
BalI	TGGCCA	1 cut(s)	104
BanI	GGYRCC	1 cut(s)	248
BauI	CACGAG	1 cut(s)	183
Bbv12I	GWGCWC	1 cut(s)	190
BbvCI	CCTCAGC	1 cut(s)	594
BbvI	GCAGC	2 cut(s)	252, 553
BccI	CCATC	2 cut(s)	134, 409
BciT130I	CCWGG	3 cut(s)	112, 253, 555
BfaI	CTAG	2 cut(s)	36, 504
BfoI	RGCGCY	1 cut(s)	313
BfuAI	ACCTGC	1 cut(s)	586
BglI	GCCNNNNNGGC	1 cut(s)	446
BisI	GCNGC	3 cut(s)	26, 266, 567
BlsI	GCNGC	3 cut(s)	27, 267, 568
Bme1390I	CCNGG	3 cut(s)	112, 253, 555
Bme18I	GGWCC	1 cut(s)	551
BmgT120I	GGNCC	1 cut(s)	551
BmiI	GGNNCC	1 cut(s)	250
BmrFI	CCNGG	3 cut(s)	112, 253, 555
BmtI	GCTAGC	2 cut(s)	39, 507
BpmI	CTGGAG	2 cut(s)	94, 576
Bpu10I	CCTNAGC	1 cut(s)	594
BpuEI	CTTGAG	1 cut(s)	29
BsaJI	CCNNGG	3 cut(s)	55, 99, 252
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bsc4I	CCNNNNNNNGG	3 cut(s)	61, 82, 111
Bse1I	ACTGG	2 cut(s)	135, 472
BseBI	CCWGG	3 cut(s)	112, 253, 555
BseDI	CCNNGG	3 cut(s)	55, 99, 252
BseGI	GGATG	2 cut(s)	145, 291
BseLI	CCNNNNNNNGG	3 cut(s)	61, 82, 111
BseMII	CTCAG	1 cut(s)	585
BseNI	ACTGG	2 cut(s)	135, 472
BseRI	GAGGAG	1 cut(s)	304
BseXI	GCAGC	2 cut(s)	252, 553
BsgI	GTGCAG	2 cut(s)	552, 564
Bsh1236I	CGCG	2 cut(s)	178, 605
BshFI	GGCC	3 cut(s)	54, 104, 440
BshNI	GGYRCC	1 cut(s)	248
BsiHKAI	GWGCWC	1 cut(s)	190
BslI	CCNNNNNNNGG	3 cut(s)	61, 82, 111
BsmI	GAATGC	1 cut(s)	300
BsnI	GGCC	3 cut(s)	54, 104, 440
Bsp1286I	GDGCHC	1 cut(s)	190
Bsp1407I	TGTACA	1 cut(s)	369
Bsp143I	GATC	1 cut(s)	168
Bsp19I	CCATGG	1 cut(s)	99
BspACI	CCGC	2 cut(s)	25, 33
BspANI	GGCC	3 cut(s)	54, 104, 440
BspCNI	CTCAG	1 cut(s)	586
BspFNI	CGCG	2 cut(s)	178, 605
BspLI	GGNNCC	1 cut(s)	250
BspMI	ACCTGC	1 cut(s)	586
BspOI	GCTAGC	2 cut(s)	39, 507
BspPI	GGATC	1 cut(s)	163
BspT107I	GGYRCC	1 cut(s)	248
BsrGI	TGTACA	1 cut(s)	369
BsrI	ACTGG	2 cut(s)	135, 472
BssECI	CCNNGG	3 cut(s)	55, 99, 252
BssMI	GATC	1 cut(s)	168
BssSI	CACGAG	1 cut(s)	183
BssT1I	CCWWGG	1 cut(s)	99
Bst2BI	CACGAG	1 cut(s)	183
Bst2UI	CCWGG	3 cut(s)	112, 253, 555
Bst4CI	ACNGT	1 cut(s)	329
BstAUI	TGTACA	1 cut(s)	369
BstC8I	GCNNGC	3 cut(s)	37, 489, 505
BstDEI	CTNAG	2 cut(s)	207, 594
BstDSI	CCRYGG	1 cut(s)	99
BstF5I	GGATG	2 cut(s)	145, 291
BstFNI	CGCG	2 cut(s)	178, 605
BstH2I	RGCGCY	1 cut(s)	313
BstHHI	GCGC	2 cut(s)	312, 605
BstKTI	GATC	1 cut(s)	171
BstMBI	GATC	1 cut(s)	168
BstMWI	GCNNNNNNNGC	4 cut(s)	22, 446, 488, 611
BstNI	CCWGG	3 cut(s)	112, 253, 555
BstNSI	RCATGY	2 cut(s)	358, 370
BstSCI	CCNGG	3 cut(s)	110, 251, 553
BstUI	CGCG	2 cut(s)	178, 605
BstV1I	GCAGC	2 cut(s)	252, 553
BstX2I	RGATCY	1 cut(s)	168
BstYI	RGATCY	1 cut(s)	168
BsuRI	GGCC	3 cut(s)	54, 104, 440
BtgI	CCRYGG	1 cut(s)	99
BtsCI	GGATG	2 cut(s)	145, 291
BveI	ACCTGC	1 cut(s)	586
Cac8I	GCNNGC	3 cut(s)	37, 489, 505
CfoI	GCGC	2 cut(s)	312, 605
Cfr13I	GGNCC	1 cut(s)	551
CseI	GACGC	1 cut(s)	28
Csp6I	GTAC	4 cut(s)	249, 325, 358, 370
CviAII	CATG	6 cut(s)	100, 233, 355, 362, 367, 373
CviQI	GTAC	4 cut(s)	249, 325, 358, 370
DdeI	CTNAG	2 cut(s)	207, 594
DpnI	GATC	1 cut(s)	170
DpnII	GATC	1 cut(s)	168
EaeI	YGGCCR	2 cut(s)	52, 102
Eco130I	CCWWGG	1 cut(s)	99
Eco47I	GGWCC	1 cut(s)	551
EcoO109I	RGGNCCY	1 cut(s)	551
EcoRII	CCWGG	3 cut(s)	110, 251, 553
EcoT14I	CCWWGG	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	99
FaeI	CATG	6 cut(s)	103, 236, 358, 365, 370, 376
FaiI	YATR	6 cut(s)	101, 234, 356, 363, 368, 374
FatI	CATG	6 cut(s)	99, 232, 354, 361, 366, 372
Fnu4HI	GCNGC	3 cut(s)	26, 266, 567
FokI	GGATG	2 cut(s)	152, 298
Fsp4HI	GCNGC	3 cut(s)	26, 266, 567
FspBI	CTAG	2 cut(s)	36, 504
GlaI	GCGC	2 cut(s)	311, 604
GluI	GCNGC	3 cut(s)	26, 266, 567
GsuI	CTGGAG	2 cut(s)	94, 576
HaeII	RGCGCY	1 cut(s)	313
HaeIII	GGCC	3 cut(s)	54, 104, 440
HgaI	GACGC	1 cut(s)	28
HhaI	GCGC	2 cut(s)	312, 605
Hin1II	CATG	6 cut(s)	103, 236, 358, 365, 370, 376
Hin6I	GCGC	2 cut(s)	310, 603
HinP1I	GCGC	2 cut(s)	310, 603
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HinfI	GANTC	2 cut(s)	332, 460
HphI	GGTGA	1 cut(s)	391
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	2 cut(s)	192, 469
Hpy188III	TCNNGA	4 cut(s)	19, 154, 228, 283
Hpy8I	GTNNAC	1 cut(s)	88
HpyAV	CCTTC	6 cut(s)	55, 193, 208, 370, 439, 604
HpyCH4III	ACNGT	1 cut(s)	329
HpyCH4V	TGCA	2 cut(s)	569, 581
HpyF10VI	GCNNNNNNNGC	4 cut(s)	22, 446, 488, 611
HpyF3I	CTNAG	2 cut(s)	207, 594
Hsp92II	CATG	6 cut(s)	103, 236, 358, 365, 370, 376
HspAI	GCGC	2 cut(s)	310, 603
KpnI	GGTACC	1 cut(s)	252
Kzo9I	GATC	1 cut(s)	168
LmnI	GCTCC	1 cut(s)	21
Lsp1109I	GCAGC	2 cut(s)	252, 553
MaeI	CTAG	2 cut(s)	36, 504
MaeIII	GTNAC	1 cut(s)	221
MalI	GATC	1 cut(s)	170
MboI	GATC	1 cut(s)	168
MboII	GAAGA	1 cut(s)	619
MflI	RGATCY	1 cut(s)	168
MhlI	GDGCHC	1 cut(s)	190
MlsI	TGGCCA	1 cut(s)	104
MluCI	AATT	1 cut(s)	342
MluNI	TGGCCA	1 cut(s)	104
MlyI	GAGTC	2 cut(s)	341, 454
Mox20I	TGGCCA	1 cut(s)	104
MscI	TGGCCA	1 cut(s)	104
MseI	TTAA	1 cut(s)	396
MslI	CAYNNNNRTG	2 cut(s)	371, 377
Msp20I	TGGCCA	1 cut(s)	104
MspR9I	CCNGG	3 cut(s)	112, 253, 555
Mva1269I	GAATGC	1 cut(s)	300
MvaI	CCWGG	3 cut(s)	112, 253, 555
MvnI	CGCG	2 cut(s)	178, 605
MwoI	GCNNNNNNNGC	4 cut(s)	22, 446, 488, 611
NcoI	CCATGG	1 cut(s)	99
NdeII	GATC	1 cut(s)	168
NheI	GCTAGC	2 cut(s)	35, 503
NlaIII	CATG	6 cut(s)	103, 236, 358, 365, 370, 376
NlaIV	GGNNCC	1 cut(s)	250
NmeAIII	GCCGAG	3 cut(s)	80, 466, 505
NmuCI	GTSAC	1 cut(s)	221
NspI	RCATGY	2 cut(s)	358, 370
PaqCI	CACCTGC	1 cut(s)	586
PciI	ACATGT	2 cut(s)	354, 366
PctI	GAATGC	1 cut(s)	300
PkrI	GCNGC	3 cut(s)	27, 267, 568
PleI	GAGTC	2 cut(s)	340, 454
PpsI	GAGTC	2 cut(s)	340, 454
PpuMI	RGGWCCY	1 cut(s)	551
PscI	ACATGT	2 cut(s)	354, 366
Psp5II	RGGWCCY	1 cut(s)	551
Psp6I	CCWGG	3 cut(s)	110, 251, 553
PspGI	CCWGG	3 cut(s)	110, 251, 553
PspN4I	GGNNCC	1 cut(s)	250
PspPI	GGNCC	1 cut(s)	551
PspPPI	RGGWCCY	1 cut(s)	551
PsuI	RGATCY	1 cut(s)	168
RsaI	GTAC	4 cut(s)	250, 326, 359, 371
RsaNI	GTAC	4 cut(s)	249, 325, 358, 370
RseI	CAYNNNNRTG	2 cut(s)	371, 377
SaqAI	TTAA	1 cut(s)	396
SatI	GCNGC	3 cut(s)	26, 266, 567
Sau3AI	GATC	1 cut(s)	168
Sau96I	GGNCC	1 cut(s)	551
SchI	GAGTC	2 cut(s)	341, 454
ScrFI	CCNGG	3 cut(s)	112, 253, 555
SduI	GDGCHC	1 cut(s)	190
SetI	ASST	8 cut(s)	18, 66, 87, 381, 388, 556, 568, 580
SinI	GGWCC	1 cut(s)	551
SmiMI	CAYNNNNRTG	2 cut(s)	371, 377
SmlI	CTYRAG	2 cut(s)	11, 44
SmoI	CTYRAG	2 cut(s)	11, 44
Sse9I	AATT	1 cut(s)	342
SsiI	CCGC	2 cut(s)	25, 33
SspMI	CTAG	2 cut(s)	36, 504
StyD4I	CCNGG	3 cut(s)	110, 251, 553
StyI	CCWWGG	1 cut(s)	99
TaaI	ACNGT	1 cut(s)	329
TaqI	TCGA	1 cut(s)	72
TasI	AATT	1 cut(s)	342
TatI	WGTACW	1 cut(s)	369
TauI	GCSGC	1 cut(s)	28
Tru1I	TTAA	1 cut(s)	396
Tru9I	TTAA	1 cut(s)	396
TseFI	GTSAC	1 cut(s)	221
TseI	GCWGC	2 cut(s)	265, 566
Tsp45I	GTSAC	1 cut(s)	221
TspDTI	ATGAA	3 cut(s)	136, 212, 389
TspGWI	ACGGA	1 cut(s)	308
VpaK11BI	GGWCC	1 cut(s)	551
XceI	RCATGY	2 cut(s)	358, 370
XspI	CTAG	2 cut(s)	36, 504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.