Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0004394

Physical Location & Seq

Genomic Coordinates Forward (+)

56137617 .. 56140020

Gene Structure 2404 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG248600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGTGTCGTTGAAGCTCCAGAAGCGGCTAGCCGCTAGCGTCCTCAAGTGCGGACGTGGCAAGGTCTGGCTCGACCCCAATGAAGGCAACGAAATCTCCATGGCCAATTCCAGGCAAAACATTAGGAAGCTCGTGAAGGATGGTTTCGTCATCCGGAAACCAACAAAGATCCACTCCCGTTCTCGTGCTCGGAGAATGGCAGTGGCCAAGAGGAAGGGACGTCACTCTGGATATGGTAAGCGCAAGGGTACCAGGGAGGCAAGGCTGCCAACTAAGATACTCTGGATGAGGAGGATGAGGGTACTGAGGCGCTTGCTCCGTAAGTACCGAGAATCCAAGAAAATTGACAAGCACATGTACCATGATATGTACATGAAGGTGAAGGGTAATGTTTTCAAGAACAAGCGTGTGCTGATGGAGAGTATTCACAAGTCAAAGGCTGAGAAGGCAAGAGAGAAAACTCTGTCCGACCAGTTTGAGGCCAAACGTGCCAAAAACAAGGCTAGCAGAGAGAGGAAGTTAGCTCGTAGGGAGGAACGCTTGGCACAAGTAAGTACAGACATTTATGAATCCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L19e

Protein Analysis

192

Amino Acids

22.73

Weight (kDa)

11.36

Isoelectric Point (pI)

53.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L19e	PF01280	4 - 54	2e-26	Ribosomal protein L19e, N-terminal domain
Ribosomal_L19e_C	PF25476	56 - 146	8.1e-35	Ribosomal protein L19e, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02780 AT3G16780 AT4G02230
fragaria_vesca	FvH4_2g26110 FvH4_4g18800
malus_domestica	MD03G1292100.v1.1 MD11G1306300.v1.1 MD13G1162700.v1.1 MD16G1134200.v1.1 MD16G1162500.v1.1
prunus_persica	Prupe.1G130100_v2.0.a1 Prupe.1G130100_v2.0.a1 Prupe.8G265100_v2.0.a1
pyrus_communis	pycom03g23130 pycom11g26810 pycom13g13900 pycom16g13780
rosa_chinensis	RchiOBHm_Chr4g0423611 RchiOBHm_Chr6g0294481
rosa_laevigata	RLG00000011865
rosa_multiflora	Rmu_sc0000464.1_g000018
rosa_roxburghii	Rroxscaffold_5G00365820 Rroxscaffold_7G00173290
rosa_rugosa	Rorug04G0189000 Rorug06G0245000 Rorug06G0245100
rosa_samantha	Rh4AG248600 Rh4BG253900 Rh4CG261900 Rh6AG357600
rosa_wichuraiana	Rw4G021290 Rw6G031190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	223
Acc65I	GGTACC	1 cut(s)	248
AccB1I	GGYRCC	1 cut(s)	248
AccIII	TCCGGA	1 cut(s)	153
AciI	CCGC	3 cut(s)	25, 33, 51
AclWI	GGATC	1 cut(s)	163
AcoI	YGGCCR	2 cut(s)	102, 204
AcyI	GRCGYC	1 cut(s)	220
AfaI	GTAC	6 cut(s)	250, 303, 326, 359, 371, 556
AfiI	CCNNNNNNNGG	3 cut(s)	83, 111, 478
AflIII	ACRYGT	1 cut(s)	354
AgsI	TTSAA	2 cut(s)	13, 397
AjiI	CACGTC	1 cut(s)	56
AjnI	CCWGG	2 cut(s)	110, 251
AluBI	AGCT	3 cut(s)	16, 130, 524
AluI	AGCT	3 cut(s)	16, 130, 524
Alw21I	GWGCWC	1 cut(s)	190
AlwI	GGATC	1 cut(s)	163
Aor13HI	TCCGGA	1 cut(s)	153
AoxI	GGCC	3 cut(s)	102, 204, 480
ApeKI	GCWGC	1 cut(s)	265
Asp718I	GGTACC	1 cut(s)	248
AspLEI	GCGC	2 cut(s)	243, 312
AsuHPI	GGTGA	1 cut(s)	391
AsuNHI	GCTAGC	3 cut(s)	28, 35, 503
BalI	TGGCCA	2 cut(s)	104, 206
BanI	GGYRCC	1 cut(s)	248
BauI	CACGAG	2 cut(s)	131, 183
Bbv12I	GWGCWC	1 cut(s)	190
BbvI	GCAGC	1 cut(s)	252
BccI	CCATC	2 cut(s)	134, 409
BciT130I	CCWGG	2 cut(s)	112, 253
BfaI	CTAG	3 cut(s)	29, 36, 504
BfoI	RGCGCY	1 cut(s)	313
BisI	GCNGC	3 cut(s)	26, 33, 266
BlsI	GCNGC	3 cut(s)	27, 34, 267
Bme1390I	CCNGG	2 cut(s)	112, 253
BmgBI	CACGTC	1 cut(s)	56
BmiI	GGNNCC	1 cut(s)	250
BmrFI	CCNGG	2 cut(s)	112, 253
BmtI	GCTAGC	3 cut(s)	32, 39, 507
BpuEI	CTTGAG	1 cut(s)	29
BsaHI	GRCGYC	1 cut(s)	220
BsaJI	CCNNGG	2 cut(s)	99, 252
BsaWI	WCCGGW	1 cut(s)	153
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bsc4I	CCNNNNNNNGG	3 cut(s)	83, 111, 478
Bse1I	ACTGG	1 cut(s)	472
BseAI	TCCGGA	1 cut(s)	153
BseBI	CCWGG	2 cut(s)	112, 253
BseDI	CCNNGG	2 cut(s)	99, 252
BseGI	GGATG	4 cut(s)	145, 150, 291, 300
BseLI	CCNNNNNNNGG	3 cut(s)	83, 111, 478
BseMII	CTCAG	2 cut(s)	296, 432
BseNI	ACTGG	1 cut(s)	472
BseRI	GAGGAG	1 cut(s)	304
BseXI	GCAGC	1 cut(s)	252
BshFI	GGCC	3 cut(s)	104, 206, 482
BshNI	GGYRCC	1 cut(s)	248
BsiHKAI	GWGCWC	1 cut(s)	190
BsiSI	CCGG	1 cut(s)	154
BslFI	GGGAC	1 cut(s)	231
BslI	CCNNNNNNNGG	3 cut(s)	83, 111, 478
BsmFI	GGGAC	1 cut(s)	231
BsnI	GGCC	3 cut(s)	104, 206, 482
Bsp1286I	GDGCHC	1 cut(s)	190
Bsp13I	TCCGGA	1 cut(s)	153
Bsp1407I	TGTACA	1 cut(s)	369
Bsp143I	GATC	1 cut(s)	168
Bsp19I	CCATGG	1 cut(s)	99
BspACI	CCGC	3 cut(s)	25, 33, 51
BspANI	GGCC	3 cut(s)	104, 206, 482
BspCNI	CTCAG	2 cut(s)	297, 433
BspEI	TCCGGA	1 cut(s)	153
BspLI	GGNNCC	1 cut(s)	250
BspOI	GCTAGC	3 cut(s)	32, 39, 507
BspPI	GGATC	1 cut(s)	163
BspT107I	GGYRCC	1 cut(s)	248
BsrGI	TGTACA	1 cut(s)	369
BsrI	ACTGG	1 cut(s)	472
BssECI	CCNNGG	2 cut(s)	99, 252
BssMI	GATC	1 cut(s)	168
BssNI	GRCGYC	1 cut(s)	220
BssSI	CACGAG	2 cut(s)	131, 183
BssT1I	CCWWGG	1 cut(s)	99
Bst2BI	CACGAG	2 cut(s)	131, 183
Bst2UI	CCWGG	2 cut(s)	112, 253
BstACI	GRCGYC	1 cut(s)	220
BstAUI	TGTACA	1 cut(s)	369
BstC8I	GCNNGC	4 cut(s)	30, 37, 314, 505
BstDEI	CTNAG	3 cut(s)	273, 305, 441
BstDSI	CCRYGG	1 cut(s)	99
BstF5I	GGATG	4 cut(s)	145, 150, 291, 300
BstH2I	RGCGCY	1 cut(s)	313
BstHHI	GCGC	2 cut(s)	243, 312
BstKTI	GATC	1 cut(s)	171
BstMBI	GATC	1 cut(s)	168
BstMWI	GCNNNNNNNGC	4 cut(s)	22, 57, 446, 488
BstNI	CCWGG	2 cut(s)	112, 253
BstNSI	RCATGY	1 cut(s)	358
BstSCI	CCNGG	2 cut(s)	110, 251
BstV1I	GCAGC	1 cut(s)	252
BstX2I	RGATCY	1 cut(s)	168
BstYI	RGATCY	1 cut(s)	168
BsuRI	GGCC	3 cut(s)	104, 206, 482
BtgI	CCRYGG	1 cut(s)	99
BtrI	CACGTC	1 cut(s)	56
BtsCI	GGATG	4 cut(s)	145, 150, 291, 300
BtsI	GCAGTG	1 cut(s)	207
BtsIMutI	CAGTG	1 cut(s)	207
Cac8I	GCNNGC	4 cut(s)	30, 37, 314, 505
CfoI	GCGC	2 cut(s)	243, 312
CseI	GACGC	1 cut(s)	28
Csp6I	GTAC	6 cut(s)	249, 302, 325, 358, 370, 555
CviAII	CATG	4 cut(s)	100, 355, 362, 373
CviQI	GTAC	6 cut(s)	249, 302, 325, 358, 370, 555
DdeI	CTNAG	3 cut(s)	273, 305, 441
DpnI	GATC	1 cut(s)	170
DpnII	GATC	1 cut(s)	168
EaeI	YGGCCR	2 cut(s)	102, 204
Eco130I	CCWWGG	1 cut(s)	99
EcoRII	CCWGG	2 cut(s)	110, 251
EcoT14I	CCWWGG	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	99
FaeI	CATG	4 cut(s)	103, 358, 365, 376
FaiI	YATR	7 cut(s)	101, 234, 356, 363, 368, 374, 567
FaqI	GGGAC	1 cut(s)	231
FatI	CATG	4 cut(s)	99, 354, 361, 372
Fnu4HI	GCNGC	3 cut(s)	26, 33, 266
FokI	GGATG	4 cut(s)	137, 152, 298, 307
Fsp4HI	GCNGC	3 cut(s)	26, 33, 266
FspBI	CTAG	3 cut(s)	29, 36, 504
GlaI	GCGC	2 cut(s)	242, 311
GluI	GCNGC	3 cut(s)	26, 33, 266
HaeII	RGCGCY	1 cut(s)	313
HaeIII	GGCC	3 cut(s)	104, 206, 482
HapII	CCGG	1 cut(s)	154
HgaI	GACGC	1 cut(s)	28
HhaI	GCGC	2 cut(s)	243, 312
Hin1I	GRCGYC	1 cut(s)	220
Hin1II	CATG	4 cut(s)	103, 358, 365, 376
Hin6I	GCGC	2 cut(s)	241, 310
HinP1I	GCGC	2 cut(s)	241, 310
HinfI	GANTC	2 cut(s)	332, 569
HpaII	CCGG	1 cut(s)	154
HphI	GGTGA	1 cut(s)	391
Hpy188I	TCNGA	2 cut(s)	192, 469
Hpy188III	TCNNGA	6 cut(s)	19, 133, 154, 228, 283, 397
HpyAV	CCTTC	6 cut(s)	77, 130, 208, 370, 376, 439
HpyCH4IV	ACGT	3 cut(s)	55, 220, 487
HpyF10VI	GCNNNNNNNGC	4 cut(s)	22, 57, 446, 488
HpyF3I	CTNAG	3 cut(s)	273, 305, 441
HpySE526I	ACGT	3 cut(s)	55, 220, 487
Hsp92I	GRCGYC	1 cut(s)	220
Hsp92II	CATG	4 cut(s)	103, 358, 365, 376
HspAI	GCGC	2 cut(s)	241, 310
Kpn2I	TCCGGA	1 cut(s)	153
KpnI	GGTACC	1 cut(s)	252
Kzo9I	GATC	1 cut(s)	168
LmnI	GCTCC	2 cut(s)	21, 321
Lsp1109I	GCAGC	1 cut(s)	252
MaeI	CTAG	3 cut(s)	29, 36, 504
MaeII	ACGT	3 cut(s)	55, 220, 487
MaeIII	GTNAC	1 cut(s)	221
MalI	GATC	1 cut(s)	170
MboI	GATC	1 cut(s)	168
MflI	RGATCY	1 cut(s)	168
MhlI	GDGCHC	1 cut(s)	190
MlsI	TGGCCA	2 cut(s)	104, 206
MluCI	AATT	2 cut(s)	106, 342
MluNI	TGGCCA	2 cut(s)	104, 206
MmeI	TCCRAC	1 cut(s)	492
Mox20I	TGGCCA	2 cut(s)	104, 206
MroI	TCCGGA	1 cut(s)	153
MscI	TGGCCA	2 cut(s)	104, 206
MslI	CAYNNNNRTG	1 cut(s)	377
Msp20I	TGGCCA	2 cut(s)	104, 206
MspI	CCGG	1 cut(s)	154
MspR9I	CCNGG	2 cut(s)	112, 253
MvaI	CCWGG	2 cut(s)	112, 253
MwoI	GCNNNNNNNGC	4 cut(s)	22, 57, 446, 488
NcoI	CCATGG	1 cut(s)	99
NdeII	GATC	1 cut(s)	168
NheI	GCTAGC	3 cut(s)	28, 35, 503
NlaIII	CATG	4 cut(s)	103, 358, 365, 376
NlaIV	GGNNCC	1 cut(s)	250
NmuCI	GTSAC	1 cut(s)	221
NspI	RCATGY	1 cut(s)	358
PciI	ACATGT	1 cut(s)	354
PfeI	GAWTC	2 cut(s)	332, 569
PkrI	GCNGC	3 cut(s)	27, 34, 267
PscI	ACATGT	1 cut(s)	354
Psp6I	CCWGG	2 cut(s)	110, 251
PspGI	CCWGG	2 cut(s)	110, 251
PspN4I	GGNNCC	1 cut(s)	250
PsuI	RGATCY	1 cut(s)	168
RsaI	GTAC	6 cut(s)	250, 303, 326, 359, 371, 556
RsaNI	GTAC	6 cut(s)	249, 302, 325, 358, 370, 555
RseI	CAYNNNNRTG	1 cut(s)	377
SatI	GCNGC	3 cut(s)	26, 33, 266
Sau3AI	GATC	1 cut(s)	168
ScrFI	CCNGG	2 cut(s)	112, 253
SduI	GDGCHC	1 cut(s)	190
SetI	ASST	8 cut(s)	18, 58, 66, 132, 223, 381, 490, 526
SmiMI	CAYNNNNRTG	1 cut(s)	377
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
Sse9I	AATT	2 cut(s)	106, 342
SsiI	CCGC	3 cut(s)	25, 33, 51
SspMI	CTAG	3 cut(s)	29, 36, 504
StyD4I	CCNGG	2 cut(s)	110, 251
StyI	CCWWGG	1 cut(s)	99
TaiI	ACGT	3 cut(s)	58, 223, 490
TaqI	TCGA	1 cut(s)	72
TasI	AATT	2 cut(s)	106, 342
TatI	WGTACW	2 cut(s)	369, 554
TauI	GCSGC	2 cut(s)	28, 35
TfiI	GAWTC	2 cut(s)	332, 569
TscAI	CASTG	1 cut(s)	207
TseFI	GTSAC	1 cut(s)	221
TseI	GCWGC	1 cut(s)	265
Tsp45I	GTSAC	1 cut(s)	221
TspDTI	ATGAA	2 cut(s)	96, 389
TspGWI	ACGGA	1 cut(s)	308
TspRI	CASTG	1 cut(s)	207
XceI	RCATGY	1 cut(s)	358
XspI	CTAG	3 cut(s)	29, 36, 504
ZraI	GACGTC	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.