Rh6AG357600

Belongs to the eukaryotic ribosomal protein eL19 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0004394
Physical Location & Seq
Forward (+)
55671280 .. 55673149
1870 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG357600.1

Sequence Viewer

Length: 576 bp
ATGTTTATAATGAAATATGTTGGATGTCTTTGCTGGTGTTGCTTGCTTAATGATGGTGTGGATTGTCAAATTGCAGGCCAAAACATAAGGAAGTTGGTCAAGGATGGGTTCATCATCAGGAAGCCCACCAAGATTCACTCGCGCTCCCGTGCACGTCGTATGAAGGAGGCCAAGAGAAAGGGCCGTCACTCTGGATATGGTAAGCGTAAGGGTACCAGGGAGGCAAGGCTGCCAACCAAAATCCTCTGGATGCGCAGGATGCGTGTCCTCAGGCGCTTGCTTCGCAAGTACCGGGAGGCAAAGAAGATTGACAAGCACATGTACCATGACATGTACATGAAGGTTAAGGGTAATGTTTTCAAGAACAAGAGAGTGCTCATGGAGAGCATCCACAAGTCTAAGGCCGAGAAGGCAAGAGAGAAGACTTTGTCTGACCAGTTTGAAGCTAAGCGTGCCAAGAACAAGGCTAGCAGGGAGAGGAAAAATGCTAGGAGGGAAGAACGTTTGGCTCAGGGACCTGGAGAGAGAGCTCCACCAGCTGACTCAACACAGGCATCTAAGAAATCCAAGAAGTGA

Protein Analysis

191

Amino Acids

22.54

Weight (kDa)

10.91

Isoelectric Point (pI)

51.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L19e_C PF25476 44 - 134 3.2e-35 Ribosomal protein L19e, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 8
Acc16I TGCGCA 1 cut(s) 254
Acc65I GGTACC 1 cut(s) 212
AccB1I GGYRCC 1 cut(s) 212
AccII CGCG 1 cut(s) 142
AclI AACGTT 1 cut(s) 502
AfaI GTAC 4 cut(s) 214, 290, 323, 335
AflIII ACRYGT 2 cut(s) 318, 330
AgsI TTSAA 2 cut(s) 361, 443
AjiI CACGTC 1 cut(s) 155
AjnI CCWGG 2 cut(s) 215, 517
AluBI AGCT 3 cut(s) 446, 530, 539
AluI AGCT 3 cut(s) 446, 530, 539
Alw21I GWGCWC 3 cut(s) 154, 378, 532
Alw44I GTGCAC 1 cut(s) 150
AoxI GGCC 4 cut(s) 76, 168, 181, 402
ApaLI GTGCAC 1 cut(s) 150
ApeKI GCWGC 1 cut(s) 229
Asp718I GGTACC 1 cut(s) 212
AspLEI GCGC 3 cut(s) 144, 255, 276
AspS9I GGNCC 2 cut(s) 181, 515
AsuC2I CCSGG 1 cut(s) 293
AsuNHI GCTAGC 1 cut(s) 467
AvaII GGWCC 1 cut(s) 515
AxyI CCTNAGG 1 cut(s) 269
BaeGI GKGCMC 1 cut(s) 154
BanI GGYRCC 1 cut(s) 212
BanII GRGCYC 1 cut(s) 532
BbsI GAAGAC 1 cut(s) 428
Bbv12I GWGCWC 3 cut(s) 154, 378, 532
BbvI GCAGC 1 cut(s) 216
BccI CCATC 2 cut(s) 47, 98
BceAI ACGGC 1 cut(s) 168
BciT130I CCWGG 2 cut(s) 217, 519
BcnI CCSGG 1 cut(s) 293
BfaI CTAG 2 cut(s) 468, 489
BfoI RGCGCY 1 cut(s) 277
BglI GCCNNNNNGGC 1 cut(s) 410
BisI GCNGC 1 cut(s) 230
BlpI GCTNAGC 1 cut(s) 447
BlsI GCNGC 1 cut(s) 231
Bme1390I CCNGG 3 cut(s) 217, 293, 519
Bme18I GGWCC 1 cut(s) 515
BmgBI CACGTC 1 cut(s) 155
BmgT120I GGNCC 2 cut(s) 181, 515
BmiI GGNNCC 2 cut(s) 214, 516
BmrFI CCNGG 3 cut(s) 217, 293, 519
BmsI GCATC 4 cut(s) 240, 249, 396, 563
BmtI GCTAGC 1 cut(s) 471
BpiI GAAGAC 1 cut(s) 428
BpmI CTGGAG 1 cut(s) 540
Bpu10I CCTNAGC 1 cut(s) 510
Bpu1102I GCTNAGC 1 cut(s) 447
BpuMI CCSGG 1 cut(s) 293
BsaJI CCNNGG 1 cut(s) 216
BsaXI ACNNNNNCTCC 2 cut(s) 128, 158
Bse1I ACTGG 1 cut(s) 436
Bse21I CCTNAGG 1 cut(s) 269
BseBI CCWGG 2 cut(s) 217, 519
BseDI CCNNGG 1 cut(s) 216
BseGI GGATG 5 cut(s) 29, 109, 255, 264, 387
BseMII CTCAG 2 cut(s) 283, 524
BseNI ACTGG 1 cut(s) 436
BseSI GKGCMC 1 cut(s) 154
BseXI GCAGC 1 cut(s) 216
Bsh1236I CGCG 1 cut(s) 142
BshFI GGCC 4 cut(s) 78, 170, 183, 404
BshNI GGYRCC 1 cut(s) 212
BsiHKAI GWGCWC 3 cut(s) 154, 378, 532
BsiSI CCGG 1 cut(s) 292
BslFI GGGAC 1 cut(s) 528
BsmFI GGGAC 1 cut(s) 528
BsnI GGCC 4 cut(s) 78, 170, 183, 404
Bsp1286I GDGCHC 3 cut(s) 154, 378, 532
Bsp1407I TGTACA 1 cut(s) 333
Bsp1720I GCTNAGC 1 cut(s) 447
BspANI GGCC 4 cut(s) 78, 170, 183, 404
BspCNI CTCAG 2 cut(s) 282, 523
BspFNI CGCG 1 cut(s) 142
BspLI GGNNCC 2 cut(s) 214, 516
BspOI GCTAGC 1 cut(s) 471
BspT107I GGYRCC 1 cut(s) 212
BsrGI TGTACA 1 cut(s) 333
BsrI ACTGG 1 cut(s) 436
BssECI CCNNGG 1 cut(s) 216
Bst2UI CCWGG 2 cut(s) 217, 519
BstAUI TGTACA 1 cut(s) 333
BstC8I GCNNGC 5 cut(s) 44, 76, 278, 453, 469
BstDEI CTNAG 5 cut(s) 269, 399, 447, 510, 558
BstF5I GGATG 5 cut(s) 29, 109, 255, 264, 387
BstFNI CGCG 1 cut(s) 142
BstH2I RGCGCY 1 cut(s) 277
BstHHI GCGC 3 cut(s) 144, 255, 276
BstMWI GCNNNNNNNGC 6 cut(s) 39, 259, 282, 410, 452, 536
BstNI CCWGG 2 cut(s) 217, 519
BstNSI RCATGY 2 cut(s) 322, 334
BstSCI CCNGG 3 cut(s) 215, 291, 517
BstSLI GKGCMC 1 cut(s) 154
BstUI CGCG 1 cut(s) 142
BstV1I GCAGC 1 cut(s) 216
BstV2I GAAGAC 1 cut(s) 428
Bsu36I CCTNAGG 1 cut(s) 269
BsuRI GGCC 4 cut(s) 78, 170, 183, 404
BtrI CACGTC 1 cut(s) 155
BtsCI GGATG 5 cut(s) 29, 109, 255, 264, 387
Cac8I GCNNGC 5 cut(s) 44, 76, 278, 453, 469
CfoI GCGC 3 cut(s) 144, 255, 276
Cfr13I GGNCC 2 cut(s) 181, 515
Csp6I GTAC 4 cut(s) 213, 289, 322, 334
CviAII CATG 5 cut(s) 319, 326, 331, 337, 379
CviQI GTAC 4 cut(s) 213, 289, 322, 334
DdeI CTNAG 5 cut(s) 269, 399, 447, 510, 558
Ecl136II GAGCTC 1 cut(s) 530
Eco24I GRGCYC 1 cut(s) 532
Eco47I GGWCC 1 cut(s) 515
Eco53kI GAGCTC 1 cut(s) 530
Eco81I CCTNAGG 1 cut(s) 269
EcoICRI GAGCTC 1 cut(s) 530
EcoO109I RGGNCCY 1 cut(s) 515
EcoRII CCWGG 2 cut(s) 215, 517
EcoT38I GRGCYC 1 cut(s) 532
FaeI CATG 5 cut(s) 322, 329, 334, 340, 382
FaqI GGGAC 1 cut(s) 528
FatI CATG 5 cut(s) 318, 325, 330, 336, 378
Fnu4HI GCNGC 1 cut(s) 230
FokI GGATG 5 cut(s) 36, 116, 262, 271, 374
FriOI GRGCYC 1 cut(s) 532
Fsp4HI GCNGC 1 cut(s) 230
FspBI CTAG 2 cut(s) 468, 489
FspI TGCGCA 1 cut(s) 254
GlaI GCGC 3 cut(s) 143, 254, 275
GluI GCNGC 1 cut(s) 230
GsuI CTGGAG 1 cut(s) 540
HaeII RGCGCY 1 cut(s) 277
HaeIII GGCC 4 cut(s) 78, 170, 183, 404
HapII CCGG 1 cut(s) 292
HhaI GCGC 3 cut(s) 144, 255, 276
Hin1II CATG 5 cut(s) 322, 329, 334, 340, 382
Hin6I GCGC 3 cut(s) 142, 253, 274
HinP1I GCGC 3 cut(s) 142, 253, 274
HinfI GANTC 2 cut(s) 133, 542
HpaII CCGG 1 cut(s) 292
Hpy166II GTNNAC 1 cut(s) 152
Hpy188I TCNGA 1 cut(s) 433
Hpy188III TCNNGA 4 cut(s) 118, 192, 247, 361
Hpy8I GTNNAC 1 cut(s) 152
Hpy99I CGWCG 1 cut(s) 159
HpyAV CCTTC 3 cut(s) 157, 334, 403
HpyCH4IV ACGT 2 cut(s) 154, 502
HpyCH4V TGCA 2 cut(s) 74, 152
HpyF10VI GCNNNNNNNGC 6 cut(s) 39, 259, 282, 410, 452, 536
HpyF3I CTNAG 5 cut(s) 269, 399, 447, 510, 558
HpySE526I ACGT 2 cut(s) 154, 502
Hsp92II CATG 5 cut(s) 322, 329, 334, 340, 382
HspAI GCGC 3 cut(s) 142, 253, 274
KpnI GGTACC 1 cut(s) 216
LmnI GCTCC 2 cut(s) 149, 535
Lsp1109I GCAGC 1 cut(s) 216
LweI GCATC 4 cut(s) 240, 249, 396, 563
MaeI CTAG 2 cut(s) 468, 489
MaeII ACGT 2 cut(s) 154, 502
MaeIII GTNAC 1 cut(s) 185
MboII GAAGA 3 cut(s) 316, 433, 509
MhlI GDGCHC 3 cut(s) 154, 378, 532
MluCI AATT 1 cut(s) 69
MlyI GAGTC 1 cut(s) 536
MnlI CCTC 7 cut(s) 160, 214, 254, 278, 289, 471, 486
MseI TTAA 2 cut(s) 48, 345
MslI CAYNNNNRTG 1 cut(s) 335
MspA1I CMGCKG 1 cut(s) 539
MspI CCGG 1 cut(s) 292
MspR9I CCNGG 3 cut(s) 217, 293, 519
MvaI CCWGG 2 cut(s) 217, 519
MvnI CGCG 1 cut(s) 142
MwoI GCNNNNNNNGC 6 cut(s) 39, 259, 282, 410, 452, 536
NciI CCSGG 1 cut(s) 293
NheI GCTAGC 1 cut(s) 467
NlaIII CATG 5 cut(s) 322, 329, 334, 340, 382
NlaIV GGNNCC 2 cut(s) 214, 516
NmeAIII GCCGAG 1 cut(s) 430
NmuCI GTSAC 1 cut(s) 185
NsbI TGCGCA 1 cut(s) 254
NspI RCATGY 2 cut(s) 322, 334
PciI ACATGT 2 cut(s) 318, 330
PfeI GAWTC 1 cut(s) 133
PflFI GACNNNGTC 1 cut(s) 427
PkrI GCNGC 1 cut(s) 231
PleI GAGTC 1 cut(s) 536
PpsI GAGTC 1 cut(s) 536
PpuMI RGGWCCY 1 cut(s) 515
PscI ACATGT 2 cut(s) 318, 330
PsiI TTATAA 1 cut(s) 8
Psp124BI GAGCTC 1 cut(s) 532
Psp1406I AACGTT 1 cut(s) 502
Psp5II RGGWCCY 1 cut(s) 515
Psp6I CCWGG 2 cut(s) 215, 517
PspGI CCWGG 2 cut(s) 215, 517
PspN4I GGNNCC 2 cut(s) 214, 516
PspPI GGNCC 2 cut(s) 181, 515
PspPPI RGGWCCY 1 cut(s) 515
PsyI GACNNNGTC 1 cut(s) 427
PvuII CAGCTG 1 cut(s) 539
RsaI GTAC 4 cut(s) 214, 290, 323, 335
RsaNI GTAC 4 cut(s) 213, 289, 322, 334
RseI CAYNNNNRTG 1 cut(s) 335
SacI GAGCTC 1 cut(s) 532
SaqAI TTAA 2 cut(s) 48, 345
SatI GCNGC 1 cut(s) 230
Sau96I GGNCC 2 cut(s) 181, 515
SchI GAGTC 1 cut(s) 536
ScrFI CCNGG 3 cut(s) 217, 293, 519
SduI GDGCHC 3 cut(s) 154, 378, 532
SetI ASST 7 cut(s) 157, 345, 448, 505, 520, 532, 541
SfaNI GCATC 4 cut(s) 240, 249, 396, 563
SinI GGWCC 1 cut(s) 515
SmiMI CAYNNNNRTG 1 cut(s) 335
Sse9I AATT 1 cut(s) 69
SspMI CTAG 2 cut(s) 468, 489
SstI GAGCTC 1 cut(s) 532
StyD4I CCNGG 3 cut(s) 215, 291, 517
TaiI ACGT 2 cut(s) 157, 505
TasI AATT 1 cut(s) 69
TatI WGTACW 1 cut(s) 333
TfiI GAWTC 1 cut(s) 133
Tru1I TTAA 2 cut(s) 48, 345
Tru9I TTAA 2 cut(s) 48, 345
TseFI GTSAC 1 cut(s) 185
TseI GCWGC 1 cut(s) 229
Tsp45I GTSAC 1 cut(s) 185
TspDTI ATGAA 4 cut(s) 26, 100, 176, 353
Tth111I GACNNNGTC 1 cut(s) 427
VneI GTGCAC 1 cut(s) 150
VpaK11BI GGWCC 1 cut(s) 515
XceI RCATGY 2 cut(s) 322, 334
XspI CTAG 2 cut(s) 468, 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.