AT1G02870

Ribosome biogenesis protein Nop16

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0009327
Physical Location & Seq
Reverse (-)
637214 .. 638681
1468 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G02870.1

Sequence Viewer

Length: 582 bp
ATGGCGAGGTCGAGAAGAAAGTACAGGAACTCTAGGGCTAAAGTTCGCGTTGCTCTTCCTAAGAAGAACCCTAATATCTTTAAACCAGCTTTCAACTTCCCTCCCAAGCTCCGCGCTCTCATGGGAGACGATGTCCCTGAATGGGACGATCAAGCTAGCGTTATCCAGAACTACAAATCCTTTGGCGTCATCTCTAACCCTAATTTGCTTGGTATCCGAGCTCGTACCGACCATATGATTCAGGATGATTCCCTCAACGTTCCTCCACCTGTAGAGCCACCGACTGATGATCCTATTGCTAAGGAGTTCGAGCCCATTGATTCTGGAAGCGAACTTGAGGAAGACGATCTTAAGACAGCATTGGGGAAGCAAAGAAAAGATGGAAAGAGTGCTCCTTTACAGCCGCTTACCACTATGCAACGCACACATATAAGGCGTTTGGTGGAGAAACATGGTGATGACATTGAGGGCATGTACCGAGACAGGAAGCTAAACTCGATGCAGCATTCGGTTGCAACACTTCGAAAGCTATGTACGAGATATCAGATTTACAAAGACAAGAACCCGATTTTAGTTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nop16

Protein Analysis

193

Amino Acids

22.1

Weight (kDa)

9.59

Isoelectric Point (pI)

47.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nop16 PF09420 112 - 181 1.3e-16 Ribosome biogenesis protein Nop16
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 48, 114
AciI CCGC 2 cut(s) 112, 404
AclI AACGTT 1 cut(s) 258
AclWI GGATC 1 cut(s) 284
AcyI GRCGYC 1 cut(s) 186
AfaI GTAC 4 cut(s) 23, 226, 476, 535
AfiI CCNNNNNNNGG 1 cut(s) 142
AflII CTTAAG 1 cut(s) 350
AgsI TTSAA 1 cut(s) 94
AloI GAACNNNNNNTCC 2 cut(s) 161, 193
AluBI AGCT 6 cut(s) 89, 109, 155, 221, 490, 529
AluI AGCT 6 cut(s) 89, 109, 155, 221, 490, 529
Alw21I GWGCWC 2 cut(s) 223, 394
Alw26I GTCTC 2 cut(s) 120, 474
AlwI GGATC 1 cut(s) 284
ApeKI GCWGC 1 cut(s) 502
AspLEI GCGC 1 cut(s) 116
AsuHPI GGTGA 1 cut(s) 467
AsuII TTCGAA 1 cut(s) 523
AsuNHI GCTAGC 1 cut(s) 155
BanII GRGCYC 2 cut(s) 223, 315
BbsI GAAGAC 1 cut(s) 348
Bbv12I GWGCWC 2 cut(s) 223, 394
BbvI GCAGC 1 cut(s) 514
BccI CCATC 1 cut(s) 374
BciVI GTATCC 1 cut(s) 224
BcoDI GTCTC 2 cut(s) 120, 474
BfaI CTAG 2 cut(s) 33, 156
BfmI CTRYAG 1 cut(s) 270
BfrI CTTAAG 1 cut(s) 350
BfuI GTATCC 1 cut(s) 224
BisI GCNGC 2 cut(s) 404, 503
BlsI GCNGC 2 cut(s) 405, 504
BmsI GCATC 1 cut(s) 489
BmtI GCTAGC 1 cut(s) 159
BpiI GAAGAC 1 cut(s) 348
Bpu10I CCTNAGC 1 cut(s) 300
Bpu14I TTCGAA 1 cut(s) 523
BpuEI CTTGAG 1 cut(s) 356
BsaHI GRCGYC 1 cut(s) 186
BsaXI ACNNNNNCTCC 2 cut(s) 117, 147
Bsc4I CCNNNNNNNGG 1 cut(s) 142
BseGI GGATG 1 cut(s) 250
BseLI CCNNNNNNNGG 1 cut(s) 142
BseXI GCAGC 1 cut(s) 514
Bsh1236I CGCG 2 cut(s) 48, 114
BsiHKAI GWGCWC 2 cut(s) 223, 394
BslFI GGGAC 2 cut(s) 119, 158
BslI CCNNNNNNNGG 1 cut(s) 142
BsmAI GTCTC 2 cut(s) 120, 474
BsmBI CGTCTC 1 cut(s) 120
BsmFI GGGAC 2 cut(s) 119, 158
BsmI GAATGC 1 cut(s) 505
Bsp119I TTCGAA 1 cut(s) 523
Bsp1286I GDGCHC 3 cut(s) 223, 315, 394
Bsp143I GATC 3 cut(s) 148, 289, 346
BspACI CCGC 2 cut(s) 112, 404
BspFNI CGCG 2 cut(s) 48, 114
BspHI TCATGA 1 cut(s) 578
BspOI GCTAGC 1 cut(s) 159
BspPI GGATC 1 cut(s) 284
BspQI GCTCTTC 1 cut(s) 60
BspT104I TTCGAA 1 cut(s) 523
BspTI CTTAAG 1 cut(s) 350
BssMI GATC 3 cut(s) 148, 289, 346
BssNI GRCGYC 1 cut(s) 186
Bst6I CTCTTC 1 cut(s) 60
BstACI GRCGYC 1 cut(s) 186
BstAFI CTTAAG 1 cut(s) 350
BstBI TTCGAA 1 cut(s) 523
BstC8I GCNNGC 1 cut(s) 157
BstDEI CTNAG 2 cut(s) 60, 300
BstF5I GGATG 1 cut(s) 250
BstFNI CGCG 2 cut(s) 48, 114
BstHHI GCGC 1 cut(s) 116
BstKTI GATC 3 cut(s) 151, 292, 349
BstMAI GTCTC 2 cut(s) 120, 474
BstMBI GATC 3 cut(s) 148, 289, 346
BstNSI RCATGY 1 cut(s) 475
BstSFI CTRYAG 1 cut(s) 270
BstUI CGCG 2 cut(s) 48, 114
BstV1I GCAGC 1 cut(s) 514
BstV2I GAAGAC 1 cut(s) 348
BsuI GTATCC 1 cut(s) 224
BtsCI GGATG 1 cut(s) 250
Cac8I GCNNGC 1 cut(s) 157
CciI TCATGA 1 cut(s) 578
CfoI GCGC 1 cut(s) 116
CseI GACGC 1 cut(s) 175
Csp6I GTAC 4 cut(s) 22, 225, 475, 534
CviAII CATG 4 cut(s) 121, 452, 472, 579
CviQI GTAC 4 cut(s) 22, 225, 475, 534
DdeI CTNAG 2 cut(s) 60, 300
DpnI GATC 3 cut(s) 150, 291, 348
DpnII GATC 3 cut(s) 148, 289, 346
DraI TTTAAA 1 cut(s) 82
Eam1104I CTCTTC 1 cut(s) 60
EarI CTCTTC 1 cut(s) 60
Ecl136II GAGCTC 1 cut(s) 221
Eco24I GRGCYC 2 cut(s) 223, 315
Eco32I GATATC 1 cut(s) 542
Eco53kI GAGCTC 1 cut(s) 221
EcoICRI GAGCTC 1 cut(s) 221
EcoRV GATATC 1 cut(s) 542
EcoT38I GRGCYC 2 cut(s) 223, 315
Esp3I CGTCTC 1 cut(s) 120
FaeI CATG 4 cut(s) 124, 455, 475, 582
FalI AAGNNNNNCTT 2 cut(s) 333, 365
FaqI GGGAC 2 cut(s) 119, 158
FatI CATG 4 cut(s) 120, 451, 471, 578
FauNDI CATATG 1 cut(s) 234
Fnu4HI GCNGC 2 cut(s) 404, 503
FokI GGATG 1 cut(s) 257
FriOI GRGCYC 2 cut(s) 223, 315
Fsp4HI GCNGC 2 cut(s) 404, 503
FspBI CTAG 2 cut(s) 33, 156
GlaI GCGC 1 cut(s) 115
GluI GCNGC 2 cut(s) 404, 503
HgaI GACGC 1 cut(s) 175
HhaI GCGC 1 cut(s) 116
Hin1I GRCGYC 1 cut(s) 186
Hin1II CATG 4 cut(s) 124, 455, 475, 582
Hin6I GCGC 1 cut(s) 114
HinP1I GCGC 1 cut(s) 114
HinfI GANTC 3 cut(s) 238, 248, 320
HphI GGTGA 1 cut(s) 467
Hpy188I TCNGA 2 cut(s) 218, 546
Hpy188III TCNNGA 5 cut(s) 12, 166, 242, 324, 579
HpyCH4IV ACGT 1 cut(s) 258
HpyCH4V TGCA 3 cut(s) 418, 502, 515
HpyF3I CTNAG 2 cut(s) 60, 300
HpySE526I ACGT 1 cut(s) 258
Hsp92I GRCGYC 1 cut(s) 186
Hsp92II CATG 4 cut(s) 124, 455, 475, 582
HspAI GCGC 1 cut(s) 114
Kzo9I GATC 3 cut(s) 148, 289, 346
LguI GCTCTTC 1 cut(s) 60
LmnI GCTCC 2 cut(s) 114, 397
LpnPI CCDG 8 cut(s) 10, 99, 150, 179, 227, 282, 309, 469
Lsp1109I GCAGC 1 cut(s) 514
LweI GCATC 1 cut(s) 489
MaeI CTAG 2 cut(s) 33, 156
MaeII ACGT 1 cut(s) 258
MalI GATC 3 cut(s) 150, 291, 348
MboI GATC 3 cut(s) 148, 289, 346
MboII GAAGA 4 cut(s) 27, 47, 76, 353
MhlI GDGCHC 3 cut(s) 223, 315, 394
MluCI AATT 1 cut(s) 202
MnlI CCTC 5 cut(s) 111, 263, 273, 331, 460
MseI TTAA 2 cut(s) 81, 351
MslI CAYNNNNRTG 1 cut(s) 456
MspCI CTTAAG 1 cut(s) 350
Mva1269I GAATGC 1 cut(s) 505
MvnI CGCG 2 cut(s) 48, 114
NdeI CATATG 1 cut(s) 234
NdeII GATC 3 cut(s) 148, 289, 346
NheI GCTAGC 1 cut(s) 155
NlaIII CATG 4 cut(s) 124, 455, 475, 582
NspI RCATGY 1 cut(s) 475
NspV TTCGAA 1 cut(s) 523
PagI TCATGA 1 cut(s) 578
PciSI GCTCTTC 1 cut(s) 60
PctI GAATGC 1 cut(s) 505
PfeI GAWTC 3 cut(s) 238, 248, 320
PflFI GACNNNGTC 1 cut(s) 131
PkrI GCNGC 2 cut(s) 405, 504
Psp124BI GAGCTC 1 cut(s) 223
Psp1406I AACGTT 1 cut(s) 258
PsyI GACNNNGTC 1 cut(s) 131
RsaI GTAC 4 cut(s) 23, 226, 476, 535
RsaNI GTAC 4 cut(s) 22, 225, 475, 534
RseI CAYNNNNRTG 1 cut(s) 456
SacI GAGCTC 1 cut(s) 223
SapI GCTCTTC 1 cut(s) 60
SaqAI TTAA 2 cut(s) 81, 351
SatI GCNGC 2 cut(s) 404, 503
Sau3AI GATC 3 cut(s) 148, 289, 346
SduI GDGCHC 3 cut(s) 223, 315, 394
SetI ASST 9 cut(s) 11, 91, 111, 157, 223, 261, 271, 492, 531
SfaNI GCATC 1 cut(s) 489
SfcI CTRYAG 1 cut(s) 270
SfuI TTCGAA 1 cut(s) 523
SmiMI CAYNNNNRTG 1 cut(s) 456
SmlI CTYRAG 2 cut(s) 335, 350
SmoI CTYRAG 2 cut(s) 335, 350
Sse9I AATT 1 cut(s) 202
SsiI CCGC 2 cut(s) 112, 404
SspMI CTAG 2 cut(s) 33, 156
SstI GAGCTC 1 cut(s) 223
TaiI ACGT 1 cut(s) 261
TaqI TCGA 4 cut(s) 11, 309, 497, 523
TasI AATT 1 cut(s) 202
TatI WGTACW 1 cut(s) 21
TauI GCSGC 1 cut(s) 406
TfiI GAWTC 3 cut(s) 238, 248, 320
Tru1I TTAA 2 cut(s) 81, 351
Tru9I TTAA 2 cut(s) 81, 351
TseI GCWGC 1 cut(s) 502
TspDTI ATGAA 1 cut(s) 567
Tth111I GACNNNGTC 1 cut(s) 131
Vha464I CTTAAG 1 cut(s) 350
XceI RCATGY 1 cut(s) 475
XspI CTAG 2 cut(s) 33, 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.