Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0009327

Physical Location & Seq

Genomic Coordinates Reverse (-)

29571404 .. 29573007

Gene Structure 1604 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g27260.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGGAAGGTCAAGAAGAAAGTACAAGCAGTCGCGGACAAAGGTGCGCGTGGGGCTGCCGAAGAGGAAGCCCAACGTATTCAAGCCTGCCTTCTGCCACCCTCCGAAGCTCCGCGCCATGCTGGAGCAGCAAGGCCCGGCCTCAGCCCCCCGATGGGACGCCGAGGGCTCCGTCATCCAAAACTACAAGTCCTTCGGCTTCGTCTCCAACCCTAACTTGCTCAGCCTCCGGTCTCGCAATTCTCACATGGTCGAGAGCGATTCCCTCCAGGTCCCCCCTCCGCCCTCCGATGACCCTGACGCCTCCGCAGAGCTCGATTTCGCCGACGGCAGCGATCTCGAAGAGGACGATTTGAAAACTAGTCTAGGGAAGAAACGTAGAGATGGAAAATCTGCACCACTACAACCATTAACGGCCATGCAGCGTCTTCATCTTGGTCGGCTCATTGAGGAGTATGGTGATGACTATCAGAGAATGTTCATGGATACGAAACTAAATGCAATGCAGCATTCTGTCGCAACTTTGGAGAAATTATGCAGACGGTATCATGTGCATAAAGATAGAAATCCCTTGATATTGACCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nop16

Protein Analysis

196

Amino Acids

22.23

Weight (kDa)

9.66

Isoelectric Point (pI)

59.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02870
fragaria_vesca	FvH4_2g25580
malus_domestica	MD03G1286500.v1.1 MD05G1198200.v1.1 MD11G1313700.v1.1
prunus_persica	Prupe.8G259900_v2.0.a1
pyrus_communis	pycom03g22710 pycom11g27260
rosa_chinensis	RchiOBHm_Chr2g0134071 RchiOBHm_Chr6g0293791
rosa_laevigata	RLG00000011923
rosa_multiflora	Rmu_sc0001782.1_g000027
rosa_roxburghii	Rroxscaffold_7G00173900
rosa_rugosa	Rorug06G0238100
rosa_samantha	Rh2BG373700 Rh2DG390300 Rh5BG142100 Rh6AG351400 Rh6BG358300 Rh6CG365400 Rh6DG352100
rosa_wichuraiana	Rw6G030570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	34, 48, 114
AciI	CCGC	4 cut(s)	34, 112, 281, 306
AcoI	YGGCCR	1 cut(s)	414
AcyI	GRCGYC	2 cut(s)	159, 300
AfaI	GTAC	1 cut(s)	23
AfiI	CCNNNNNNNGG	2 cut(s)	153, 154
AgsI	TTSAA	2 cut(s)	82, 355
AhlI	ACTAGT	1 cut(s)	359
AjnI	CCWGG	1 cut(s)	267
AluBI	AGCT	2 cut(s)	109, 313
AluI	AGCT	2 cut(s)	109, 313
Alw21I	GWGCWC	1 cut(s)	315
Alw26I	GTCTC	2 cut(s)	208, 237
AoxI	GGCC	3 cut(s)	133, 138, 414
ApeKI	GCWGC	5 cut(s)	55, 127, 330, 421, 505
AspLEI	GCGC	2 cut(s)	48, 116
AspS9I	GGNCC	2 cut(s)	134, 271
AsuC2I	CCSGG	1 cut(s)	137
AsuHPI	GGTGA	1 cut(s)	470
AvaII	GGWCC	1 cut(s)	271
BanII	GRGCYC	2 cut(s)	170, 315
BbsI	GAAGAC	1 cut(s)	419
Bbv12I	GWGCWC	1 cut(s)	315
BbvCI	CCTCAGC	1 cut(s)	142
BbvI	GCAGC	5 cut(s)	42, 139, 342, 433, 517
BccI	CCATC	2 cut(s)	147, 377
BceAI	ACGGC	2 cut(s)	343, 429
BcgI	CGANNNNNNTGC	2 cut(s)	319, 353
BciT130I	CCWGG	1 cut(s)	269
BciVI	GTATCC	1 cut(s)	478
BcnI	CCSGG	1 cut(s)	137
BcoDI	GTCTC	2 cut(s)	208, 237
BcuI	ACTAGT	1 cut(s)	359
BfaI	CTAG	2 cut(s)	360, 365
BfuI	GTATCC	1 cut(s)	478
BisI	GCNGC	5 cut(s)	56, 128, 331, 422, 506
BlpI	GCTNAGC	1 cut(s)	221
BlsI	GCNGC	5 cut(s)	57, 129, 332, 423, 507
Bme1390I	CCNGG	2 cut(s)	137, 269
Bme18I	GGWCC	1 cut(s)	271
BmgT120I	GGNCC	2 cut(s)	134, 271
BmiI	GGNNCC	2 cut(s)	169, 273
BmrFI	CCNGG	2 cut(s)	137, 269
BpiI	GAAGAC	1 cut(s)	419
BpmI	CTGGAG	2 cut(s)	143, 251
Bpu10I	CCTNAGC	1 cut(s)	142
Bpu1102I	GCTNAGC	1 cut(s)	221
BpuMI	CCSGG	1 cut(s)	137
BsaBI	GATNNNNATC	2 cut(s)	465, 564
BsaHI	GRCGYC	2 cut(s)	159, 300
BsaI	GGTCTC	1 cut(s)	237
BsaJI	CCNNGG	1 cut(s)	162
BsaWI	WCCGGW	1 cut(s)	228
Bsc4I	CCNNNNNNNGG	2 cut(s)	153, 154
Bse3DI	GCAATG	1 cut(s)	507
Bse8I	GATNNNNATC	2 cut(s)	465, 564
BseBI	CCWGG	1 cut(s)	269
BseDI	CCNNGG	1 cut(s)	162
BseGI	GGATG	1 cut(s)	174
BseJI	GATNNNNATC	2 cut(s)	465, 564
BseLI	CCNNNNNNNGG	2 cut(s)	153, 154
BseMI	GCAATG	1 cut(s)	507
BseMII	CTCAG	2 cut(s)	156, 235
BseRI	GAGGAG	1 cut(s)	464
BseXI	GCAGC	5 cut(s)	42, 139, 342, 433, 517
BsgI	GTGCAG	1 cut(s)	378
Bsh1236I	CGCG	3 cut(s)	34, 48, 114
BshFI	GGCC	3 cut(s)	135, 140, 416
BsiHKAI	GWGCWC	1 cut(s)	315
BsiSI	CCGG	2 cut(s)	137, 229
BslFI	GGGAC	2 cut(s)	170, 257
BslI	CCNNNNNNNGG	2 cut(s)	153, 154
BsmAI	GTCTC	2 cut(s)	208, 237
BsmBI	CGTCTC	1 cut(s)	208
BsmFI	GGGAC	2 cut(s)	170, 257
BsmI	GAATGC	1 cut(s)	508
BsnI	GGCC	3 cut(s)	135, 140, 416
Bso31I	GGTCTC	1 cut(s)	237
Bsp1286I	GDGCHC	2 cut(s)	170, 315
Bsp143I	GATC	1 cut(s)	334
Bsp1720I	GCTNAGC	1 cut(s)	221
BspACI	CCGC	4 cut(s)	34, 112, 281, 306
BspANI	GGCC	3 cut(s)	135, 140, 416
BspCNI	CTCAG	2 cut(s)	155, 234
BspFNI	CGCG	3 cut(s)	34, 48, 114
BspLI	GGNNCC	2 cut(s)	169, 273
BspTNI	GGTCTC	1 cut(s)	237
BsrDI	GCAATG	1 cut(s)	507
BssECI	CCNNGG	1 cut(s)	162
BssMI	GATC	1 cut(s)	334
BssNI	GRCGYC	2 cut(s)	159, 300
Bst2UI	CCWGG	1 cut(s)	269
Bst4CI	ACNGT	1 cut(s)	543
Bst6I	CTCTTC	2 cut(s)	56, 336
BstACI	GRCGYC	2 cut(s)	159, 300
BstC8I	GCNNGC	1 cut(s)	87
BstDEI	CTNAG	2 cut(s)	142, 221
BstF5I	GGATG	1 cut(s)	174
BstFNI	CGCG	3 cut(s)	34, 48, 114
BstHHI	GCGC	2 cut(s)	48, 116
BstKTI	GATC	1 cut(s)	337
BstMAI	GTCTC	2 cut(s)	208, 237
BstMBI	GATC	1 cut(s)	334
BstMWI	GCNNNNNNNGC	2 cut(s)	52, 127
BstNI	CCWGG	1 cut(s)	269
BstSCI	CCNGG	2 cut(s)	135, 267
BstUI	CGCG	3 cut(s)	34, 48, 114
BstV1I	GCAGC	5 cut(s)	42, 139, 342, 433, 517
BstV2I	GAAGAC	1 cut(s)	419
BsuI	GTATCC	1 cut(s)	478
BsuRI	GGCC	3 cut(s)	135, 140, 416
BtsCI	GGATG	1 cut(s)	174
Cac8I	GCNNGC	1 cut(s)	87
CfoI	GCGC	2 cut(s)	48, 116
Cfr13I	GGNCC	2 cut(s)	134, 271
CseI	GACGC	3 cut(s)	167, 308, 413
Csp6I	GTAC	1 cut(s)	22
CviAII	CATG	5 cut(s)	118, 247, 418, 481, 548
CviQI	GTAC	1 cut(s)	22
DdeI	CTNAG	2 cut(s)	142, 221
DpnI	GATC	1 cut(s)	336
DpnII	GATC	1 cut(s)	334
EaeI	YGGCCR	1 cut(s)	414
Eam1104I	CTCTTC	2 cut(s)	56, 336
EarI	CTCTTC	2 cut(s)	56, 336
EciI	GGCGGA	1 cut(s)	270
Ecl136II	GAGCTC	1 cut(s)	313
Eco24I	GRGCYC	2 cut(s)	170, 315
Eco31I	GGTCTC	1 cut(s)	237
Eco47I	GGWCC	1 cut(s)	271
Eco53kI	GAGCTC	1 cut(s)	313
EcoICRI	GAGCTC	1 cut(s)	313
EcoO109I	RGGNCCY	1 cut(s)	271
EcoRII	CCWGG	1 cut(s)	267
EcoT38I	GRGCYC	2 cut(s)	170, 315
Esp3I	CGTCTC	1 cut(s)	208
FaeI	CATG	5 cut(s)	121, 250, 421, 484, 551
FaiI	YATR	8 cut(s)	119, 248, 419, 456, 482, 535, 549, 555
FalI	AAGNNNNNCTT	2 cut(s)	74, 106
FaqI	GGGAC	2 cut(s)	170, 257
FatI	CATG	5 cut(s)	117, 246, 417, 480, 547
Fnu4HI	GCNGC	5 cut(s)	56, 128, 331, 422, 506
FokI	GGATG	1 cut(s)	161
FriOI	GRGCYC	2 cut(s)	170, 315
Fsp4HI	GCNGC	5 cut(s)	56, 128, 331, 422, 506
FspBI	CTAG	2 cut(s)	360, 365
GlaI	GCGC	2 cut(s)	47, 115
GluI	GCNGC	5 cut(s)	56, 128, 331, 422, 506
GsuI	CTGGAG	2 cut(s)	143, 251
HaeIII	GGCC	3 cut(s)	135, 140, 416
HapII	CCGG	2 cut(s)	137, 229
HgaI	GACGC	3 cut(s)	167, 308, 413
HhaI	GCGC	2 cut(s)	48, 116
Hin1I	GRCGYC	2 cut(s)	159, 300
Hin1II	CATG	5 cut(s)	121, 250, 421, 484, 551
Hin6I	GCGC	2 cut(s)	46, 114
HinP1I	GCGC	2 cut(s)	46, 114
HinfI	GANTC	1 cut(s)	260
HpaII	CCGG	2 cut(s)	137, 229
HphI	GGTGA	1 cut(s)	470
Hpy188I	TCNGA	3 cut(s)	105, 289, 471
Hpy188III	TCNNGA	3 cut(s)	12, 253, 338
Hpy99I	CGWCG	1 cut(s)	329
HpyAV	CCTTC	2 cut(s)	100, 202
HpyCH4III	ACNGT	1 cut(s)	543
HpyCH4IV	ACGT	2 cut(s)	75, 376
HpyCH4V	TGCA	6 cut(s)	395, 421, 500, 505, 537, 553
HpyF10VI	GCNNNNNNNGC	2 cut(s)	52, 127
HpyF3I	CTNAG	2 cut(s)	142, 221
HpySE526I	ACGT	2 cut(s)	75, 376
Hsp92I	GRCGYC	2 cut(s)	159, 300
Hsp92II	CATG	5 cut(s)	121, 250, 421, 484, 551
HspAI	GCGC	2 cut(s)	46, 114
Kzo9I	GATC	1 cut(s)	334
LmnI	GCTCC	3 cut(s)	114, 124, 173
LpnPI	CCDG	7 cut(s)	99, 107, 150, 242, 254, 281, 309
Lsp1109I	GCAGC	5 cut(s)	42, 139, 342, 433, 517
MaeI	CTAG	2 cut(s)	360, 365
MaeII	ACGT	2 cut(s)	75, 376
MalI	GATC	1 cut(s)	336
MboI	GATC	1 cut(s)	334
MboII	GAAGA	5 cut(s)	27, 73, 353, 382, 419
MhlI	GDGCHC	2 cut(s)	170, 315
MluCI	AATT	2 cut(s)	238, 530
MmeI	TCCRAC	1 cut(s)	231
MseI	TTAA	1 cut(s)	410
MspI	CCGG	2 cut(s)	137, 229
MspR9I	CCNGG	2 cut(s)	137, 269
Mva1269I	GAATGC	1 cut(s)	508
MvaI	CCWGG	1 cut(s)	269
MvnI	CGCG	3 cut(s)	34, 48, 114
MwoI	GCNNNNNNNGC	2 cut(s)	52, 127
NciI	CCSGG	1 cut(s)	137
NdeII	GATC	1 cut(s)	334
NlaIII	CATG	5 cut(s)	121, 250, 421, 484, 551
NlaIV	GGNNCC	2 cut(s)	169, 273
NmeAIII	GCCGAG	1 cut(s)	187
PcsI	WCGNNNNNNNCGW	2 cut(s)	321, 345
PctI	GAATGC	1 cut(s)	508
PfeI	GAWTC	1 cut(s)	260
PkrI	GCNGC	5 cut(s)	57, 129, 332, 423, 507
PpuMI	RGGWCCY	1 cut(s)	271
Psp124BI	GAGCTC	1 cut(s)	315
Psp5II	RGGWCCY	1 cut(s)	271
Psp6I	CCWGG	1 cut(s)	267
PspGI	CCWGG	1 cut(s)	267
PspN4I	GGNNCC	2 cut(s)	169, 273
PspPI	GGNCC	2 cut(s)	134, 271
PspPPI	RGGWCCY	1 cut(s)	271
RsaI	GTAC	1 cut(s)	23
RsaNI	GTAC	1 cut(s)	22
SacI	GAGCTC	1 cut(s)	315
SaqAI	TTAA	1 cut(s)	410
SatI	GCNGC	5 cut(s)	56, 128, 331, 422, 506
Sau3AI	GATC	1 cut(s)	334
Sau96I	GGNCC	2 cut(s)	134, 271
ScrFI	CCNGG	2 cut(s)	137, 269
SduI	GDGCHC	2 cut(s)	170, 315
SetI	ASST	7 cut(s)	11, 45, 78, 111, 273, 315, 379
SinI	GGWCC	1 cut(s)	271
SpeI	ACTAGT	1 cut(s)	359
Sse9I	AATT	2 cut(s)	238, 530
SsiI	CCGC	4 cut(s)	34, 112, 281, 306
SspMI	CTAG	2 cut(s)	360, 365
SstI	GAGCTC	1 cut(s)	315
StyD4I	CCNGG	2 cut(s)	135, 267
TaaI	ACNGT	1 cut(s)	543
TaiI	ACGT	2 cut(s)	78, 379
TaqI	TCGA	3 cut(s)	252, 315, 339
TasI	AATT	2 cut(s)	238, 530
TatI	WGTACW	1 cut(s)	21
TfiI	GAWTC	1 cut(s)	260
Tru1I	TTAA	1 cut(s)	410
Tru9I	TTAA	1 cut(s)	410
TseI	GCWGC	5 cut(s)	55, 127, 330, 421, 505
TspDTI	ATGAA	2 cut(s)	419, 469
TspGWI	ACGGA	1 cut(s)	160
VpaK11BI	GGWCC	1 cut(s)	271
XspI	CTAG	2 cut(s)	360, 365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.