Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0009327

Physical Location & Seq

Genomic Coordinates Reverse (-)

14741646 .. 14743874

Gene Structure 2229 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG142100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGTTGTCGGGCAGAGTCGTCCAAAACTACAAGTCGTTCGGCGTCCTATCCAACCCTAACTTGCTCAACGTCCGCTCTCACATCGTCGAAAGCGACTCTCTCCAGGCCCCTCCCGATCAGGCTGAGGCCGCCGAGCTTGACCCCAACGACGACGGTAGCGATCTCGAAGAAGACGACATTACAGAGTTCTCAGAGGAATTGAAGATATGGCAGATAATAATGGGATGGTTGTACCAACGGAAATGGAGACTAATGGGATGGCTGTACATGCGGAAATGGAAACTCAACCTATTCAAGCTATTCAACCTTCATTTTTTCCATGTACATGTTGTGGTCAGGATGATTAGCTGCTGGTCTGCACGATCAAGCAGAGTTTTCTTTTCAGTAGTTACTTTGGAGATACAGAGGAGACATGCTGACATTTACTTTTTGGATGTTATTTTGGAGATGCAGAGAAGATTTGCTAGTGTTTGCTTTTTGGTTCTCAGAATTGATGTTGAAGCTGGATCTGGAATAGTAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nop16

Protein Analysis

174

Amino Acids

20.45

Weight (kDa)

5.74

Isoelectric Point (pI)

45.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02870
fragaria_vesca	FvH4_2g25580
malus_domestica	MD03G1286500.v1.1 MD05G1198200.v1.1 MD11G1313700.v1.1
prunus_persica	Prupe.8G259900_v2.0.a1
pyrus_communis	pycom03g22710 pycom11g27260
rosa_chinensis	RchiOBHm_Chr2g0134071 RchiOBHm_Chr6g0293791
rosa_laevigata	RLG00000011923
rosa_multiflora	Rmu_sc0001782.1_g000027
rosa_roxburghii	Rroxscaffold_7G00173900
rosa_rugosa	Rorug06G0238100
rosa_samantha	Rh2BG373700 Rh2DG390300 Rh5BG142100 Rh6AG351400 Rh6BG358300 Rh6CG365400 Rh6DG352100
rosa_wichuraiana	Rw6G030570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	75
AciI	CCGC	3 cut(s)	73, 129, 271
AclWI	GGATC	1 cut(s)	514
AcyI	GRCGYC	1 cut(s)	42
AfaI	GTAC	3 cut(s)	233, 266, 324
AflIII	ACRYGT	1 cut(s)	325
AgsI	TTSAA	4 cut(s)	202, 295, 304, 500
AjnI	CCWGG	1 cut(s)	102
AluBI	AGCT	4 cut(s)	136, 298, 348, 503
AluI	AGCT	4 cut(s)	136, 298, 348, 503
Alw26I	GTCTC	2 cut(s)	241, 403
AlwI	GGATC	1 cut(s)	514
AoxI	GGCC	2 cut(s)	105, 126
ApeKI	GCWGC	1 cut(s)	348
AspS9I	GGNCC	1 cut(s)	106
BbsI	GAAGAC	1 cut(s)	177
BbvCI	CCTCAGC	1 cut(s)	123
BbvI	GCAGC	1 cut(s)	335
BccI	CCATC	2 cut(s)	219, 252
BciT130I	CCWGG	1 cut(s)	104
BcoDI	GTCTC	2 cut(s)	241, 403
BfaI	CTAG	1 cut(s)	465
BisI	GCNGC	2 cut(s)	129, 349
BlsI	GCNGC	2 cut(s)	130, 350
Bme1390I	CCNGG	1 cut(s)	104
BmgT120I	GGNCC	1 cut(s)	106
BmiI	GGNNCC	1 cut(s)	108
BmrFI	CCNGG	1 cut(s)	104
BmsI	GCATC	1 cut(s)	438
BpiI	GAAGAC	1 cut(s)	177
BpmI	CTGGAG	1 cut(s)	86
Bpu10I	CCTNAGC	1 cut(s)	123
BsaHI	GRCGYC	1 cut(s)	42
BseBI	CCWGG	1 cut(s)	104
BseGI	GGATG	4 cut(s)	230, 263, 345, 439
BseMII	CTCAG	3 cut(s)	114, 204, 499
BseRI	GAGGAG	1 cut(s)	421
BseXI	GCAGC	1 cut(s)	335
BsgI	GTGCAG	1 cut(s)	342
BshFI	GGCC	2 cut(s)	107, 128
BsmAI	GTCTC	2 cut(s)	241, 403
BsnI	GGCC	2 cut(s)	107, 128
Bsp1407I	TGTACA	2 cut(s)	264, 322
Bsp143I	GATC	4 cut(s)	115, 160, 362, 506
BspACI	CCGC	3 cut(s)	73, 129, 271
BspANI	GGCC	2 cut(s)	107, 128
BspCNI	CTCAG	3 cut(s)	115, 203, 498
BspLI	GGNNCC	1 cut(s)	108
BspPI	GGATC	1 cut(s)	514
BsrBI	CCGCTC	1 cut(s)	75
BsrGI	TGTACA	2 cut(s)	264, 322
BssMI	GATC	4 cut(s)	115, 160, 362, 506
BssNI	GRCGYC	1 cut(s)	42
Bst2UI	CCWGG	1 cut(s)	104
Bst4CI	ACNGT	1 cut(s)	155
BstACI	GRCGYC	1 cut(s)	42
BstAUI	TGTACA	2 cut(s)	264, 322
BstDEI	CTNAG	3 cut(s)	123, 190, 485
BstF5I	GGATG	4 cut(s)	230, 263, 345, 439
BstKTI	GATC	4 cut(s)	118, 163, 365, 509
BstMAI	GTCTC	2 cut(s)	241, 403
BstMBI	GATC	4 cut(s)	115, 160, 362, 506
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 268
BstNI	CCWGG	1 cut(s)	104
BstNSI	RCATGY	3 cut(s)	271, 329, 416
BstSCI	CCNGG	1 cut(s)	102
BstV1I	GCAGC	1 cut(s)	335
BstV2I	GAAGAC	1 cut(s)	177
BstX2I	RGATCY	1 cut(s)	506
BstYI	RGATCY	1 cut(s)	506
BsuRI	GGCC	2 cut(s)	107, 128
BtsCI	GGATG	4 cut(s)	230, 263, 345, 439
Cfr13I	GGNCC	1 cut(s)	106
CseI	GACGC	1 cut(s)	31
Csp6I	GTAC	3 cut(s)	232, 265, 323
CviAII	CATG	4 cut(s)	268, 320, 326, 413
CviJI	RGCY	8 cut(s)	107, 122, 128, 136, 262, 298, 348, 503
CviKI_1	RGCY	8 cut(s)	107, 122, 128, 136, 262, 298, 348, 503
CviQI	GTAC	3 cut(s)	232, 265, 323
DdeI	CTNAG	3 cut(s)	123, 190, 485
DpnI	GATC	4 cut(s)	117, 162, 364, 508
DpnII	GATC	4 cut(s)	115, 160, 362, 506
EcoO109I	RGGNCCY	1 cut(s)	106
EcoRII	CCWGG	1 cut(s)	102
FaeI	CATG	4 cut(s)	271, 323, 329, 416
FaiI	YATR	5 cut(s)	208, 269, 321, 327, 414
FatI	CATG	4 cut(s)	267, 319, 325, 412
Fnu4HI	GCNGC	2 cut(s)	129, 349
FokI	GGATG	4 cut(s)	237, 270, 352, 446
Fsp4HI	GCNGC	2 cut(s)	129, 349
FspBI	CTAG	1 cut(s)	465
GluI	GCNGC	2 cut(s)	129, 349
GsuI	CTGGAG	1 cut(s)	86
HaeIII	GGCC	2 cut(s)	107, 128
HgaI	GACGC	1 cut(s)	31
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	4 cut(s)	271, 323, 329, 416
HinfI	GANTC	2 cut(s)	15, 95
Hpy188I	TCNGA	2 cut(s)	193, 488
Hpy188III	TCNNGA	4 cut(s)	113, 164, 337, 510
Hpy99I	CGWCG	3 cut(s)	89, 152, 155
HpyAV	CCTTC	1 cut(s)	317
HpyCH4III	ACNGT	1 cut(s)	155
HpyCH4IV	ACGT	1 cut(s)	69
HpyCH4V	TGCA	2 cut(s)	359, 451
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 268
HpyF3I	CTNAG	3 cut(s)	123, 190, 485
HpySE526I	ACGT	1 cut(s)	69
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	4 cut(s)	271, 323, 329, 416
Kzo9I	GATC	4 cut(s)	115, 160, 362, 506
LpnPI	CCDG	7 cut(s)	89, 104, 116, 322, 337, 489, 495
Lsp1109I	GCAGC	1 cut(s)	335
LweI	GCATC	1 cut(s)	438
MaeI	CTAG	1 cut(s)	465
MaeII	ACGT	1 cut(s)	69
MaeIII	GTNAC	1 cut(s)	388
MalI	GATC	4 cut(s)	117, 162, 364, 508
MbiI	CCGCTC	1 cut(s)	75
MboI	GATC	4 cut(s)	115, 160, 362, 506
MboII	GAAGA	4 cut(s)	179, 182, 214, 468
MflI	RGATCY	1 cut(s)	506
MluCI	AATT	2 cut(s)	197, 489
MlyI	GAGTC	2 cut(s)	24, 89
MmeI	TCCRAC	1 cut(s)	75
MnlI	CCTC	4 cut(s)	118, 120, 187, 399
MslI	CAYNNNNRTG	1 cut(s)	324
MspR9I	CCNGG	1 cut(s)	104
MvaI	CCWGG	1 cut(s)	104
MwoI	GCNNNNNNNGC	2 cut(s)	128, 268
NdeII	GATC	4 cut(s)	115, 160, 362, 506
NlaIII	CATG	4 cut(s)	271, 323, 329, 416
NlaIV	GGNNCC	1 cut(s)	108
NmeAIII	GCCGAG	1 cut(s)	157
NspI	RCATGY	3 cut(s)	271, 329, 416
PciI	ACATGT	1 cut(s)	325
PcsI	WCGNNNNNNNCGW	3 cut(s)	90, 156, 171
PkrI	GCNGC	2 cut(s)	130, 350
PleI	GAGTC	2 cut(s)	23, 89
PpsI	GAGTC	2 cut(s)	23, 89
PscI	ACATGT	1 cut(s)	325
Psp6I	CCWGG	1 cut(s)	102
PspGI	CCWGG	1 cut(s)	102
PspN4I	GGNNCC	1 cut(s)	108
PspPI	GGNCC	1 cut(s)	106
PsuI	RGATCY	1 cut(s)	506
RsaI	GTAC	3 cut(s)	233, 266, 324
RsaNI	GTAC	3 cut(s)	232, 265, 323
RseI	CAYNNNNRTG	1 cut(s)	324
SatI	GCNGC	2 cut(s)	129, 349
Sau3AI	GATC	4 cut(s)	115, 160, 362, 506
Sau96I	GGNCC	1 cut(s)	106
SchI	GAGTC	2 cut(s)	24, 89
ScrFI	CCNGG	1 cut(s)	104
SetI	ASST	7 cut(s)	72, 138, 291, 300, 309, 350, 505
SfaNI	GCATC	1 cut(s)	438
SmiMI	CAYNNNNRTG	1 cut(s)	324
Sse9I	AATT	2 cut(s)	197, 489
SsiI	CCGC	3 cut(s)	73, 129, 271
SspMI	CTAG	1 cut(s)	465
StyD4I	CCNGG	1 cut(s)	102
TaaI	ACNGT	1 cut(s)	155
TaiI	ACGT	1 cut(s)	72
TaqI	TCGA	2 cut(s)	87, 165
TasI	AATT	2 cut(s)	197, 489
TatI	WGTACW	2 cut(s)	264, 322
TauI	GCSGC	1 cut(s)	131
TseI	GCWGC	1 cut(s)	348
TspDTI	ATGAA	1 cut(s)	299
TspGWI	ACGGA	1 cut(s)	253
XceI	RCATGY	3 cut(s)	271, 329, 416
XspI	CTAG	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.