RchiOBHm_Chr2g0134071

Nucleolar protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
51059377 .. 51061135
1759 bp
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UTR
Exon/CDS
Intron
PRQ50515

Sequence Viewer

Length: 180 bp
ATGTTGTCGGGCAGCGTCATCCAAAACTACAAGTCGTTCGGCGTCCTCTCCAACCCTAAAGTGCTTAACGTCCGCTCTCACATCGTCGAAAGCGACTCTCTCCTGGCCCCTCCCGATCAGGCTGAGGCCGCCGAGCTCGACCCCAACGACGACGGTAGCGATCTCGAAGAAGACGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

59

Amino Acids

6.28

Weight (kDa)

4.05

Isoelectric Point (pI)

41.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 75
AciI CCGC 2 cut(s) 73, 129
AcyI GRCGYC 1 cut(s) 42
AjnI CCWGG 1 cut(s) 102
AluBI AGCT 1 cut(s) 136
AluI AGCT 1 cut(s) 136
Alw21I GWGCWC 1 cut(s) 138
AoxI GGCC 2 cut(s) 105, 126
ApeKI GCWGC 1 cut(s) 12
AspS9I GGNCC 1 cut(s) 106
BanII GRGCYC 1 cut(s) 138
Bbv12I GWGCWC 1 cut(s) 138
BbvCI CCTCAGC 1 cut(s) 123
BbvI GCAGC 1 cut(s) 24
BciT130I CCWGG 1 cut(s) 104
BisI GCNGC 2 cut(s) 13, 129
BlsI GCNGC 2 cut(s) 14, 130
Bme1390I CCNGG 1 cut(s) 104
BmgT120I GGNCC 1 cut(s) 106
BmiI GGNNCC 1 cut(s) 108
BmrFI CCNGG 1 cut(s) 104
Bpu10I CCTNAGC 1 cut(s) 123
BsaHI GRCGYC 1 cut(s) 42
BseBI CCWGG 1 cut(s) 104
BseGI GGATG 1 cut(s) 18
BseMII CTCAG 1 cut(s) 114
BseXI GCAGC 1 cut(s) 24
BshFI GGCC 2 cut(s) 107, 128
BsiHKAI GWGCWC 1 cut(s) 138
BsnI GGCC 2 cut(s) 107, 128
Bsp1286I GDGCHC 1 cut(s) 138
Bsp143I GATC 2 cut(s) 115, 160
BspACI CCGC 2 cut(s) 73, 129
BspANI GGCC 2 cut(s) 107, 128
BspCNI CTCAG 1 cut(s) 115
BspLI GGNNCC 1 cut(s) 108
BsrBI CCGCTC 1 cut(s) 75
BssMI GATC 2 cut(s) 115, 160
BssNI GRCGYC 1 cut(s) 42
Bst2UI CCWGG 1 cut(s) 104
Bst4CI ACNGT 2 cut(s) 155, 176
BstACI GRCGYC 1 cut(s) 42
BstDEI CTNAG 1 cut(s) 123
BstF5I GGATG 1 cut(s) 18
BstKTI GATC 2 cut(s) 118, 163
BstMBI GATC 2 cut(s) 115, 160
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstNI CCWGG 1 cut(s) 104
BstSCI CCNGG 1 cut(s) 102
BstV1I GCAGC 1 cut(s) 24
BsuRI GGCC 2 cut(s) 107, 128
BtsCI GGATG 1 cut(s) 18
Cfr13I GGNCC 1 cut(s) 106
CseI GACGC 2 cut(s) 4, 31
CviJI RGCY 4 cut(s) 107, 122, 128, 136
CviKI_1 RGCY 4 cut(s) 107, 122, 128, 136
DdeI CTNAG 1 cut(s) 123
DpnI GATC 2 cut(s) 117, 162
DpnII GATC 2 cut(s) 115, 160
Ecl136II GAGCTC 1 cut(s) 136
Eco24I GRGCYC 1 cut(s) 138
Eco53kI GAGCTC 1 cut(s) 136
EcoICRI GAGCTC 1 cut(s) 136
EcoRII CCWGG 1 cut(s) 102
EcoT38I GRGCYC 1 cut(s) 138
Fnu4HI GCNGC 2 cut(s) 13, 129
FokI GGATG 1 cut(s) 5
FriOI GRGCYC 1 cut(s) 138
Fsp4HI GCNGC 2 cut(s) 13, 129
GluI GCNGC 2 cut(s) 13, 129
HaeIII GGCC 2 cut(s) 107, 128
HgaI GACGC 2 cut(s) 4, 31
Hin1I GRCGYC 1 cut(s) 42
HinfI GANTC 1 cut(s) 95
Hpy188III TCNNGA 2 cut(s) 113, 164
Hpy99I CGWCG 3 cut(s) 89, 152, 155
HpyCH4III ACNGT 2 cut(s) 155, 176
HpyCH4IV ACGT 1 cut(s) 69
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
HpyF3I CTNAG 1 cut(s) 123
HpySE526I ACGT 1 cut(s) 69
Hsp92I GRCGYC 1 cut(s) 42
Kzo9I GATC 2 cut(s) 115, 160
LpnPI CCDG 3 cut(s) 89, 104, 116
Lsp1109I GCAGC 1 cut(s) 24
MaeII ACGT 1 cut(s) 69
MalI GATC 2 cut(s) 117, 162
MbiI CCGCTC 1 cut(s) 75
MboI GATC 2 cut(s) 115, 160
MboII GAAGA 1 cut(s) 179
MhlI GDGCHC 1 cut(s) 138
MlyI GAGTC 1 cut(s) 89
MmeI TCCRAC 1 cut(s) 75
MnlI CCTC 3 cut(s) 56, 118, 120
MseI TTAA 1 cut(s) 66
MspR9I CCNGG 1 cut(s) 104
MvaI CCWGG 1 cut(s) 104
MwoI GCNNNNNNNGC 1 cut(s) 128
NdeII GATC 2 cut(s) 115, 160
NlaIV GGNNCC 1 cut(s) 108
NmeAIII GCCGAG 1 cut(s) 157
PcsI WCGNNNNNNNCGW 3 cut(s) 90, 144, 156
PkrI GCNGC 2 cut(s) 14, 130
PleI GAGTC 1 cut(s) 89
PpsI GAGTC 1 cut(s) 89
Psp124BI GAGCTC 1 cut(s) 138
Psp6I CCWGG 1 cut(s) 102
PspGI CCWGG 1 cut(s) 102
PspN4I GGNNCC 1 cut(s) 108
PspPI GGNCC 1 cut(s) 106
SacI GAGCTC 1 cut(s) 138
SaqAI TTAA 1 cut(s) 66
SatI GCNGC 2 cut(s) 13, 129
Sau3AI GATC 2 cut(s) 115, 160
Sau96I GGNCC 1 cut(s) 106
SchI GAGTC 1 cut(s) 89
ScrFI CCNGG 1 cut(s) 104
SduI GDGCHC 1 cut(s) 138
SetI ASST 2 cut(s) 72, 138
SgeI CNNG 9 cut(s) 21, 43, 115, 116, 125, 131, 145, 149, 176
SsiI CCGC 2 cut(s) 73, 129
SstI GAGCTC 1 cut(s) 138
StyD4I CCNGG 1 cut(s) 102
TaaI ACNGT 2 cut(s) 155, 176
TaiI ACGT 1 cut(s) 72
TaqI TCGA 3 cut(s) 87, 138, 165
TauI GCSGC 1 cut(s) 131
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TseI GCWGC 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.