Rh6AG351400

Ribosome biogenesis protein Nop16

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0009327
Physical Location & Seq
Forward (+)
55035161 .. 55037361
2201 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG351400.1

Sequence Viewer

Length: 579 bp
ATGGGAGGGTCAAGAAGAAAGTACAAGCGGTCTCGTACCAAGGTCCGGGTGGCGCTGCCGAAGCGGAAGCCCAACGTGTTCAAGCCGGCGTTCTGCCTCCCTCCCAAGCTCCGCGCTTTGATCGACCAAGCAGAACCCGCTTCTCGCCCTAAGTGGGACCCCGAGGCCAGCGTCATCCAAAACTACAAGTCGTTCGGCGTCCTCTCCAACCCTAACTTGCTCAACGTCCGCTCTCGCACCTCTCACATCGTCGAAAGCGACTCTCTCCGGGCCCCTCCCGATCAGGCTGAGGCCGCCGAGCTCGACCCCAACGACGACGGTAGCGATCTCGAAGAAGACGATTTGAAAACTACTCTAGGAAAGAAACGGAGAGATGGGAGACCTGCTTCGTTACTACCGTTAACCACCATCCAACGTGTTCATGTCAGTCGGCTTATTGAGAAATATGGAGATGACTATCAGAGGATGTTCATGGATACAAAACTAAATGCAATGCAGCATTCTGTTGCAACTTTGGAGAAGTTATGCAGAAGGTATCACATGTATAAAGATAAAAATCCCCTGATATTGACGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nop16

Protein Analysis

192

Amino Acids

22.01

Weight (kDa)

9.89

Isoelectric Point (pI)

54.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nop16 PF09420 110 - 180 2.4e-15 Ribosome biogenesis protein Nop16
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 391
AccBSI CCGCTC 1 cut(s) 231
AccII CGCG 2 cut(s) 114, 574
AciI CCGC 6 cut(s) 28, 64, 112, 138, 229, 294
AcyI GRCGYC 1 cut(s) 198
AfaI GTAC 2 cut(s) 23, 37
AfiI CCNNNNNNNGG 2 cut(s) 45, 154
AflIII ACRYGT 4 cut(s) 75, 415, 540, 572
AgsI TTSAA 2 cut(s) 82, 346
AluBI AGCT 2 cut(s) 109, 301
AluI AGCT 2 cut(s) 109, 301
Alw21I GWGCWC 1 cut(s) 303
Alw26I GTCTC 2 cut(s) 36, 373
Ama87I CYCGRG 1 cut(s) 161
AoxI GGCC 3 cut(s) 165, 270, 291
ApaI GGGCCC 1 cut(s) 274
ApeKI GCWGC 2 cut(s) 55, 496
AspLEI GCGC 2 cut(s) 55, 116
AspS9I GGNCC 4 cut(s) 43, 157, 270, 271
AsuC2I CCSGG 2 cut(s) 47, 269
AvaI CYCGRG 1 cut(s) 161
AvaII GGWCC 2 cut(s) 43, 157
BaeGI GKGCMC 1 cut(s) 274
BanII GRGCYC 2 cut(s) 274, 303
BbsI GAAGAC 1 cut(s) 342
Bbv12I GWGCWC 1 cut(s) 303
BbvCI CCTCAGC 1 cut(s) 288
BbvI GCAGC 2 cut(s) 42, 508
BccI CCATC 2 cut(s) 368, 416
BciVI GTATCC 1 cut(s) 469
BcnI CCSGG 2 cut(s) 47, 269
BcoDI GTCTC 2 cut(s) 36, 373
BfaI CTAG 1 cut(s) 356
BfoI RGCGCY 1 cut(s) 56
BfuAI ACCTGC 1 cut(s) 391
BfuI GTATCC 1 cut(s) 469
BisI GCNGC 3 cut(s) 56, 294, 497
BlsI GCNGC 3 cut(s) 57, 295, 498
Bme1390I CCNGG 2 cut(s) 47, 269
Bme18I GGWCC 2 cut(s) 43, 157
BmeT110I CYCGRG 1 cut(s) 161
BmgT120I GGNCC 4 cut(s) 43, 157, 270, 271
BmiI GGNNCC 4 cut(s) 158, 159, 272, 273
BmrFI CCNGG 2 cut(s) 47, 269
BpiI GAAGAC 1 cut(s) 342
Bpu10I CCTNAGC 1 cut(s) 288
BpuMI CCSGG 2 cut(s) 47, 269
BsaBI GATNNNNATC 2 cut(s) 456, 555
BsaHI GRCGYC 1 cut(s) 198
BsaI GGTCTC 2 cut(s) 36, 373
BsaJI CCNNGG 2 cut(s) 39, 162
Bsc4I CCNNNNNNNGG 2 cut(s) 45, 154
Bse118I RCCGGY 1 cut(s) 85
Bse3DI GCAATG 1 cut(s) 498
Bse8I GATNNNNATC 2 cut(s) 456, 555
BseDI CCNNGG 2 cut(s) 39, 162
BseGI GGATG 3 cut(s) 174, 408, 471
BseJI GATNNNNATC 2 cut(s) 456, 555
BseLI CCNNNNNNNGG 2 cut(s) 45, 154
BseMI GCAATG 1 cut(s) 498
BseMII CTCAG 1 cut(s) 279
BseSI GKGCMC 1 cut(s) 274
BseXI GCAGC 2 cut(s) 42, 508
Bsh1236I CGCG 2 cut(s) 114, 574
BshFI GGCC 3 cut(s) 167, 272, 293
BsiHKAI GWGCWC 1 cut(s) 303
BsiHKCI CYCGRG 1 cut(s) 161
BsiSI CCGG 3 cut(s) 46, 86, 268
BslFI GGGAC 1 cut(s) 170
BslI CCNNNNNNNGG 2 cut(s) 45, 154
BsmAI GTCTC 2 cut(s) 36, 373
BsmFI GGGAC 1 cut(s) 170
BsmI GAATGC 1 cut(s) 499
BsnI GGCC 3 cut(s) 167, 272, 293
Bso31I GGTCTC 2 cut(s) 36, 373
BsoBI CYCGRG 1 cut(s) 161
Bsp120I GGGCCC 1 cut(s) 270
Bsp1286I GDGCHC 2 cut(s) 274, 303
Bsp143I GATC 3 cut(s) 120, 280, 325
BspACI CCGC 6 cut(s) 28, 64, 112, 138, 229, 294
BspANI GGCC 3 cut(s) 167, 272, 293
BspCNI CTCAG 1 cut(s) 280
BspFNI CGCG 2 cut(s) 114, 574
BspLI GGNNCC 4 cut(s) 158, 159, 272, 273
BspMI ACCTGC 1 cut(s) 391
BspTNI GGTCTC 2 cut(s) 36, 373
BsrBI CCGCTC 1 cut(s) 231
BsrDI GCAATG 1 cut(s) 498
BsrFI RCCGGY 1 cut(s) 85
BssAI RCCGGY 1 cut(s) 85
BssECI CCNNGG 2 cut(s) 39, 162
BssMI GATC 3 cut(s) 120, 280, 325
BssNI GRCGYC 1 cut(s) 198
BssT1I CCWWGG 1 cut(s) 39
Bst4CI ACNGT 2 cut(s) 320, 399
BstACI GRCGYC 1 cut(s) 198
BstC8I GCNNGC 2 cut(s) 87, 169
BstDEI CTNAG 2 cut(s) 150, 288
BstF5I GGATG 3 cut(s) 174, 408, 471
BstFNI CGCG 2 cut(s) 114, 574
BstH2I RGCGCY 1 cut(s) 56
BstHHI GCGC 2 cut(s) 55, 116
BstKTI GATC 3 cut(s) 123, 283, 328
BstMAI GTCTC 2 cut(s) 36, 373
BstMBI GATC 3 cut(s) 120, 280, 325
BstMWI GCNNNNNNNGC 3 cut(s) 61, 137, 293
BstNSI RCATGY 1 cut(s) 544
BstSCI CCNGG 2 cut(s) 45, 267
BstSLI GKGCMC 1 cut(s) 274
BstUI CGCG 2 cut(s) 114, 574
BstV1I GCAGC 2 cut(s) 42, 508
BstV2I GAAGAC 1 cut(s) 342
BsuI GTATCC 1 cut(s) 469
BsuRI GGCC 3 cut(s) 167, 272, 293
BtsCI GGATG 3 cut(s) 174, 408, 471
BveI ACCTGC 1 cut(s) 391
Cac8I GCNNGC 2 cut(s) 87, 169
CfoI GCGC 2 cut(s) 55, 116
Cfr10I RCCGGY 1 cut(s) 85
Cfr13I GGNCC 4 cut(s) 43, 157, 270, 271
CseI GACGC 2 cut(s) 160, 187
Csp6I GTAC 2 cut(s) 22, 36
CviAII CATG 3 cut(s) 422, 472, 541
CviJI RGCY 9 cut(s) 70, 85, 109, 167, 272, 287, 293, 301, 433
CviKI_1 RGCY 9 cut(s) 70, 85, 109, 167, 272, 287, 293, 301, 433
CviQI GTAC 2 cut(s) 22, 36
DdeI CTNAG 2 cut(s) 150, 288
DpnI GATC 3 cut(s) 122, 282, 327
DpnII GATC 3 cut(s) 120, 280, 325
Ecl136II GAGCTC 1 cut(s) 301
Eco130I CCWWGG 1 cut(s) 39
Eco24I GRGCYC 2 cut(s) 274, 303
Eco31I GGTCTC 2 cut(s) 36, 373
Eco47I GGWCC 2 cut(s) 43, 157
Eco53kI GAGCTC 1 cut(s) 301
Eco88I CYCGRG 1 cut(s) 161
EcoICRI GAGCTC 1 cut(s) 301
EcoO109I RGGNCCY 2 cut(s) 157, 271
EcoT14I CCWWGG 1 cut(s) 39
EcoT38I GRGCYC 2 cut(s) 274, 303
ErhI CCWWGG 1 cut(s) 39
FaeI CATG 3 cut(s) 425, 475, 544
FaiI YATR 6 cut(s) 423, 447, 473, 526, 542, 546
FaqI GGGAC 1 cut(s) 170
FatI CATG 3 cut(s) 421, 471, 540
FauI CCCGC 1 cut(s) 145
Fnu4HI GCNGC 3 cut(s) 56, 294, 497
FokI GGATG 3 cut(s) 161, 395, 478
FriOI GRGCYC 2 cut(s) 274, 303
Fsp4HI GCNGC 3 cut(s) 56, 294, 497
FspBI CTAG 1 cut(s) 356
GlaI GCGC 2 cut(s) 54, 115
GluI GCNGC 3 cut(s) 56, 294, 497
HaeII RGCGCY 1 cut(s) 56
HaeIII GGCC 3 cut(s) 167, 272, 293
HapII CCGG 3 cut(s) 46, 86, 268
HgaI GACGC 2 cut(s) 160, 187
HhaI GCGC 2 cut(s) 55, 116
Hin1I GRCGYC 1 cut(s) 198
Hin1II CATG 3 cut(s) 425, 475, 544
Hin6I GCGC 2 cut(s) 53, 114
HinP1I GCGC 2 cut(s) 53, 114
HincII GTYRAC 1 cut(s) 402
HindII GTYRAC 1 cut(s) 402
HinfI GANTC 1 cut(s) 260
HpaI GTTAAC 1 cut(s) 402
HpaII CCGG 3 cut(s) 46, 86, 268
Hpy166II GTNNAC 1 cut(s) 402
Hpy188I TCNGA 1 cut(s) 462
Hpy188III TCNNGA 3 cut(s) 12, 278, 329
Hpy8I GTNNAC 1 cut(s) 402
Hpy99I CGWCG 3 cut(s) 254, 317, 320
HpyAV CCTTC 1 cut(s) 525
HpyCH4III ACNGT 2 cut(s) 320, 399
HpyCH4IV ACGT 3 cut(s) 75, 225, 415
HpyCH4V TGCA 4 cut(s) 491, 496, 509, 528
HpyF10VI GCNNNNNNNGC 3 cut(s) 61, 137, 293
HpyF3I CTNAG 2 cut(s) 150, 288
HpySE526I ACGT 3 cut(s) 75, 225, 415
Hsp92I GRCGYC 1 cut(s) 198
Hsp92II CATG 3 cut(s) 425, 475, 544
HspAI GCGC 2 cut(s) 53, 114
KflI GGGWCCC 1 cut(s) 157
KroI GCCGGC 1 cut(s) 85
KroNI GCCGGC 1 cut(s) 87
KspAI GTTAAC 1 cut(s) 402
Kzo9I GATC 3 cut(s) 120, 280, 325
LmnI GCTCC 1 cut(s) 114
LpnPI CCDG 7 cut(s) 59, 99, 181, 269, 281, 396, 575
Lsp1109I GCAGC 2 cut(s) 42, 508
MaeI CTAG 1 cut(s) 356
MaeII ACGT 3 cut(s) 75, 225, 415
MaeIII GTNAC 1 cut(s) 390
MalI GATC 3 cut(s) 122, 282, 327
MbiI CCGCTC 1 cut(s) 231
MboI GATC 3 cut(s) 120, 280, 325
MboII GAAGA 3 cut(s) 27, 344, 347
MhlI GDGCHC 2 cut(s) 274, 303
MluI ACGCGT 1 cut(s) 572
MlyI GAGTC 1 cut(s) 254
MmeI TCCRAC 2 cut(s) 231, 436
MnlI CCTC 8 cut(s) 107, 111, 157, 212, 250, 283, 285, 456
MroNI GCCGGC 1 cut(s) 85
MseI TTAA 1 cut(s) 401
MspI CCGG 3 cut(s) 46, 86, 268
MspR9I CCNGG 2 cut(s) 47, 269
Mva1269I GAATGC 1 cut(s) 499
MvnI CGCG 2 cut(s) 114, 574
MwoI GCNNNNNNNGC 3 cut(s) 61, 137, 293
NaeI GCCGGC 1 cut(s) 87
NciI CCSGG 2 cut(s) 47, 269
NdeII GATC 3 cut(s) 120, 280, 325
NgoMIV GCCGGC 1 cut(s) 85
NlaIII CATG 3 cut(s) 425, 475, 544
NlaIV GGNNCC 4 cut(s) 158, 159, 272, 273
NmeAIII GCCGAG 1 cut(s) 322
NspI RCATGY 1 cut(s) 544
PciI ACATGT 1 cut(s) 540
PcsI WCGNNNNNNNCGW 5 cut(s) 255, 309, 321, 336, 395
PctI GAATGC 1 cut(s) 499
PdiI GCCGGC 1 cut(s) 87
PkrI GCNGC 3 cut(s) 57, 295, 498
PleI GAGTC 1 cut(s) 254
PpsI GAGTC 1 cut(s) 254
PpuMI RGGWCCY 1 cut(s) 157
PscI ACATGT 1 cut(s) 540
Psp124BI GAGCTC 1 cut(s) 303
Psp5II RGGWCCY 1 cut(s) 157
PspN4I GGNNCC 4 cut(s) 158, 159, 272, 273
PspOMI GGGCCC 1 cut(s) 270
PspPI GGNCC 4 cut(s) 43, 157, 270, 271
PspPPI RGGWCCY 1 cut(s) 157
RsaI GTAC 2 cut(s) 23, 37
RsaNI GTAC 2 cut(s) 22, 36
SacI GAGCTC 1 cut(s) 303
SaqAI TTAA 1 cut(s) 401
SatI GCNGC 3 cut(s) 56, 294, 497
Sau3AI GATC 3 cut(s) 120, 280, 325
Sau96I GGNCC 4 cut(s) 43, 157, 270, 271
SchI GAGTC 1 cut(s) 254
ScrFI CCNGG 2 cut(s) 47, 269
SduI GDGCHC 2 cut(s) 274, 303
SetI ASST 9 cut(s) 45, 78, 111, 228, 242, 303, 385, 418, 536
SinI GGWCC 2 cut(s) 43, 157
SsiI CCGC 6 cut(s) 28, 64, 112, 138, 229, 294
SspMI CTAG 1 cut(s) 356
SstI GAGCTC 1 cut(s) 303
StyD4I CCNGG 2 cut(s) 45, 267
StyI CCWWGG 1 cut(s) 39
TaaI ACNGT 2 cut(s) 320, 399
TaiI ACGT 3 cut(s) 78, 228, 418
TaqI TCGA 4 cut(s) 123, 252, 303, 330
TatI WGTACW 1 cut(s) 21
TauI GCSGC 1 cut(s) 296
Tru1I TTAA 1 cut(s) 401
Tru9I TTAA 1 cut(s) 401
TseI GCWGC 2 cut(s) 55, 496
TspDTI ATGAA 2 cut(s) 410, 460
TspGWI ACGGA 1 cut(s) 382
VpaK11BI GGWCC 2 cut(s) 43, 157
XceI RCATGY 1 cut(s) 544
XcmI CCANNNNNNNNNTGG 1 cut(s) 46
XspI CTAG 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.