RLG00000011923

Ribosome biogenesis protein Nop16

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0009327
Physical Location & Seq
Reverse (-)
13812900 .. 13814732
1833 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011923

Sequence Viewer

Length: 606 bp
ATGGGAGGGTCAAGAAGAAAGTACAAGCGGTCTCGTACCAAGGTCCGGGTGGCGCTGCCGAAGCGGAAGCCCAACGTGTTCAAGCCGGCCTTCTGTCTCCCTCCCAAGCTCCGCGCCTTGATCGACCAAGCAGAACCCGCTTCTCGCCCTAAGTGGGACCCCGAGGGCAGCGTCATCCAAAACTACAAGTCGTTCGGCGTCCTCTCCAACCCTAACTTGCTCAACGTCCGCTCTCGCACCTCTCACATCGTCGAAAGCGACTCTCTCCAGGCCCCTCCCGATCAGGCTGAGGCCGCCGAGCTCGACCCCGACGGTAGCGATCTCGAAGAAGACGATTTGAAAACTACTCTAGGAAAGAAACGGAGAGATGGGAGACCTGCTTCGTTACTACCGTTAACCACCATCCAACGTGTTCATGTCAGTCGGCTTATCGAGAAATATGGAGATGACTATCAGAGGATGTTCATGGATACAAAACTAAATGCAATGCAGCATTCTGTTGCAACTTTGGAGAAGTTGTGCAGAAGAAATATGACATTAGTTTTATTTGGACCTATTCTTATTCCGGATGGAAGTGGAATGATCCTAATGCAAGTTGGTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nop16

Protein Analysis

202

Amino Acids

22.54

Weight (kDa)

9.78

Isoelectric Point (pI)

51.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nop16 PF09420 89 - 176 6e-15 Ribosome biogenesis protein Nop16
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 385
AccBSI CCGCTC 1 cut(s) 231
AccII CGCG 1 cut(s) 114
AccIII TCCGGA 1 cut(s) 565
AciI CCGC 6 cut(s) 28, 64, 112, 138, 229, 294
AclWI GGATC 1 cut(s) 577
AcyI GRCGYC 1 cut(s) 198
AfaI GTAC 2 cut(s) 23, 37
AfiI CCNNNNNNNGG 2 cut(s) 45, 154
AflIII ACRYGT 2 cut(s) 75, 409
AgsI TTSAA 2 cut(s) 82, 340
AjnI CCWGG 1 cut(s) 267
AluBI AGCT 2 cut(s) 109, 301
AluI AGCT 2 cut(s) 109, 301
Alw21I GWGCWC 1 cut(s) 303
Alw26I GTCTC 3 cut(s) 36, 101, 367
AlwI GGATC 1 cut(s) 577
Ama87I CYCGRG 1 cut(s) 161
Aor13HI TCCGGA 1 cut(s) 565
AoxI GGCC 3 cut(s) 87, 270, 291
ApeKI GCWGC 3 cut(s) 55, 168, 490
AspLEI GCGC 2 cut(s) 55, 116
AspS9I GGNCC 4 cut(s) 43, 157, 271, 551
AsuC2I CCSGG 1 cut(s) 47
AvaI CYCGRG 1 cut(s) 161
AvaII GGWCC 3 cut(s) 43, 157, 551
BanII GRGCYC 1 cut(s) 303
BbsI GAAGAC 1 cut(s) 336
Bbv12I GWGCWC 1 cut(s) 303
BbvCI CCTCAGC 1 cut(s) 288
BbvI GCAGC 3 cut(s) 42, 180, 502
BccI CCATC 3 cut(s) 362, 410, 563
BciT130I CCWGG 1 cut(s) 269
BciVI GTATCC 1 cut(s) 463
BcnI CCSGG 1 cut(s) 47
BcoDI GTCTC 3 cut(s) 36, 101, 367
BfaI CTAG 1 cut(s) 350
BfoI RGCGCY 1 cut(s) 56
BfuAI ACCTGC 1 cut(s) 385
BfuI GTATCC 1 cut(s) 463
BisI GCNGC 4 cut(s) 56, 169, 294, 491
BlsI GCNGC 4 cut(s) 57, 170, 295, 492
Bme1390I CCNGG 2 cut(s) 47, 269
Bme18I GGWCC 3 cut(s) 43, 157, 551
BmeT110I CYCGRG 1 cut(s) 161
BmgT120I GGNCC 4 cut(s) 43, 157, 271, 551
BmiI GGNNCC 3 cut(s) 158, 159, 273
BmrFI CCNGG 2 cut(s) 47, 269
BpiI GAAGAC 1 cut(s) 336
BpmI CTGGAG 1 cut(s) 251
Bpu10I CCTNAGC 1 cut(s) 288
BpuMI CCSGG 1 cut(s) 47
BsaBI GATNNNNATC 1 cut(s) 450
BsaHI GRCGYC 1 cut(s) 198
BsaI GGTCTC 2 cut(s) 36, 367
BsaJI CCNNGG 2 cut(s) 39, 162
BsaWI WCCGGW 1 cut(s) 565
BsaXI ACNNNNNCTCC 2 cut(s) 503, 533
Bsc4I CCNNNNNNNGG 2 cut(s) 45, 154
Bse118I RCCGGY 1 cut(s) 85
Bse3DI GCAATG 1 cut(s) 492
Bse8I GATNNNNATC 1 cut(s) 450
BseAI TCCGGA 1 cut(s) 565
BseBI CCWGG 1 cut(s) 269
BseDI CCNNGG 2 cut(s) 39, 162
BseGI GGATG 4 cut(s) 174, 402, 465, 574
BseJI GATNNNNATC 1 cut(s) 450
BseLI CCNNNNNNNGG 2 cut(s) 45, 154
BseMI GCAATG 1 cut(s) 492
BseMII CTCAG 1 cut(s) 279
BseXI GCAGC 3 cut(s) 42, 180, 502
BsgI GTGCAG 1 cut(s) 541
Bsh1236I CGCG 1 cut(s) 114
BshFI GGCC 3 cut(s) 89, 272, 293
BsiHKAI GWGCWC 1 cut(s) 303
BsiHKCI CYCGRG 1 cut(s) 161
BsiSI CCGG 3 cut(s) 46, 86, 566
BslFI GGGAC 1 cut(s) 170
BslI CCNNNNNNNGG 2 cut(s) 45, 154
BsmAI GTCTC 3 cut(s) 36, 101, 367
BsmFI GGGAC 1 cut(s) 170
BsmI GAATGC 1 cut(s) 493
BsnI GGCC 3 cut(s) 89, 272, 293
Bso31I GGTCTC 2 cut(s) 36, 367
BsoBI CYCGRG 1 cut(s) 161
Bsp1286I GDGCHC 1 cut(s) 303
Bsp13I TCCGGA 1 cut(s) 565
Bsp143I GATC 4 cut(s) 120, 280, 319, 582
BspACI CCGC 6 cut(s) 28, 64, 112, 138, 229, 294
BspANI GGCC 3 cut(s) 89, 272, 293
BspCNI CTCAG 1 cut(s) 280
BspEI TCCGGA 1 cut(s) 565
BspFNI CGCG 1 cut(s) 114
BspLI GGNNCC 3 cut(s) 158, 159, 273
BspMI ACCTGC 1 cut(s) 385
BspPI GGATC 1 cut(s) 577
BspTNI GGTCTC 2 cut(s) 36, 367
BsrBI CCGCTC 1 cut(s) 231
BsrDI GCAATG 1 cut(s) 492
BsrFI RCCGGY 1 cut(s) 85
BssAI RCCGGY 1 cut(s) 85
BssECI CCNNGG 2 cut(s) 39, 162
BssMI GATC 4 cut(s) 120, 280, 319, 582
BssNI GRCGYC 1 cut(s) 198
BssT1I CCWWGG 1 cut(s) 39
Bst2UI CCWGG 1 cut(s) 269
Bst4CI ACNGT 2 cut(s) 314, 393
BstACI GRCGYC 1 cut(s) 198
BstC8I GCNNGC 1 cut(s) 87
BstDEI CTNAG 2 cut(s) 150, 288
BstF5I GGATG 4 cut(s) 174, 402, 465, 574
BstFNI CGCG 1 cut(s) 114
BstH2I RGCGCY 1 cut(s) 56
BstHHI GCGC 2 cut(s) 55, 116
BstKTI GATC 4 cut(s) 123, 283, 322, 585
BstMAI GTCTC 3 cut(s) 36, 101, 367
BstMBI GATC 4 cut(s) 120, 280, 319, 582
BstMWI GCNNNNNNNGC 3 cut(s) 61, 137, 293
BstNI CCWGG 1 cut(s) 269
BstSCI CCNGG 2 cut(s) 45, 267
BstUI CGCG 1 cut(s) 114
BstV1I GCAGC 3 cut(s) 42, 180, 502
BstV2I GAAGAC 1 cut(s) 336
BsuI GTATCC 1 cut(s) 463
BsuRI GGCC 3 cut(s) 89, 272, 293
BtsCI GGATG 4 cut(s) 174, 402, 465, 574
BveI ACCTGC 1 cut(s) 385
Cac8I GCNNGC 1 cut(s) 87
CfoI GCGC 2 cut(s) 55, 116
Cfr10I RCCGGY 1 cut(s) 85
Cfr13I GGNCC 4 cut(s) 43, 157, 271, 551
CseI GACGC 2 cut(s) 160, 187
Csp6I GTAC 2 cut(s) 22, 36
CviAII CATG 2 cut(s) 416, 466
CviJI RGCY 9 cut(s) 70, 85, 89, 109, 272, 287, 293, 301, 427
CviKI_1 RGCY 9 cut(s) 70, 85, 89, 109, 272, 287, 293, 301, 427
CviQI GTAC 2 cut(s) 22, 36
DdeI CTNAG 2 cut(s) 150, 288
DpnI GATC 4 cut(s) 122, 282, 321, 584
DpnII GATC 4 cut(s) 120, 280, 319, 582
Ecl136II GAGCTC 1 cut(s) 301
Eco130I CCWWGG 1 cut(s) 39
Eco24I GRGCYC 1 cut(s) 303
Eco31I GGTCTC 2 cut(s) 36, 367
Eco47I GGWCC 3 cut(s) 43, 157, 551
Eco53kI GAGCTC 1 cut(s) 301
Eco88I CYCGRG 1 cut(s) 161
EcoICRI GAGCTC 1 cut(s) 301
EcoO109I RGGNCCY 2 cut(s) 157, 271
EcoRII CCWGG 1 cut(s) 267
EcoT14I CCWWGG 1 cut(s) 39
EcoT38I GRGCYC 1 cut(s) 303
ErhI CCWWGG 1 cut(s) 39
FaeI CATG 2 cut(s) 419, 469
FaiI YATR 5 cut(s) 417, 441, 467, 533, 604
FalI AAGNNNNNCTT 2 cut(s) 74, 106
FaqI GGGAC 1 cut(s) 170
FatI CATG 2 cut(s) 415, 465
FauI CCCGC 1 cut(s) 145
Fnu4HI GCNGC 4 cut(s) 56, 169, 294, 491
FokI GGATG 4 cut(s) 161, 389, 472, 581
FriOI GRGCYC 1 cut(s) 303
Fsp4HI GCNGC 4 cut(s) 56, 169, 294, 491
FspBI CTAG 1 cut(s) 350
GlaI GCGC 2 cut(s) 54, 115
GluI GCNGC 4 cut(s) 56, 169, 294, 491
GsuI CTGGAG 1 cut(s) 251
HaeII RGCGCY 1 cut(s) 56
HaeIII GGCC 3 cut(s) 89, 272, 293
HapII CCGG 3 cut(s) 46, 86, 566
HgaI GACGC 2 cut(s) 160, 187
HhaI GCGC 2 cut(s) 55, 116
Hin1I GRCGYC 1 cut(s) 198
Hin1II CATG 2 cut(s) 419, 469
Hin6I GCGC 2 cut(s) 53, 114
HinP1I GCGC 2 cut(s) 53, 114
HincII GTYRAC 1 cut(s) 396
HindII GTYRAC 1 cut(s) 396
HinfI GANTC 1 cut(s) 260
HpaI GTTAAC 1 cut(s) 396
HpaII CCGG 3 cut(s) 46, 86, 566
Hpy166II GTNNAC 1 cut(s) 396
Hpy188I TCNGA 1 cut(s) 456
Hpy188III TCNNGA 5 cut(s) 12, 278, 323, 433, 566
Hpy8I GTNNAC 1 cut(s) 396
Hpy99I CGWCG 2 cut(s) 254, 314
HpyAV CCTTC 1 cut(s) 100
HpyCH4III ACNGT 2 cut(s) 314, 393
HpyCH4IV ACGT 3 cut(s) 75, 225, 409
HpyCH4V TGCA 6 cut(s) 485, 490, 503, 522, 592, 602
HpyF10VI GCNNNNNNNGC 3 cut(s) 61, 137, 293
HpyF3I CTNAG 2 cut(s) 150, 288
HpySE526I ACGT 3 cut(s) 75, 225, 409
Hsp92I GRCGYC 1 cut(s) 198
Hsp92II CATG 2 cut(s) 419, 469
HspAI GCGC 2 cut(s) 53, 114
KflI GGGWCCC 1 cut(s) 157
Kpn2I TCCGGA 1 cut(s) 565
KroI GCCGGC 1 cut(s) 85
KroNI GCCGGC 1 cut(s) 87
KspAI GTTAAC 1 cut(s) 396
Kzo9I GATC 4 cut(s) 120, 280, 319, 582
LmnI GCTCC 1 cut(s) 114
LpnPI CCDG 7 cut(s) 59, 99, 254, 269, 281, 390, 579
Lsp1109I GCAGC 3 cut(s) 42, 180, 502
MaeI CTAG 1 cut(s) 350
MaeII ACGT 3 cut(s) 75, 225, 409
MaeIII GTNAC 1 cut(s) 384
MalI GATC 4 cut(s) 122, 282, 321, 584
MbiI CCGCTC 1 cut(s) 231
MboI GATC 4 cut(s) 120, 280, 319, 582
MboII GAAGA 4 cut(s) 27, 338, 341, 537
MhlI GDGCHC 1 cut(s) 303
MlyI GAGTC 1 cut(s) 254
MmeI TCCRAC 2 cut(s) 231, 430
MnlI CCTC 7 cut(s) 111, 157, 212, 250, 283, 285, 450
MroI TCCGGA 1 cut(s) 565
MroNI GCCGGC 1 cut(s) 85
MseI TTAA 1 cut(s) 395
MspI CCGG 3 cut(s) 46, 86, 566
MspR9I CCNGG 2 cut(s) 47, 269
Mva1269I GAATGC 1 cut(s) 493
MvaI CCWGG 1 cut(s) 269
MvnI CGCG 1 cut(s) 114
MwoI GCNNNNNNNGC 3 cut(s) 61, 137, 293
NaeI GCCGGC 1 cut(s) 87
NciI CCSGG 1 cut(s) 47
NdeII GATC 4 cut(s) 120, 280, 319, 582
NgoMIV GCCGGC 1 cut(s) 85
NlaIII CATG 2 cut(s) 419, 469
NlaIV GGNNCC 3 cut(s) 158, 159, 273
NmeAIII GCCGAG 1 cut(s) 322
PcsI WCGNNNNNNNCGW 3 cut(s) 255, 330, 389
PctI GAATGC 1 cut(s) 493
PdiI GCCGGC 1 cut(s) 87
PkrI GCNGC 4 cut(s) 57, 170, 295, 492
PleI GAGTC 1 cut(s) 254
PpsI GAGTC 1 cut(s) 254
PpuMI RGGWCCY 1 cut(s) 157
Psp124BI GAGCTC 1 cut(s) 303
Psp5II RGGWCCY 1 cut(s) 157
Psp6I CCWGG 1 cut(s) 267
PspGI CCWGG 1 cut(s) 267
PspN4I GGNNCC 3 cut(s) 158, 159, 273
PspPI GGNCC 4 cut(s) 43, 157, 271, 551
PspPPI RGGWCCY 1 cut(s) 157
RsaI GTAC 2 cut(s) 23, 37
RsaNI GTAC 2 cut(s) 22, 36
SacI GAGCTC 1 cut(s) 303
SaqAI TTAA 1 cut(s) 395
SatI GCNGC 4 cut(s) 56, 169, 294, 491
Sau3AI GATC 4 cut(s) 120, 280, 319, 582
Sau96I GGNCC 4 cut(s) 43, 157, 271, 551
SchI GAGTC 1 cut(s) 254
ScrFI CCNGG 2 cut(s) 47, 269
SduI GDGCHC 1 cut(s) 303
SetI ASST 9 cut(s) 45, 78, 111, 228, 242, 303, 379, 412, 556
SinI GGWCC 3 cut(s) 43, 157, 551
SsiI CCGC 6 cut(s) 28, 64, 112, 138, 229, 294
SspMI CTAG 1 cut(s) 350
SstI GAGCTC 1 cut(s) 303
StyD4I CCNGG 2 cut(s) 45, 267
StyI CCWWGG 1 cut(s) 39
TaaI ACNGT 2 cut(s) 314, 393
TaiI ACGT 3 cut(s) 78, 228, 412
TaqI TCGA 5 cut(s) 123, 252, 303, 324, 432
TatI WGTACW 1 cut(s) 21
TauI GCSGC 1 cut(s) 296
Tru1I TTAA 1 cut(s) 395
Tru9I TTAA 1 cut(s) 395
TseI GCWGC 3 cut(s) 55, 168, 490
TspDTI ATGAA 2 cut(s) 404, 454
TspGWI ACGGA 1 cut(s) 376
VpaK11BI GGWCC 3 cut(s) 43, 157, 551
XcmI CCANNNNNNNNNTGG 1 cut(s) 46
XspI CTAG 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.