Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0009327

Physical Location & Seq

Genomic Coordinates Forward (+)

52530142 .. 52531404

Gene Structure 1263 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG373700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGTTGTCGGGCAGCGTCATCCAAAACTACAAGTCGTTCGGCGTCCTCTCCAACCCTAAAGTGCTTAACGTCCGCTCTCACATCGTCGAAAGCGACTCTCTCCTGGCCCCTCCCGATCAGGCTGAGGCCGCCGAGCTCGACCCCAACGACGACGGTAGCGATCTCGAAGAAGACGGGAACGAAGCATTTCAGGCCGGGAGGCATACTGAAGCTGTTGAACATTATACTACTGCTTTGTCATGTAATGTAGAATCTCGTCCTTTCACAGCTGTTTGTTTGTGCAATCGTGCTGTTGCATACAAAGCGCTGGGTCAGATTACTGATGCTAATGCAGATTGCAGCCTAGCTATAGCTCTCGAGGATGAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006457 GO:0006458 GO:0008047 GO:0008150 GO:0009987 GO:0030234 GO:0031072 GO:0031974 GO:0031981 GO:0032781 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043462 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050790 GO:0050794 GO:0051084 GO:0051085 GO:0051336 GO:0051345 GO:0060589 GO:0060590 GO:0061077 GO:0065007 GO:0065009 GO:0070013 GO:0080134 GO:0080135 GO:0098772 GO:1900034

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ TPR_8

Protein Analysis

123

Amino Acids

13.14

Weight (kDa)

4.23

Isoelectric Point (pI)

40.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02870
fragaria_vesca	FvH4_2g25580
malus_domestica	MD03G1286500.v1.1 MD05G1198200.v1.1 MD11G1313700.v1.1
prunus_persica	Prupe.8G259900_v2.0.a1
pyrus_communis	pycom03g22710 pycom11g27260
rosa_chinensis	RchiOBHm_Chr2g0134071 RchiOBHm_Chr6g0293791
rosa_laevigata	RLG00000011923
rosa_multiflora	Rmu_sc0001782.1_g000027
rosa_roxburghii	Rroxscaffold_7G00173900
rosa_rugosa	Rorug06G0238100
rosa_samantha	Rh2BG373700 Rh2DG390300 Rh5BG142100 Rh6AG351400 Rh6BG358300 Rh6CG365400 Rh6DG352100
rosa_wichuraiana	Rw6G030570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	75
AciI	CCGC	2 cut(s)	73, 129
AcuI	CTGAAG	1 cut(s)	228
AcyI	GRCGYC	1 cut(s)	42
AfeI	AGCGCT	1 cut(s)	306
AgsI	TTSAA	1 cut(s)	218
AjnI	CCWGG	1 cut(s)	102
AluBI	AGCT	5 cut(s)	136, 212, 269, 347, 353
AluI	AGCT	5 cut(s)	136, 212, 269, 347, 353
Alw21I	GWGCWC	1 cut(s)	138
Ama87I	CYCGRG	1 cut(s)	356
Aor51HI	AGCGCT	1 cut(s)	306
AoxI	GGCC	3 cut(s)	105, 126, 192
ApeKI	GCWGC	2 cut(s)	12, 339
Asp700I	GAANNNNTTC	1 cut(s)	186
AspLEI	GCGC	1 cut(s)	307
AspS9I	GGNCC	1 cut(s)	106
AsuC2I	CCSGG	1 cut(s)	196
AvaI	CYCGRG	1 cut(s)	356
BanII	GRGCYC	1 cut(s)	138
BbsI	GAAGAC	1 cut(s)	177
Bbv12I	GWGCWC	1 cut(s)	138
BbvCI	CCTCAGC	1 cut(s)	123
BbvI	GCAGC	2 cut(s)	24, 351
BciT130I	CCWGG	1 cut(s)	104
BcnI	CCSGG	1 cut(s)	196
BfaI	CTAG	1 cut(s)	344
BfmI	CTRYAG	1 cut(s)	348
BfoI	RGCGCY	1 cut(s)	308
BisI	GCNGC	3 cut(s)	13, 129, 340
BlsI	GCNGC	3 cut(s)	14, 130, 341
Bme1390I	CCNGG	2 cut(s)	104, 196
BmeT110I	CYCGRG	1 cut(s)	356
BmgT120I	GGNCC	1 cut(s)	106
BmiI	GGNNCC	1 cut(s)	108
BmrFI	CCNGG	2 cut(s)	104, 196
BmsI	GCATC	1 cut(s)	313
BpiI	GAAGAC	1 cut(s)	177
Bpu10I	CCTNAGC	1 cut(s)	123
BpuMI	CCSGG	1 cut(s)	196
BsaHI	GRCGYC	1 cut(s)	42
BseBI	CCWGG	1 cut(s)	104
BseGI	GGATG	2 cut(s)	18, 367
BseMII	CTCAG	1 cut(s)	114
BseXI	GCAGC	2 cut(s)	24, 351
BseYI	CCCAGC	1 cut(s)	307
BshFI	GGCC	3 cut(s)	107, 128, 194
BsiHKAI	GWGCWC	1 cut(s)	138
BsiHKCI	CYCGRG	1 cut(s)	356
BsiSI	CCGG	1 cut(s)	195
BsnI	GGCC	3 cut(s)	107, 128, 194
BsoBI	CYCGRG	1 cut(s)	356
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp143I	GATC	2 cut(s)	115, 160
BspACI	CCGC	2 cut(s)	73, 129
BspANI	GGCC	3 cut(s)	107, 128, 194
BspCNI	CTCAG	1 cut(s)	115
BspLI	GGNNCC	1 cut(s)	108
BsrBI	CCGCTC	1 cut(s)	75
BssMI	GATC	2 cut(s)	115, 160
BssNI	GRCGYC	1 cut(s)	42
Bst2UI	CCWGG	1 cut(s)	104
Bst4CI	ACNGT	1 cut(s)	155
BstACI	GRCGYC	1 cut(s)	42
BstDEI	CTNAG	1 cut(s)	123
BstF5I	GGATG	2 cut(s)	18, 367
BstH2I	RGCGCY	1 cut(s)	308
BstHHI	GCGC	1 cut(s)	307
BstKTI	GATC	2 cut(s)	118, 163
BstMBI	GATC	2 cut(s)	115, 160
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 191, 302
BstNI	CCWGG	1 cut(s)	104
BstSCI	CCNGG	2 cut(s)	102, 194
BstSFI	CTRYAG	1 cut(s)	348
BstV1I	GCAGC	2 cut(s)	24, 351
BstV2I	GAAGAC	1 cut(s)	177
BsuRI	GGCC	3 cut(s)	107, 128, 194
BtsCI	GGATG	2 cut(s)	18, 367
CfoI	GCGC	1 cut(s)	307
Cfr13I	GGNCC	1 cut(s)	106
CseI	GACGC	2 cut(s)	4, 31
CviAII	CATG	1 cut(s)	240
DdeI	CTNAG	1 cut(s)	123
DpnI	GATC	2 cut(s)	117, 162
DpnII	GATC	2 cut(s)	115, 160
Ecl136II	GAGCTC	1 cut(s)	136
Eco24I	GRGCYC	1 cut(s)	138
Eco47III	AGCGCT	1 cut(s)	306
Eco53kI	GAGCTC	1 cut(s)	136
Eco57I	CTGAAG	1 cut(s)	228
Eco88I	CYCGRG	1 cut(s)	356
EcoICRI	GAGCTC	1 cut(s)	136
EcoRII	CCWGG	1 cut(s)	102
EcoT38I	GRGCYC	1 cut(s)	138
FaeI	CATG	1 cut(s)	243
FaiI	YATR	5 cut(s)	204, 225, 241, 298, 350
FatI	CATG	1 cut(s)	239
Fnu4HI	GCNGC	3 cut(s)	13, 129, 340
FokI	GGATG	1 cut(s)	5
FriOI	GRGCYC	1 cut(s)	138
Fsp4HI	GCNGC	3 cut(s)	13, 129, 340
FspBI	CTAG	1 cut(s)	344
GlaI	GCGC	1 cut(s)	306
GluI	GCNGC	3 cut(s)	13, 129, 340
GsaI	CCCAGC	1 cut(s)	311
HaeII	RGCGCY	1 cut(s)	308
HaeIII	GGCC	3 cut(s)	107, 128, 194
HapII	CCGG	1 cut(s)	195
HgaI	GACGC	2 cut(s)	4, 31
HhaI	GCGC	1 cut(s)	307
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	1 cut(s)	243
Hin6I	GCGC	1 cut(s)	305
HinP1I	GCGC	1 cut(s)	305
HinfI	GANTC	2 cut(s)	95, 251
HpaII	CCGG	1 cut(s)	195
Hpy188I	TCNGA	1 cut(s)	315
Hpy188III	TCNNGA	3 cut(s)	113, 164, 356
Hpy99I	CGWCG	3 cut(s)	89, 152, 155
HpyCH4III	ACNGT	1 cut(s)	155
HpyCH4IV	ACGT	1 cut(s)	69
HpyCH4V	TGCA	4 cut(s)	282, 296, 332, 339
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 191, 302
HpyF3I	CTNAG	1 cut(s)	123
HpySE526I	ACGT	1 cut(s)	69
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	1 cut(s)	243
HspAI	GCGC	1 cut(s)	305
Kzo9I	GATC	2 cut(s)	115, 160
LpnPI	CCDG	6 cut(s)	89, 104, 116, 176, 208, 293
Lsp1109I	GCAGC	2 cut(s)	24, 351
LweI	GCATC	1 cut(s)	313
MaeI	CTAG	1 cut(s)	344
MaeII	ACGT	1 cut(s)	69
MalI	GATC	2 cut(s)	117, 162
MbiI	CCGCTC	1 cut(s)	75
MboI	GATC	2 cut(s)	115, 160
MboII	GAAGA	2 cut(s)	179, 182
MhlI	GDGCHC	1 cut(s)	138
MlyI	GAGTC	1 cut(s)	89
MmeI	TCCRAC	1 cut(s)	75
MnlI	CCTC	5 cut(s)	56, 118, 120, 192, 352
MroXI	GAANNNNTTC	1 cut(s)	186
MseI	TTAA	2 cut(s)	66, 370
MspA1I	CMGCKG	1 cut(s)	269
MspI	CCGG	1 cut(s)	195
MspR9I	CCNGG	2 cut(s)	104, 196
MvaI	CCWGG	1 cut(s)	104
MwoI	GCNNNNNNNGC	3 cut(s)	128, 191, 302
NciI	CCSGG	1 cut(s)	196
NdeII	GATC	2 cut(s)	115, 160
NlaIII	CATG	1 cut(s)	243
NlaIV	GGNNCC	1 cut(s)	108
NmeAIII	GCCGAG	1 cut(s)	157
PaeR7I	CTCGAG	1 cut(s)	356
PcsI	WCGNNNNNNNCGW	3 cut(s)	90, 144, 156
PdmI	GAANNNNTTC	1 cut(s)	186
PfeI	GAWTC	1 cut(s)	251
PkrI	GCNGC	3 cut(s)	14, 130, 341
PleI	GAGTC	1 cut(s)	89
PpsI	GAGTC	1 cut(s)	89
Psp124BI	GAGCTC	1 cut(s)	138
Psp6I	CCWGG	1 cut(s)	102
PspFI	CCCAGC	1 cut(s)	307
PspGI	CCWGG	1 cut(s)	102
PspN4I	GGNNCC	1 cut(s)	108
PspPI	GGNCC	1 cut(s)	106
PvuII	CAGCTG	1 cut(s)	269
SacI	GAGCTC	1 cut(s)	138
SaqAI	TTAA	2 cut(s)	66, 370
SatI	GCNGC	3 cut(s)	13, 129, 340
Sau3AI	GATC	2 cut(s)	115, 160
Sau96I	GGNCC	1 cut(s)	106
SchI	GAGTC	1 cut(s)	89
ScrFI	CCNGG	2 cut(s)	104, 196
SduI	GDGCHC	1 cut(s)	138
SetI	ASST	6 cut(s)	72, 138, 214, 271, 349, 355
SfaNI	GCATC	1 cut(s)	313
SfcI	CTRYAG	1 cut(s)	348
Sfr274I	CTCGAG	1 cut(s)	356
SlaI	CTCGAG	1 cut(s)	356
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
SsiI	CCGC	2 cut(s)	73, 129
SspMI	CTAG	1 cut(s)	344
SstI	GAGCTC	1 cut(s)	138
StyD4I	CCNGG	2 cut(s)	102, 194
TaaI	ACNGT	1 cut(s)	155
TaiI	ACGT	1 cut(s)	72
TaqI	TCGA	4 cut(s)	87, 138, 165, 357
TauI	GCSGC	1 cut(s)	131
TfiI	GAWTC	1 cut(s)	251
Tru1I	TTAA	2 cut(s)	66, 370
Tru9I	TTAA	2 cut(s)	66, 370
TseI	GCWGC	2 cut(s)	12, 339
XhoI	CTCGAG	1 cut(s)	356
XmnI	GAANNNNTTC	1 cut(s)	186
XspI	CTAG	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.