Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0009327

Physical Location & Seq

Genomic Coordinates Forward (+)

55192838 .. 55194126

Gene Structure 1289 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG352100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGGAGGGTCAAGAAGAAAGTACAAGCGGTCTCGTACCAAGGTCCGGGTGGCGCTGCCGAAGCGGAAGCCCAACGTGTTCAAGCCGGCCTTCTGTCTCCCTCCCAAGCTCCGCGCCTTGATCGACCAAGCAGAACCCGCTTCTCGCCCTAAGTGGGACCCCGAGGGCAGCGTCATCCAAAACTACAAGTCGTTCGGCGTCCTCTCCAACCCTAACTTGCTCAACGTCCGCTCTCGCACCTCTCACATCGTCGAAAGCGACTCTGTCCAGGCTCCTCCCGATGGGGAGGCTGAGGCCGCCGAGCTCGACCCCAACGACGACGGTAGCGATCTCGAAGAAGACGATTTGAAAACTACTCTAGGAAAGAAACGGAGAGATGGGAGACCTGCTTCGTTACTACCGTTAACCACCATCCAACGTGTTCATGTCAGTCGGCTTATTGAGAAATATGGAGATGACTATCAGGTGGGATTGGGATACAAGATTTCAAATTGTTTGAAGTTCAAGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nop16

Protein Analysis

170

Amino Acids

19.04

Weight (kDa)

9.63

Isoelectric Point (pI)

52.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02870
fragaria_vesca	FvH4_2g25580
malus_domestica	MD03G1286500.v1.1 MD05G1198200.v1.1 MD11G1313700.v1.1
prunus_persica	Prupe.8G259900_v2.0.a1
pyrus_communis	pycom03g22710 pycom11g27260
rosa_chinensis	RchiOBHm_Chr2g0134071 RchiOBHm_Chr6g0293791
rosa_laevigata	RLG00000011923
rosa_multiflora	Rmu_sc0001782.1_g000027
rosa_roxburghii	Rroxscaffold_7G00173900
rosa_rugosa	Rorug06G0238100
rosa_samantha	Rh2BG373700 Rh2DG390300 Rh5BG142100 Rh6AG351400 Rh6BG358300 Rh6CG365400 Rh6DG352100
rosa_wichuraiana	Rw6G030570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	394
AccBSI	CCGCTC	1 cut(s)	231
AccII	CGCG	1 cut(s)	114
AciI	CCGC	6 cut(s)	28, 64, 112, 138, 229, 297
AcyI	GRCGYC	1 cut(s)	198
AfaI	GTAC	2 cut(s)	23, 37
AfiI	CCNNNNNNNGG	3 cut(s)	45, 154, 281
AflIII	ACRYGT	2 cut(s)	75, 418
AgsI	TTSAA	5 cut(s)	82, 349, 489, 499, 505
AjnI	CCWGG	1 cut(s)	267
AluBI	AGCT	2 cut(s)	109, 304
AluI	AGCT	2 cut(s)	109, 304
Alw21I	GWGCWC	1 cut(s)	306
Alw26I	GTCTC	3 cut(s)	36, 101, 376
Ama87I	CYCGRG	1 cut(s)	161
AoxI	GGCC	2 cut(s)	87, 294
ApeKI	GCWGC	2 cut(s)	55, 168
AspLEI	GCGC	2 cut(s)	55, 116
AspS9I	GGNCC	2 cut(s)	43, 157
AsuC2I	CCSGG	1 cut(s)	47
AvaI	CYCGRG	1 cut(s)	161
AvaII	GGWCC	2 cut(s)	43, 157
BanII	GRGCYC	1 cut(s)	306
BbsI	GAAGAC	1 cut(s)	345
Bbv12I	GWGCWC	1 cut(s)	306
BbvCI	CCTCAGC	1 cut(s)	291
BbvI	GCAGC	2 cut(s)	42, 180
BccI	CCATC	3 cut(s)	275, 371, 419
BciT130I	CCWGG	1 cut(s)	269
BciVI	GTATCC	1 cut(s)	470
BcnI	CCSGG	1 cut(s)	47
BcoDI	GTCTC	3 cut(s)	36, 101, 376
BfaI	CTAG	1 cut(s)	359
BfoI	RGCGCY	1 cut(s)	56
BfuAI	ACCTGC	1 cut(s)	394
BfuI	GTATCC	1 cut(s)	470
BisI	GCNGC	3 cut(s)	56, 169, 297
BlsI	GCNGC	3 cut(s)	57, 170, 298
Bme1390I	CCNGG	2 cut(s)	47, 269
Bme18I	GGWCC	2 cut(s)	43, 157
BmeT110I	CYCGRG	1 cut(s)	161
BmgT120I	GGNCC	2 cut(s)	43, 157
BmiI	GGNNCC	3 cut(s)	158, 159, 273
BmrFI	CCNGG	2 cut(s)	47, 269
BpiI	GAAGAC	1 cut(s)	345
Bpu10I	CCTNAGC	1 cut(s)	291
BpuMI	CCSGG	1 cut(s)	47
BsaBI	GATNNNNATC	1 cut(s)	459
BsaHI	GRCGYC	1 cut(s)	198
BsaI	GGTCTC	2 cut(s)	36, 376
BsaJI	CCNNGG	2 cut(s)	39, 162
Bsc4I	CCNNNNNNNGG	3 cut(s)	45, 154, 281
Bse118I	RCCGGY	1 cut(s)	85
Bse8I	GATNNNNATC	1 cut(s)	459
BseBI	CCWGG	1 cut(s)	269
BseDI	CCNNGG	2 cut(s)	39, 162
BseGI	GGATG	2 cut(s)	174, 411
BseJI	GATNNNNATC	1 cut(s)	459
BseLI	CCNNNNNNNGG	3 cut(s)	45, 154, 281
BseMII	CTCAG	1 cut(s)	282
BseRI	GAGGAG	1 cut(s)	264
BseXI	GCAGC	2 cut(s)	42, 180
Bsh1236I	CGCG	1 cut(s)	114
BshFI	GGCC	2 cut(s)	89, 296
BsiHKAI	GWGCWC	1 cut(s)	306
BsiHKCI	CYCGRG	1 cut(s)	161
BsiSI	CCGG	2 cut(s)	46, 86
BslFI	GGGAC	1 cut(s)	170
BslI	CCNNNNNNNGG	3 cut(s)	45, 154, 281
BsmAI	GTCTC	3 cut(s)	36, 101, 376
BsmFI	GGGAC	1 cut(s)	170
BsnI	GGCC	2 cut(s)	89, 296
Bso31I	GGTCTC	2 cut(s)	36, 376
BsoBI	CYCGRG	1 cut(s)	161
Bsp1286I	GDGCHC	1 cut(s)	306
Bsp143I	GATC	2 cut(s)	120, 328
BspACI	CCGC	6 cut(s)	28, 64, 112, 138, 229, 297
BspANI	GGCC	2 cut(s)	89, 296
BspCNI	CTCAG	1 cut(s)	283
BspFNI	CGCG	1 cut(s)	114
BspLI	GGNNCC	3 cut(s)	158, 159, 273
BspMI	ACCTGC	1 cut(s)	394
BspTNI	GGTCTC	2 cut(s)	36, 376
BsrBI	CCGCTC	1 cut(s)	231
BsrFI	RCCGGY	1 cut(s)	85
BssAI	RCCGGY	1 cut(s)	85
BssECI	CCNNGG	2 cut(s)	39, 162
BssMI	GATC	2 cut(s)	120, 328
BssNI	GRCGYC	1 cut(s)	198
BssT1I	CCWWGG	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	269
Bst4CI	ACNGT	2 cut(s)	323, 402
BstACI	GRCGYC	1 cut(s)	198
BstC8I	GCNNGC	1 cut(s)	87
BstDEI	CTNAG	2 cut(s)	150, 291
BstF5I	GGATG	2 cut(s)	174, 411
BstFNI	CGCG	1 cut(s)	114
BstH2I	RGCGCY	1 cut(s)	56
BstHHI	GCGC	2 cut(s)	55, 116
BstKTI	GATC	2 cut(s)	123, 331
BstMAI	GTCTC	3 cut(s)	36, 101, 376
BstMBI	GATC	2 cut(s)	120, 328
BstMWI	GCNNNNNNNGC	3 cut(s)	61, 137, 296
BstNI	CCWGG	1 cut(s)	269
BstSCI	CCNGG	2 cut(s)	45, 267
BstUI	CGCG	1 cut(s)	114
BstV1I	GCAGC	2 cut(s)	42, 180
BstV2I	GAAGAC	1 cut(s)	345
BsuI	GTATCC	1 cut(s)	470
BsuRI	GGCC	2 cut(s)	89, 296
BtsCI	GGATG	2 cut(s)	174, 411
BveI	ACCTGC	1 cut(s)	394
Cac8I	GCNNGC	1 cut(s)	87
CfoI	GCGC	2 cut(s)	55, 116
Cfr10I	RCCGGY	1 cut(s)	85
Cfr13I	GGNCC	2 cut(s)	43, 157
CseI	GACGC	2 cut(s)	160, 187
Csp6I	GTAC	2 cut(s)	22, 36
CviAII	CATG	1 cut(s)	425
CviJI	RGCY	9 cut(s)	70, 85, 89, 109, 272, 290, 296, 304, 436
CviKI_1	RGCY	9 cut(s)	70, 85, 89, 109, 272, 290, 296, 304, 436
CviQI	GTAC	2 cut(s)	22, 36
DdeI	CTNAG	2 cut(s)	150, 291
DpnI	GATC	2 cut(s)	122, 330
DpnII	GATC	2 cut(s)	120, 328
Ecl136II	GAGCTC	1 cut(s)	304
Eco130I	CCWWGG	1 cut(s)	39
Eco24I	GRGCYC	1 cut(s)	306
Eco31I	GGTCTC	2 cut(s)	36, 376
Eco47I	GGWCC	2 cut(s)	43, 157
Eco53kI	GAGCTC	1 cut(s)	304
Eco88I	CYCGRG	1 cut(s)	161
EcoICRI	GAGCTC	1 cut(s)	304
EcoO109I	RGGNCCY	1 cut(s)	157
EcoRII	CCWGG	1 cut(s)	267
EcoT14I	CCWWGG	1 cut(s)	39
EcoT38I	GRGCYC	1 cut(s)	306
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	1 cut(s)	428
FaiI	YATR	2 cut(s)	426, 450
FalI	AAGNNNNNCTT	2 cut(s)	74, 106
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	1 cut(s)	424
FauI	CCCGC	1 cut(s)	145
Fnu4HI	GCNGC	3 cut(s)	56, 169, 297
FokI	GGATG	2 cut(s)	161, 398
FriOI	GRGCYC	1 cut(s)	306
Fsp4HI	GCNGC	3 cut(s)	56, 169, 297
FspBI	CTAG	1 cut(s)	359
GlaI	GCGC	2 cut(s)	54, 115
GluI	GCNGC	3 cut(s)	56, 169, 297
HaeII	RGCGCY	1 cut(s)	56
HaeIII	GGCC	2 cut(s)	89, 296
HapII	CCGG	2 cut(s)	46, 86
HgaI	GACGC	2 cut(s)	160, 187
HhaI	GCGC	2 cut(s)	55, 116
Hin1I	GRCGYC	1 cut(s)	198
Hin1II	CATG	1 cut(s)	428
Hin6I	GCGC	2 cut(s)	53, 114
HinP1I	GCGC	2 cut(s)	53, 114
HincII	GTYRAC	1 cut(s)	405
HindII	GTYRAC	1 cut(s)	405
HinfI	GANTC	1 cut(s)	260
HpaI	GTTAAC	1 cut(s)	405
HpaII	CCGG	2 cut(s)	46, 86
Hpy166II	GTNNAC	1 cut(s)	405
Hpy188III	TCNNGA	3 cut(s)	12, 278, 332
Hpy8I	GTNNAC	1 cut(s)	405
Hpy99I	CGWCG	3 cut(s)	254, 320, 323
HpyAV	CCTTC	1 cut(s)	100
HpyCH4III	ACNGT	2 cut(s)	323, 402
HpyCH4IV	ACGT	3 cut(s)	75, 225, 418
HpyF10VI	GCNNNNNNNGC	3 cut(s)	61, 137, 296
HpyF3I	CTNAG	2 cut(s)	150, 291
HpySE526I	ACGT	3 cut(s)	75, 225, 418
Hsp92I	GRCGYC	1 cut(s)	198
Hsp92II	CATG	1 cut(s)	428
HspAI	GCGC	2 cut(s)	53, 114
KflI	GGGWCCC	1 cut(s)	157
KroI	GCCGGC	1 cut(s)	85
KroNI	GCCGGC	1 cut(s)	87
KspAI	GTTAAC	1 cut(s)	405
Kzo9I	GATC	2 cut(s)	120, 328
LmnI	GCTCC	2 cut(s)	114, 277
LpnPI	CCDG	6 cut(s)	59, 99, 254, 281, 399, 449
Lsp1109I	GCAGC	2 cut(s)	42, 180
MaeI	CTAG	1 cut(s)	359
MaeII	ACGT	3 cut(s)	75, 225, 418
MaeIII	GTNAC	1 cut(s)	393
MalI	GATC	2 cut(s)	122, 330
MbiI	CCGCTC	1 cut(s)	231
MboI	GATC	2 cut(s)	120, 328
MboII	GAAGA	3 cut(s)	27, 347, 350
MhlI	GDGCHC	1 cut(s)	306
MluCI	AATT	1 cut(s)	490
MlyI	GAGTC	1 cut(s)	254
MmeI	TCCRAC	2 cut(s)	231, 439
MnlI	CCTC	7 cut(s)	111, 157, 212, 250, 280, 285, 286
MroNI	GCCGGC	1 cut(s)	85
MseI	TTAA	1 cut(s)	404
MspI	CCGG	2 cut(s)	46, 86
MspR9I	CCNGG	2 cut(s)	47, 269
MvaI	CCWGG	1 cut(s)	269
MvnI	CGCG	1 cut(s)	114
MwoI	GCNNNNNNNGC	3 cut(s)	61, 137, 296
NaeI	GCCGGC	1 cut(s)	87
NciI	CCSGG	1 cut(s)	47
NdeII	GATC	2 cut(s)	120, 328
NgoMIV	GCCGGC	1 cut(s)	85
NlaIII	CATG	1 cut(s)	428
NlaIV	GGNNCC	3 cut(s)	158, 159, 273
NmeAIII	GCCGAG	1 cut(s)	325
PcsI	WCGNNNNNNNCGW	5 cut(s)	255, 312, 324, 339, 398
PdiI	GCCGGC	1 cut(s)	87
PflFI	GACNNNGTC	1 cut(s)	263
PkrI	GCNGC	3 cut(s)	57, 170, 298
PleI	GAGTC	1 cut(s)	254
PpsI	GAGTC	1 cut(s)	254
PpuMI	RGGWCCY	1 cut(s)	157
Psp124BI	GAGCTC	1 cut(s)	306
Psp5II	RGGWCCY	1 cut(s)	157
Psp6I	CCWGG	1 cut(s)	267
PspGI	CCWGG	1 cut(s)	267
PspN4I	GGNNCC	3 cut(s)	158, 159, 273
PspPI	GGNCC	2 cut(s)	43, 157
PspPPI	RGGWCCY	1 cut(s)	157
PsyI	GACNNNGTC	1 cut(s)	263
RsaI	GTAC	2 cut(s)	23, 37
RsaNI	GTAC	2 cut(s)	22, 36
SacI	GAGCTC	1 cut(s)	306
SaqAI	TTAA	1 cut(s)	404
SatI	GCNGC	3 cut(s)	56, 169, 297
Sau3AI	GATC	2 cut(s)	120, 328
Sau96I	GGNCC	2 cut(s)	43, 157
SchI	GAGTC	1 cut(s)	254
ScrFI	CCNGG	2 cut(s)	47, 269
SduI	GDGCHC	1 cut(s)	306
SetI	ASST	9 cut(s)	45, 78, 111, 228, 242, 306, 388, 421, 468
SinI	GGWCC	2 cut(s)	43, 157
Sse9I	AATT	1 cut(s)	490
SsiI	CCGC	6 cut(s)	28, 64, 112, 138, 229, 297
SspMI	CTAG	1 cut(s)	359
SstI	GAGCTC	1 cut(s)	306
StyD4I	CCNGG	2 cut(s)	45, 267
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	2 cut(s)	323, 402
TaiI	ACGT	3 cut(s)	78, 228, 421
TaqI	TCGA	4 cut(s)	123, 252, 306, 333
TasI	AATT	1 cut(s)	490
TatI	WGTACW	1 cut(s)	21
TauI	GCSGC	1 cut(s)	299
Tru1I	TTAA	1 cut(s)	404
Tru9I	TTAA	1 cut(s)	404
TseI	GCWGC	2 cut(s)	55, 168
TspDTI	ATGAA	1 cut(s)	413
TspGWI	ACGGA	1 cut(s)	385
Tth111I	GACNNNGTC	1 cut(s)	263
VpaK11BI	GGWCC	2 cut(s)	43, 157
XcmI	CCANNNNNNNNNTGG	1 cut(s)	46
XspI	CTAG	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.