Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003414

Physical Location & Seq

Genomic Coordinates Reverse (-)

666807 .. 669919

Gene Structure 3113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G02960.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

ATGTGGCGGCGAAGTAACTTACCGGGGAATCCAGATTCCGATCAGAGCATATCTGAGGAAGAAGAAGAAAATGATATTTCGCCGAAGGAGAATGCGAAGGAACAAGAGAGAGGATTACTACTTCAAACAAAGCTCGAAAAACTCATAGGTTGTGGTGAGCTAAATTATGCTAGGGAAACCGGTGATGTAACTCTGGAAGCAACTCTACGGAAGATATCATCCTCTCTTGAAGATGTGGTCGAAGTTCCTGACTCCCCCGAGGAGAGTTATATTTCTTCTTCCAGAAGAACTGGATTAGCATGCATATCTGCTCAGGAAAATGGGTCAGATGATGAGATTACACATGATGAACAAGTGGCAACTTGGTCTGCTATAAGTAAAGAAACCAAGTCACTAATCCATTTGAATGGTGTTGCTTCAGTCGCATCATCCCATCTATCTGGCTTCAGAGCCAAGAAAAGTAGTAATGGTCTCAAAGATCATGGGAGGCCAAAATTTTCATTTAACTCACATACTCATGGAGAAACGTCATCCAAGATAAGTGACATGGCTGAAATCTTTGAGCCTGATGTGGAGGATCAGGCTATAGAAGAGGATCCAATTATTGAATGCCCCAACAGTTTTGATGAAAGATCAGAAAACAGGCAGGGTGTTTCTGTTGCTGAGTCGAGAGAAGTTTTGCACGAGTGCACTAAAGATGCGGTACCCAAGCTTCAAGAAATTCCTCTAGATAAAATTAGACTGATAAAAAGAAGCTCTGAACTGGACAGCAGACATGAAGCAAAAAGTCGGAAATTTACTCATAAGGGAAATTCATCTAACTTCCAAGATAGTGATACTGATGATGAACTTCCTGGACCTATGGATAGTGGATCATCAAGCGATGATGAGCCTAGTTATCAAAGCTCAGTGCCAAACATTTCCAACCAGAAGAAACAATTTGTTGGGGACCGGTTTGATGAAGCAATAAAAGCTTCCTCTTTGAGCAAAGAAGGTCTCTTGTTCGGTTCACCTAAATTATCTGGTGGCTCTAGCCTGTATGGCAAGCTGCAACAGATCATGAAACAAGAAAAAGAGACGGAAATGGAAATCATGAGGAAATTGCAAAGCGGAATCGGAGAAGCAGTCATGTCAAGACACTTGGAGGGAAAGCTTGTCGTCTGCAAATGCTCTGTCATTGACCTCTCTGGGGACTCCCTATTACTCAAGAACACACAAGCTCTTGCGGCAAAAGAAACAGAAACAACAATTATTTTTAGTCCGAAAGTTTGTGCGGATGTTGATATCGAAATAGGGAACTTTATCCGAGTATATGCGCCATGGAAGGAGTTGGAAGTGCAGAAAACCAATGATGTGATTATTTTGTCTTCATATTTCTCAAGTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

462

Amino Acids

51.07

Weight (kDa)

4.88

Isoelectric Point (pI)

58.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02960 AT1G02960 AT1G02960 AT1G02960 AT1G02960 AT1G02960 AT1G02965
fragaria_vesca	FvH4_2g25160 FvH4_2g25160 FvH4_2g25160
malus_domestica	MD03G1283300.v1.1
prunus_persica	Prupe.8G256400_v2.0.a1 Prupe.8G256400_v2.0.a1 Prupe.8G256400_v2.0.a1 Prupe.8G256400_v2.0.a1 Prupe.8G256400_v2.0.a1 Prupe.8G256400_v2.0.a1 Prupe.8G256400_v2.0.a1
pyrus_communis	pycom03g22410
rosa_chinensis	RchiOBHm_Chr6g0293271
rosa_laevigata	RLG00000011962
rosa_multiflora	Rmu_ssc0000162.1_g000034
rosa_roxburghii	Rroxscaffold_7G00174290
rosa_rugosa	Rorug06G0233900 Rorug06G0234000 Rorug06G0234100 Rorug06G0234100 Rorug06G0234100 Rorug06G0234200
rosa_samantha	Rh6AG346900 Rh6AG347000 Rh6BG354300 Rh6CG360800 Rh6DG347300 Rh6DG347400
rosa_wichuraiana	Rw6G030200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	703
AccB1I	GGYRCC	1 cut(s)	703
AciI	CCGC	5 cut(s)	7, 701, 1110, 1226, 1274
AclWI	GGATC	4 cut(s)	585, 590, 603, 880
AcsI	RAATTY	4 cut(s)	494, 720, 794, 811
AcuI	CTGAAG	2 cut(s)	402, 430
AfaI	GTAC	1 cut(s)	705
AfiI	CCNNNNNNNGG	1 cut(s)	1189
AgeI	ACCGGT	2 cut(s)	179, 951
AgsI	TTSAA	5 cut(s)	125, 230, 406, 608, 716
AjnI	CCWGG	1 cut(s)	853
AluBI	AGCT	9 cut(s)	133, 160, 712, 756, 906, 974, 1048, 1153, 1220
AluI	AGCT	9 cut(s)	133, 160, 712, 756, 906, 974, 1048, 1153, 1220
Alw21I	GWGCWC	1 cut(s)	692
Alw26I	GTCTC	3 cut(s)	476, 1001, 1070
Alw44I	GTGCAC	1 cut(s)	688
AlwI	GGATC	4 cut(s)	585, 590, 603, 880
Ama87I	CYCGRG	1 cut(s)	257
AoxI	GGCC	1 cut(s)	488
ApaLI	GTGCAC	1 cut(s)	688
ApeKI	GCWGC	1 cut(s)	1048
ApoI	RAATTY	4 cut(s)	494, 720, 794, 811
ArsI	GACNNNNNNTTYG	2 cut(s)	1158, 1190
AsiGI	ACCGGT	2 cut(s)	179, 951
Asp718I	GGTACC	1 cut(s)	703
AspLEI	GCGC	1 cut(s)	1318
AspS9I	GGNCC	2 cut(s)	857, 949
AsuC2I	CCSGG	1 cut(s)	24
AsuHPI	GGTGA	3 cut(s)	167, 194, 1002
AvaI	CYCGRG	1 cut(s)	257
AvaII	GGWCC	2 cut(s)	857, 949
BaeGI	GKGCMC	1 cut(s)	692
BamHI	GGATCC	1 cut(s)	595
BanI	GGYRCC	1 cut(s)	703
BarI	GAAGNNNNNNTAC	4 cut(s)	189, 221, 696, 728
BauI	CACGAG	1 cut(s)	683
BbsI	GAAGAC	1 cut(s)	1359
Bbv12I	GWGCWC	1 cut(s)	692
BbvI	GCAGC	1 cut(s)	1035
BccI	CCATC	1 cut(s)	441
BciT130I	CCWGG	1 cut(s)	855
BcnI	CCSGG	1 cut(s)	24
BcoDI	GTCTC	3 cut(s)	476, 1001, 1070
BfaI	CTAG	4 cut(s)	171, 728, 894, 1032
BfmI	CTRYAG	1 cut(s)	585
BglI	GCCNNNNNGGC	1 cut(s)	1041
BisI	GCNGC	3 cut(s)	8, 1049, 1227
BlsI	GCNGC	3 cut(s)	9, 1050, 1228
Bme1390I	CCNGG	2 cut(s)	24, 855
Bme18I	GGWCC	2 cut(s)	857, 949
BmeT110I	CYCGRG	1 cut(s)	257
BmgT120I	GGNCC	2 cut(s)	857, 949
BmiI	GGNNCC	3 cut(s)	597, 705, 950
BmrFI	CCNGG	2 cut(s)	24, 855
BmsI	GCATC	2 cut(s)	434, 688
BpiI	GAAGAC	1 cut(s)	1359
Bpu10I	CCTNAGC	1 cut(s)	312
BpuEI	CTTGAG	2 cut(s)	1190, 1363
BpuMI	CCSGG	1 cut(s)	24
BsaBI	GATNNNNATC	1 cut(s)	39
BsaI	GGTCTC	2 cut(s)	476, 1001
BsaJI	CCNNGG	3 cut(s)	23, 258, 1319
BsaWI	WCCGGW	2 cut(s)	179, 951
BsaXI	ACNNNNNCTCC	2 cut(s)	1110, 1140
Bsc4I	CCNNNNNNNGG	1 cut(s)	1189
Bse118I	RCCGGY	2 cut(s)	179, 951
Bse1I	ACTGG	2 cut(s)	295, 768
Bse8I	GATNNNNATC	1 cut(s)	39
BseBI	CCWGG	1 cut(s)	855
BseDI	CCNNGG	3 cut(s)	23, 258, 1319
BseGI	GGATG	4 cut(s)	218, 428, 530, 1282
BseJI	GATNNNNATC	1 cut(s)	39
BseLI	CCNNNNNNNGG	1 cut(s)	1189
BseMII	CTCAG	4 cut(s)	45, 326, 654, 921
BseNI	ACTGG	2 cut(s)	295, 768
BseRI	GAGGAG	1 cut(s)	275
BseSI	GKGCMC	1 cut(s)	692
BseXI	GCAGC	1 cut(s)	1035
BsgI	GTGCAG	1 cut(s)	1358
BshFI	GGCC	1 cut(s)	490
BshNI	GGYRCC	1 cut(s)	703
BshTI	ACCGGT	2 cut(s)	179, 951
BsiHKAI	GWGCWC	1 cut(s)	692
BsiHKCI	CYCGRG	1 cut(s)	257
BsiSI	CCGG	3 cut(s)	23, 180, 952
BslFI	GGGAC	2 cut(s)	962, 1205
BslI	CCNNNNNNNGG	1 cut(s)	1189
BsmAI	GTCTC	3 cut(s)	476, 1001, 1070
BsmBI	CGTCTC	1 cut(s)	1070
BsmFI	GGGAC	2 cut(s)	962, 1205
BsmI	GAATGC	2 cut(s)	97, 614
BsnI	GGCC	1 cut(s)	490
Bso31I	GGTCTC	2 cut(s)	476, 1001
BsoBI	CYCGRG	1 cut(s)	257
Bsp1286I	GDGCHC	1 cut(s)	692
Bsp143I	GATC	7 cut(s)	40, 478, 577, 595, 632, 872, 1056
Bsp19I	CCATGG	1 cut(s)	1319
BspACI	CCGC	5 cut(s)	7, 701, 1110, 1226, 1274
BspANI	GGCC	1 cut(s)	490
BspCNI	CTCAG	4 cut(s)	46, 325, 655, 920
BspHI	TCATGA	2 cut(s)	1059, 1092
BspLI	GGNNCC	3 cut(s)	597, 705, 950
BspPI	GGATC	4 cut(s)	585, 590, 603, 880
BspT107I	GGYRCC	1 cut(s)	703
BspTNI	GGTCTC	2 cut(s)	476, 1001
BsrFI	RCCGGY	2 cut(s)	179, 951
BsrI	ACTGG	2 cut(s)	295, 768
BssAI	RCCGGY	2 cut(s)	179, 951
BssECI	CCNNGG	3 cut(s)	23, 258, 1319
BssMI	GATC	7 cut(s)	40, 478, 577, 595, 632, 872, 1056
BssSI	CACGAG	1 cut(s)	683
BssT1I	CCWWGG	1 cut(s)	1319
Bst2BI	CACGAG	1 cut(s)	683
Bst2UI	CCWGG	1 cut(s)	855
Bst4CI	ACNGT	1 cut(s)	620
Bst6I	CTCTTC	1 cut(s)	585
BstC8I	GCNNGC	2 cut(s)	301, 1046
BstDEI	CTNAG	4 cut(s)	54, 312, 663, 907
BstDSI	CCRYGG	1 cut(s)	1319
BstF5I	GGATG	4 cut(s)	218, 428, 530, 1282
BstHHI	GCGC	1 cut(s)	1318
BstKTI	GATC	7 cut(s)	43, 481, 580, 598, 635, 875, 1059
BstMAI	GTCTC	3 cut(s)	476, 1001, 1070
BstMBI	GATC	7 cut(s)	40, 478, 577, 595, 632, 872, 1056
BstMWI	GCNNNNNNNGC	4 cut(s)	422, 971, 1041, 1226
BstNI	CCWGG	1 cut(s)	855
BstNSI	RCATGY	1 cut(s)	303
BstSCI	CCNGG	2 cut(s)	22, 853
BstSFI	CTRYAG	1 cut(s)	585
BstSLI	GKGCMC	1 cut(s)	692
BstV1I	GCAGC	1 cut(s)	1035
BstV2I	GAAGAC	1 cut(s)	1359
BstX2I	RGATCY	1 cut(s)	595
BstXI	CCANNNNNNTGG	2 cut(s)	407, 440
BstYI	RGATCY	1 cut(s)	595
BsuRI	GGCC	1 cut(s)	490
BtgI	CCRYGG	1 cut(s)	1319
BtgZI	GCGATG	1 cut(s)	897
BtsCI	GGATG	4 cut(s)	218, 428, 530, 1282
BtsIMutI	CAGTG	1 cut(s)	915
Cac8I	GCNNGC	2 cut(s)	301, 1046
CciI	TCATGA	2 cut(s)	1059, 1092
CfoI	GCGC	1 cut(s)	1318
Cfr10I	RCCGGY	2 cut(s)	179, 951
Cfr13I	GGNCC	2 cut(s)	857, 949
Csp6I	GTAC	1 cut(s)	704
CspAI	ACCGGT	2 cut(s)	179, 951
CviQI	GTAC	1 cut(s)	704
DdeI	CTNAG	4 cut(s)	54, 312, 663, 907
DpnI	GATC	7 cut(s)	42, 480, 579, 597, 634, 874, 1058
DpnII	GATC	7 cut(s)	40, 478, 577, 595, 632, 872, 1056
Eam1104I	CTCTTC	1 cut(s)	585
EarI	CTCTTC	1 cut(s)	585
Eco130I	CCWWGG	1 cut(s)	1319
Eco31I	GGTCTC	2 cut(s)	476, 1001
Eco32I	GATATC	2 cut(s)	216, 1285
Eco47I	GGWCC	2 cut(s)	857, 949
Eco57I	CTGAAG	2 cut(s)	402, 430
Eco88I	CYCGRG	1 cut(s)	257
EcoRII	CCWGG	1 cut(s)	853
EcoRV	GATATC	2 cut(s)	216, 1285
EcoT14I	CCWWGG	1 cut(s)	1319
EcoT22I	ATGCAT	1 cut(s)	305
ErhI	CCWWGG	1 cut(s)	1319
Esp3I	CGTCTC	1 cut(s)	1070
FaqI	GGGAC	2 cut(s)	962, 1205
Fnu4HI	GCNGC	3 cut(s)	8, 1049, 1227
FokI	GGATG	4 cut(s)	205, 415, 517, 1289
Fsp4HI	GCNGC	3 cut(s)	8, 1049, 1227
FspBI	CTAG	4 cut(s)	171, 728, 894, 1032
GlaI	GCGC	1 cut(s)	1317
GluI	GCNGC	3 cut(s)	8, 1049, 1227
HaeIII	GGCC	1 cut(s)	490
HapII	CCGG	3 cut(s)	23, 180, 952
HhaI	GCGC	1 cut(s)	1318
Hin6I	GCGC	1 cut(s)	1316
HinP1I	GCGC	1 cut(s)	1316
HindIII	AAGCTT	3 cut(s)	710, 972, 1151
HinfI	GANTC	6 cut(s)	28, 35, 251, 665, 1113, 1193
HpaII	CCGG	3 cut(s)	23, 180, 952
HphI	GGTGA	3 cut(s)	167, 194, 1002
Hpy166II	GTNNAC	2 cut(s)	690, 1010
Hpy8I	GTNNAC	2 cut(s)	690, 1010
HpyAV	CCTTC	4 cut(s)	79, 91, 986, 1318
HpyCH4III	ACNGT	1 cut(s)	620
HpyCH4IV	ACGT	1 cut(s)	527
HpyCH4V	TGCA	7 cut(s)	303, 682, 690, 1051, 1105, 1164, 1339
HpyF10VI	GCNNNNNNNGC	4 cut(s)	422, 971, 1041, 1226
HpyF3I	CTNAG	4 cut(s)	54, 312, 663, 907
HpySE526I	ACGT	1 cut(s)	527
HspAI	GCGC	1 cut(s)	1316
KpnI	GGTACC	1 cut(s)	707
Kzo9I	GATC	7 cut(s)	40, 478, 577, 595, 632, 872, 1056
Lsp1109I	GCAGC	1 cut(s)	1035
LweI	GCATC	2 cut(s)	434, 688
MaeI	CTAG	4 cut(s)	171, 728, 894, 1032
MaeII	ACGT	1 cut(s)	527
MaeIII	GTNAC	4 cut(s)	14, 187, 390, 542
MalI	GATC	7 cut(s)	42, 480, 579, 597, 634, 874, 1058
MboI	GATC	7 cut(s)	40, 478, 577, 595, 632, 872, 1056
MflI	RGATCY	1 cut(s)	595
MhlI	GDGCHC	1 cut(s)	692
MlyI	GAGTC	3 cut(s)	245, 674, 1187
MmeI	TCCRAC	3 cut(s)	770, 948, 1311
Mph1103I	ATGCAT	1 cut(s)	305
MseI	TTAA	1 cut(s)	504
MslI	CAYNNNNRTG	2 cut(s)	405, 516
MspI	CCGG	3 cut(s)	23, 180, 952
MspR9I	CCNGG	2 cut(s)	24, 855
Mva1269I	GAATGC	2 cut(s)	97, 614
MvaI	CCWGG	1 cut(s)	855
MwoI	GCNNNNNNNGC	4 cut(s)	422, 971, 1041, 1226
NciI	CCSGG	1 cut(s)	24
NcoI	CCATGG	1 cut(s)	1319
NdeII	GATC	7 cut(s)	40, 478, 577, 595, 632, 872, 1056
NlaIV	GGNNCC	3 cut(s)	597, 705, 950
NmuCI	GTSAC	2 cut(s)	390, 542
NsiI	ATGCAT	1 cut(s)	305
NspI	RCATGY	1 cut(s)	303
PaeI	GCATGC	1 cut(s)	303
PagI	TCATGA	2 cut(s)	1059, 1092
PctI	GAATGC	2 cut(s)	97, 614
PfeI	GAWTC	3 cut(s)	28, 35, 1113
PfoI	TCCNGGA	1 cut(s)	853
PinAI	ACCGGT	2 cut(s)	179, 951
PkrI	GCNGC	3 cut(s)	9, 1050, 1228
PleI	GAGTC	3 cut(s)	245, 673, 1187
PpsI	GAGTC	3 cut(s)	245, 673, 1187
Psp6I	CCWGG	1 cut(s)	853
PspGI	CCWGG	1 cut(s)	853
PspN4I	GGNNCC	3 cut(s)	597, 705, 950
PspPI	GGNCC	2 cut(s)	857, 949
PsuI	RGATCY	1 cut(s)	595
RsaI	GTAC	1 cut(s)	705
RsaNI	GTAC	1 cut(s)	704
RseI	CAYNNNNRTG	2 cut(s)	405, 516
SaqAI	TTAA	1 cut(s)	504
SatI	GCNGC	3 cut(s)	8, 1049, 1227
Sau3AI	GATC	7 cut(s)	40, 478, 577, 595, 632, 872, 1056
Sau96I	GGNCC	2 cut(s)	857, 949
SchI	GAGTC	3 cut(s)	245, 674, 1187
ScrFI	CCNGG	2 cut(s)	24, 855
SduI	GDGCHC	1 cut(s)	692
SfaNI	GCATC	2 cut(s)	434, 688
SfcI	CTRYAG	1 cut(s)	585
SinI	GGWCC	2 cut(s)	857, 949
SmiMI	CAYNNNNRTG	2 cut(s)	405, 516
SmlI	CTYRAG	2 cut(s)	1205, 1378
SmoI	CTYRAG	2 cut(s)	1205, 1378
SphI	GCATGC	1 cut(s)	303
SsiI	CCGC	5 cut(s)	7, 701, 1110, 1226, 1274
SspMI	CTAG	4 cut(s)	171, 728, 894, 1032
StyD4I	CCNGG	2 cut(s)	22, 853
StyI	CCWWGG	1 cut(s)	1319
TaaI	ACNGT	1 cut(s)	620
TaiI	ACGT	1 cut(s)	530
TaqI	TCGA	4 cut(s)	135, 240, 668, 1287
TauI	GCSGC	2 cut(s)	10, 1229
TfiI	GAWTC	3 cut(s)	28, 35, 1113
Tru1I	TTAA	1 cut(s)	504
Tru9I	TTAA	1 cut(s)	504
TscAI	CASTG	1 cut(s)	915
TseFI	GTSAC	2 cut(s)	390, 542
TseI	GCWGC	1 cut(s)	1048
Tsp45I	GTSAC	2 cut(s)	390, 542
TspDTI	ATGAA	9 cut(s)	363, 489, 642, 792, 804, 861, 975, 1076, 1359
TspGWI	ACGGA	2 cut(s)	223, 1094
TspRI	CASTG	1 cut(s)	915
VneI	GTGCAC	1 cut(s)	688
VpaK11BI	GGWCC	2 cut(s)	857, 949
XapI	RAATTY	4 cut(s)	494, 720, 794, 811
XbaI	TCTAGA	1 cut(s)	727
XceI	RCATGY	1 cut(s)	303
XspI	CTAG	4 cut(s)	171, 728, 894, 1032
Zsp2I	ATGCAT	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.