Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0003414

Physical Location & Seq

Genomic Coordinates Reverse (-)

36335891 .. 36339647

Gene Structure 3757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1283300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

ATGCTTACGCGTCGTTTTCAGACGATTCCAGATTCTGATCAGAGCATTTCCGATGAGGAAGAATCTGACCGAGATTTTCCCAACAATTGCGCTGCGATTGGCGGTTCCGCCAAGAAAAAGGAGGAATTACCACTTTCATCACGGCTGGAAATGCTCAAAGATGCAGGTGCAAGTGTGTATGCCTGCAACTTGGACGATGAGTTGAGCTCTGATGAAGAGGGGAACAACATGCGTGTGAAAGTTTCGGTTACTCTTGGTGCTAAAAAGTTGCAAAAGGATTATGTTCATTGCATTGGAAGTGATAAAGAAGATGAATCATACACATGGTCTGAAGTAAGTAAAGAAGCTGAGGCACTCATGCGATTGAATGAACAAACTTCATGTTCATCACCAAAATCTGATTATTCGAAAGTGAATAAATCGGTCAAAGGAGTGAAAGACAAAGGCAAGCCAAAATTTTCCTTCCGTTTCAAGACTCAAAAGGAAGGGCCCTCTTGCTTTTCTGTATCTAAAAACGAAAGTGATATGTCATTCAAGGTTCAACAAGTGCCTGAAATGTTGAAGGCAACTGAGCCCAGGACTGAAGAATATTTGGATTCTGAGCTTATTGAGGATATTCAAGGAGAAGAGGAAAAACAGTTGGAGATTGTTCCTGTTCACGTTAATGAACTTGGGCATGGATCTATTGAGCAGTCAATGGCAGAGCTTTTAGATGGCCTTCAAGATAAGACATCTATGCTGAGAGGAAGATCTAAAATGTATCGTAGAAAAAGGCGTAAAAGGGCGCAGCCTGTTATGAAGATTGTATCTTCACTTGGAGATAGCGTTATTGACAGTGAAAGCTCCCCTGAGCACTTAGGCCTGGGATCGCCAAGTAATAGTGAGGCCAATGATCAAATTCTGAAGCTTGATAAACCGGAGGTAAAGAGGCAAACACTGGTAGATCGATTTCAAGAAGCTTTGAGTGACAGAGCCCTTGTTGCAGTGCCTAAACCATTAAGAATTGGATTATTTGGGCAACTGCAGCAGGTCGTTCAGAGTGATAAAGAAAGCGATATGGAATTCTTGAACAATATCGAGAATAGAGCTAACCAAAATGAACCAAGCTGCATTGATGTGAAAATTCTTTCAAGATATTTGGATGCGAAATTGACAGTTTGCCACTGCTCATTTGGAAACAATGTAAAGCGCCTCCCATGGCAAGAGAGCCCCAAGAATACGGTGAATGAAGAAACAACATGGAAAATTATCTTCAATCCAAGAGTTTGTGACGATGTTGACCTTGAAGTTGGCAAATGCATTCGTATTCACCCCCCATGGAAGGAGATTCATGTGGGGAATGACAAAAGCATTATCTTATCCACGTATTTCTCCGAGATTTCAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

463

Amino Acids

52.16

Weight (kDa)

5.37

Isoelectric Point (pI)

56.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02960 AT1G02960 AT1G02960 AT1G02960 AT1G02960 AT1G02960 AT1G02965
fragaria_vesca	FvH4_2g25160 FvH4_2g25160 FvH4_2g25160
malus_domestica	MD03G1283300.v1.1
prunus_persica	Prupe.8G256400_v2.0.a1 Prupe.8G256400_v2.0.a1 Prupe.8G256400_v2.0.a1 Prupe.8G256400_v2.0.a1 Prupe.8G256400_v2.0.a1 Prupe.8G256400_v2.0.a1 Prupe.8G256400_v2.0.a1
pyrus_communis	pycom03g22410
rosa_chinensis	RchiOBHm_Chr6g0293271
rosa_laevigata	RLG00000011962
rosa_multiflora	Rmu_ssc0000162.1_g000034
rosa_roxburghii	Rroxscaffold_7G00174290
rosa_rugosa	Rorug06G0233900 Rorug06G0234000 Rorug06G0234100 Rorug06G0234100 Rorug06G0234100 Rorug06G0234200
rosa_samantha	Rh6AG346900 Rh6AG347000 Rh6BG354300 Rh6CG360800 Rh6DG347300 Rh6DG347400
rosa_wichuraiana	Rw6G030200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	155
Acc36I	ACCTGC	2 cut(s)	155, 1018
AccII	CGCG	1 cut(s)	10
AciI	CCGC	2 cut(s)	102, 108
AclWI	GGATC	2 cut(s)	688, 874
AcsI	RAATTY	4 cut(s)	455, 897, 1061, 1122
AcuI	CTGAAG	3 cut(s)	351, 603, 923
AfiI	CCNNNNNNNGG	1 cut(s)	1321
AflIII	ACRYGT	1 cut(s)	8
AjnI	CCWGG	2 cut(s)	575, 861
AluBI	AGCT	9 cut(s)	207, 347, 604, 706, 843, 907, 959, 1088, 1107
AluI	AGCT	9 cut(s)	207, 347, 604, 706, 843, 907, 959, 1088, 1107
Alw21I	GWGCWC	2 cut(s)	209, 855
AlwI	GGATC	2 cut(s)	688, 874
AlwNI	CAGNNNCTG	1 cut(s)	35
AoxI	GGCC	4 cut(s)	488, 715, 859, 885
ApaI	GGGCCC	1 cut(s)	492
ApeKI	GCWGC	4 cut(s)	92, 787, 1024, 1107
ApoI	RAATTY	4 cut(s)	455, 897, 1061, 1122
AspLEI	GCGC	3 cut(s)	92, 787, 1191
AspS9I	GGNCC	2 cut(s)	488, 489
AsuHPI	GGTGA	3 cut(s)	381, 1234, 1301
AsuII	TTCGAA	1 cut(s)	407
BaeGI	GKGCMC	1 cut(s)	492
BanII	GRGCYC	5 cut(s)	209, 492, 576, 976, 1211
Bbv12I	GWGCWC	2 cut(s)	209, 855
BbvCI	CCTCAGC	1 cut(s)	348
BbvI	GCAGC	4 cut(s)	79, 799, 1036, 1094
BccI	CCATC	1 cut(s)	707
BceAI	ACGGC	1 cut(s)	158
BciT130I	CCWGG	2 cut(s)	577, 863
BclI	TGATCA	2 cut(s)	37, 892
BfmI	CTRYAG	1 cut(s)	1022
BfoI	RGCGCY	1 cut(s)	1192
BfuAI	ACCTGC	2 cut(s)	155, 1018
BglII	AGATCT	1 cut(s)	749
BisI	GCNGC	4 cut(s)	93, 788, 1025, 1108
BlsI	GCNGC	4 cut(s)	94, 789, 1026, 1109
Bme1390I	CCNGG	2 cut(s)	577, 863
BmgT120I	GGNCC	2 cut(s)	488, 489
BmiI	GGNNCC	2 cut(s)	106, 490
BmrFI	CCNGG	2 cut(s)	577, 863
BmsI	GCATC	2 cut(s)	151, 1132
BplI	GAGNNNNNCTC	2 cut(s)	191, 223
Bpu10I	CCTNAGC	2 cut(s)	348, 849
Bpu14I	TTCGAA	1 cut(s)	407
Bsa29I	ATCGAT	1 cut(s)	946
BsaAI	YACGTR	1 cut(s)	1365
BsaBI	GATNNNNATC	1 cut(s)	36
BsaJI	CCNNGG	4 cut(s)	575, 862, 1196, 1316
BsaWI	WCCGGW	1 cut(s)	916
BsaXI	ACNNNNNCTCC	2 cut(s)	810, 840
Bsc4I	CCNNNNNNNGG	1 cut(s)	1321
Bse1I	ACTGG	1 cut(s)	942
Bse3DI	GCAATG	1 cut(s)	286
Bse8I	GATNNNNATC	1 cut(s)	36
BseBI	CCWGG	2 cut(s)	577, 863
BseCI	ATCGAT	1 cut(s)	946
BseDI	CCNNGG	4 cut(s)	575, 862, 1196, 1316
BseGI	GGATG	1 cut(s)	1147
BseJI	GATNNNNATC	1 cut(s)	36
BseLI	CCNNNNNNNGG	1 cut(s)	1321
BseMI	GCAATG	1 cut(s)	286
BseMII	CTCAG	5 cut(s)	339, 561, 591, 731, 840
BseNI	ACTGG	1 cut(s)	942
BseSI	GKGCMC	1 cut(s)	492
BseXI	GCAGC	4 cut(s)	79, 799, 1036, 1094
Bsh1236I	CGCG	1 cut(s)	10
BshFI	GGCC	4 cut(s)	490, 717, 861, 887
BshVI	ATCGAT	1 cut(s)	946
BsiHKAI	GWGCWC	2 cut(s)	209, 855
BsiSI	CCGG	1 cut(s)	917
BslI	CCNNNNNNNGG	1 cut(s)	1321
BsmI	GAATGC	1 cut(s)	1299
BsnI	GGCC	4 cut(s)	490, 717, 861, 887
Bsp119I	TTCGAA	1 cut(s)	407
Bsp120I	GGGCCC	1 cut(s)	488
Bsp1286I	GDGCHC	6 cut(s)	209, 492, 576, 855, 976, 1211
Bsp143I	GATC	6 cut(s)	37, 680, 749, 866, 892, 943
Bsp19I	CCATGG	2 cut(s)	1196, 1316
BspACI	CCGC	2 cut(s)	102, 108
BspANI	GGCC	4 cut(s)	490, 717, 861, 887
BspCNI	CTCAG	5 cut(s)	340, 562, 592, 732, 841
BspDI	ATCGAT	1 cut(s)	946
BspFNI	CGCG	1 cut(s)	10
BspLI	GGNNCC	2 cut(s)	106, 490
BspMAI	CTGCAG	1 cut(s)	1026
BspMI	ACCTGC	2 cut(s)	155, 1018
BspPI	GGATC	2 cut(s)	688, 874
BspT104I	TTCGAA	1 cut(s)	407
BsrDI	GCAATG	1 cut(s)	286
BsrI	ACTGG	1 cut(s)	942
BssECI	CCNNGG	4 cut(s)	575, 862, 1196, 1316
BssMI	GATC	6 cut(s)	37, 680, 749, 866, 892, 943
BssT1I	CCWWGG	2 cut(s)	1196, 1316
Bst2UI	CCWGG	2 cut(s)	577, 863
Bst4CI	ACNGT	4 cut(s)	639, 836, 1156, 1222
Bst6I	CTCTTC	2 cut(s)	210, 621
BstBAI	YACGTR	1 cut(s)	1365
BstBI	TTCGAA	1 cut(s)	407
BstC8I	GCNNGC	2 cut(s)	184, 449
BstDEI	CTNAG	6 cut(s)	348, 570, 600, 740, 849, 856
BstDSI	CCRYGG	2 cut(s)	1196, 1316
BstF5I	GGATG	1 cut(s)	1147
BstFNI	CGCG	1 cut(s)	10
BstH2I	RGCGCY	1 cut(s)	1192
BstHHI	GCGC	3 cut(s)	92, 787, 1191
BstKTI	GATC	6 cut(s)	40, 683, 752, 869, 895, 946
BstMBI	GATC	6 cut(s)	37, 680, 749, 866, 892, 943
BstMWI	GCNNNNNNNGC	3 cut(s)	151, 980, 1024
BstNI	CCWGG	2 cut(s)	577, 863
BstNSI	RCATGY	1 cut(s)	232
BstSCI	CCNGG	2 cut(s)	575, 861
BstSFI	CTRYAG	1 cut(s)	1022
BstSLI	GKGCMC	1 cut(s)	492
BstUI	CGCG	1 cut(s)	10
BstV1I	GCAGC	4 cut(s)	79, 799, 1036, 1094
BstX2I	RGATCY	2 cut(s)	680, 749
BstYI	RGATCY	2 cut(s)	680, 749
Bsu15I	ATCGAT	1 cut(s)	946
BsuRI	GGCC	4 cut(s)	490, 717, 861, 887
BsuTUI	ATCGAT	1 cut(s)	946
BtgI	CCRYGG	2 cut(s)	1196, 1316
BtsCI	GGATG	1 cut(s)	1147
BtsI	GCAGTG	2 cut(s)	990, 1162
BtsIMutI	CAGTG	4 cut(s)	841, 935, 990, 1162
BveI	ACCTGC	2 cut(s)	155, 1018
Cac8I	GCNNGC	2 cut(s)	184, 449
CaiI	CAGNNNCTG	1 cut(s)	35
CfoI	GCGC	3 cut(s)	92, 787, 1191
Cfr13I	GGNCC	2 cut(s)	488, 489
ClaI	ATCGAT	1 cut(s)	946
CviAII	CATG	9 cut(s)	229, 324, 358, 381, 677, 1197, 1239, 1317, 1331
DdeI	CTNAG	6 cut(s)	348, 570, 600, 740, 849, 856
DpnI	GATC	6 cut(s)	39, 682, 751, 868, 894, 945
DpnII	GATC	6 cut(s)	37, 680, 749, 866, 892, 943
Eam1104I	CTCTTC	2 cut(s)	210, 621
EarI	CTCTTC	2 cut(s)	210, 621
EciI	GGCGGA	1 cut(s)	97
Ecl136II	GAGCTC	1 cut(s)	207
Eco130I	CCWWGG	2 cut(s)	1196, 1316
Eco147I	AGGCCT	1 cut(s)	861
Eco24I	GRGCYC	5 cut(s)	209, 492, 576, 976, 1211
Eco53kI	GAGCTC	1 cut(s)	207
Eco57I	CTGAAG	3 cut(s)	351, 603, 923
EcoICRI	GAGCTC	1 cut(s)	207
EcoO109I	RGGNCCY	2 cut(s)	488, 489
EcoRI	GAATTC	1 cut(s)	1061
EcoRII	CCWGG	2 cut(s)	575, 861
EcoT14I	CCWWGG	2 cut(s)	1196, 1316
EcoT22I	ATGCAT	1 cut(s)	1301
EcoT38I	GRGCYC	5 cut(s)	209, 492, 576, 976, 1211
ErhI	CCWWGG	2 cut(s)	1196, 1316
FaeI	CATG	9 cut(s)	232, 327, 361, 384, 680, 1200, 1242, 1320, 1334
FatI	CATG	9 cut(s)	228, 323, 357, 380, 676, 1196, 1238, 1316, 1330
FbaI	TGATCA	2 cut(s)	37, 892
Fnu4HI	GCNGC	4 cut(s)	93, 788, 1025, 1108
FokI	GGATG	1 cut(s)	1154
FriOI	GRGCYC	5 cut(s)	209, 492, 576, 976, 1211
Fsp4HI	GCNGC	4 cut(s)	93, 788, 1025, 1108
GlaI	GCGC	3 cut(s)	91, 786, 1190
GluI	GCNGC	4 cut(s)	93, 788, 1025, 1108
HaeII	RGCGCY	1 cut(s)	1192
HaeIII	GGCC	4 cut(s)	490, 717, 861, 887
HapII	CCGG	1 cut(s)	917
HhaI	GCGC	3 cut(s)	92, 787, 1191
Hin1II	CATG	9 cut(s)	232, 327, 361, 384, 680, 1200, 1242, 1320, 1334
Hin6I	GCGC	3 cut(s)	90, 785, 1189
HinP1I	GCGC	3 cut(s)	90, 785, 1189
HincII	GTYRAC	1 cut(s)	1279
HindII	GTYRAC	1 cut(s)	1279
HindIII	AAGCTT	2 cut(s)	905, 957
HinfI	GANTC	7 cut(s)	25, 32, 62, 314, 475, 596, 1327
HpaII	CCGG	1 cut(s)	917
HphI	GGTGA	3 cut(s)	381, 1234, 1301
Hpy166II	GTNNAC	2 cut(s)	658, 1279
Hpy188III	TCNNGA	7 cut(s)	29, 472, 722, 953, 1066, 1078, 1131
Hpy8I	GTNNAC	2 cut(s)	658, 1279
Hpy99I	CGWCG	1 cut(s)	15
HpyAV	CCTTC	5 cut(s)	472, 479, 556, 728, 1315
HpyCH4III	ACNGT	4 cut(s)	639, 836, 1156, 1222
HpyCH4IV	ACGT	2 cut(s)	660, 1364
HpyCH4V	TGCA	9 cut(s)	164, 170, 186, 271, 291, 983, 1024, 1110, 1299
HpyF10VI	GCNNNNNNNGC	3 cut(s)	151, 980, 1024
HpyF3I	CTNAG	6 cut(s)	348, 570, 600, 740, 849, 856
HpySE526I	ACGT	2 cut(s)	660, 1364
Hsp92II	CATG	9 cut(s)	232, 327, 361, 384, 680, 1200, 1242, 1320, 1334
HspAI	GCGC	3 cut(s)	90, 785, 1189
Ksp22I	TGATCA	2 cut(s)	37, 892
Kzo9I	GATC	6 cut(s)	37, 680, 749, 866, 892, 943
LmnI	GCTCC	1 cut(s)	848
Lsp1109I	GCAGC	4 cut(s)	79, 799, 1036, 1094
LweI	GCATC	2 cut(s)	151, 1132
MaeII	ACGT	2 cut(s)	660, 1364
MaeIII	GTNAC	3 cut(s)	247, 965, 1268
MalI	GATC	6 cut(s)	39, 682, 751, 868, 894, 945
MboI	GATC	6 cut(s)	37, 680, 749, 866, 892, 943
MfeI	CAATTG	1 cut(s)	85
MflI	RGATCY	2 cut(s)	680, 749
MhlI	GDGCHC	6 cut(s)	209, 492, 576, 855, 976, 1211
MluI	ACGCGT	1 cut(s)	8
MlyI	GAGTC	1 cut(s)	469
MmeI	TCCRAC	1 cut(s)	621
Mph1103I	ATGCAT	1 cut(s)	1301
MseI	TTAA	2 cut(s)	663, 998
MslI	CAYNNNNRTG	4 cut(s)	233, 322, 663, 1115
MspI	CCGG	1 cut(s)	917
MspR9I	CCNGG	2 cut(s)	577, 863
MunI	CAATTG	1 cut(s)	85
Mva1269I	GAATGC	1 cut(s)	1299
MvaI	CCWGG	2 cut(s)	577, 863
MvnI	CGCG	1 cut(s)	10
MwoI	GCNNNNNNNGC	3 cut(s)	151, 980, 1024
NcoI	CCATGG	2 cut(s)	1196, 1316
NdeII	GATC	6 cut(s)	37, 680, 749, 866, 892, 943
NlaIII	CATG	9 cut(s)	232, 327, 361, 384, 680, 1200, 1242, 1320, 1334
NlaIV	GGNNCC	2 cut(s)	106, 490
NmuCI	GTSAC	2 cut(s)	965, 1268
NsiI	ATGCAT	1 cut(s)	1301
NspI	RCATGY	1 cut(s)	232
NspV	TTCGAA	1 cut(s)	407
PaqCI	CACCTGC	1 cut(s)	155
PceI	AGGCCT	1 cut(s)	861
PctI	GAATGC	1 cut(s)	1299
PfeI	GAWTC	6 cut(s)	25, 32, 62, 314, 596, 1327
PkrI	GCNGC	4 cut(s)	94, 789, 1026, 1109
PleI	GAGTC	1 cut(s)	469
PpsI	GAGTC	1 cut(s)	469
Ppu21I	YACGTR	1 cut(s)	1365
Psp124BI	GAGCTC	1 cut(s)	209
Psp6I	CCWGG	2 cut(s)	575, 861
PspGI	CCWGG	2 cut(s)	575, 861
PspN4I	GGNNCC	2 cut(s)	106, 490
PspOMI	GGGCCC	1 cut(s)	488
PspPI	GGNCC	2 cut(s)	488, 489
PstI	CTGCAG	1 cut(s)	1026
PstNI	CAGNNNCTG	1 cut(s)	35
PsuI	RGATCY	2 cut(s)	680, 749
RseI	CAYNNNNRTG	4 cut(s)	233, 322, 663, 1115
SacI	GAGCTC	1 cut(s)	209
SaqAI	TTAA	2 cut(s)	663, 998
SatI	GCNGC	4 cut(s)	93, 788, 1025, 1108
Sau3AI	GATC	6 cut(s)	37, 680, 749, 866, 892, 943
Sau96I	GGNCC	2 cut(s)	488, 489
SchI	GAGTC	1 cut(s)	469
ScrFI	CCNGG	2 cut(s)	577, 863
SduI	GDGCHC	6 cut(s)	209, 492, 576, 855, 976, 1211
SfaNI	GCATC	2 cut(s)	151, 1132
SfcI	CTRYAG	1 cut(s)	1022
SfuI	TTCGAA	1 cut(s)	407
SmiMI	CAYNNNNRTG	4 cut(s)	233, 322, 663, 1115
SseBI	AGGCCT	1 cut(s)	861
SsiI	CCGC	2 cut(s)	102, 108
SspI	AATATT	1 cut(s)	590
SstI	GAGCTC	1 cut(s)	209
StuI	AGGCCT	1 cut(s)	861
StyD4I	CCNGG	2 cut(s)	575, 861
StyI	CCWWGG	2 cut(s)	1196, 1316
TaaI	ACNGT	4 cut(s)	639, 836, 1156, 1222
TaiI	ACGT	2 cut(s)	663, 1367
TaqI	TCGA	3 cut(s)	407, 946, 1077
TaqII	GACCGA	2 cut(s)	84, 412
TfiI	GAWTC	6 cut(s)	25, 32, 62, 314, 596, 1327
Tru1I	TTAA	2 cut(s)	663, 998
Tru9I	TTAA	2 cut(s)	663, 998
TscAI	CASTG	4 cut(s)	841, 942, 990, 1169
TseFI	GTSAC	2 cut(s)	965, 1268
TseI	GCWGC	4 cut(s)	92, 787, 1024, 1107
Tsp45I	GTSAC	2 cut(s)	965, 1268
TspGWI	ACGGA	1 cut(s)	455
TspRI	CASTG	4 cut(s)	841, 942, 990, 1169
XapI	RAATTY	4 cut(s)	455, 897, 1061, 1122
XceI	RCATGY	1 cut(s)	232
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1169
Zsp2I	ATGCAT	1 cut(s)	1301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.