Rh6DG347400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0003414
Physical Location & Seq
Forward (+)
54927408 .. 54928099
692 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG347400.1

Sequence Viewer

Length: 339 bp
ATGCTTGTACCTGTTGCTAATCTTCTTGTTTCTTATTTTACCTCAGATTACCCAAACTGCATGGATGTGAAGATTCTTTCAAAATACCTGGATGCAAAGCTTACCGTGTGTCACTGCTCCTTCGGTAATAACTCAAAGCGCCTCCCATCGCCAGAGGTCTGCGAAGAAATGGTTGATGAAGGACCGGAAGGGACTATTATTTTCAATCCACGAGTTTGCAATGATATTGACCTTGATATTGGGAAATGGATTCGTATACACCCTCCATGGAGGGAGATCCGTGTCGGCACTGCTCAAAACATAATCCTGTCGACATATTTCTCTGAAATTTCAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.72

Weight (kDa)

5.02

Isoelectric Point (pI)

43.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 256, 311
AclWI GGATC 1 cut(s) 271
AcsI RAATTY 1 cut(s) 327
AfaI GTAC 1 cut(s) 9
AgsI TTSAA 3 cut(s) 81, 205, 333
AjnI CCWGG 1 cut(s) 87
AluBI AGCT 1 cut(s) 100
AluI AGCT 1 cut(s) 100
AlwI GGATC 1 cut(s) 271
ApoI RAATTY 1 cut(s) 327
AspLEI GCGC 1 cut(s) 141
AspS9I GGNCC 1 cut(s) 182
AvaII GGWCC 1 cut(s) 182
BauI CACGAG 1 cut(s) 210
BccI CCATC 1 cut(s) 154
BciT130I CCWGG 1 cut(s) 89
BfoI RGCGCY 1 cut(s) 142
Bme1390I CCNGG 1 cut(s) 89
Bme18I GGWCC 1 cut(s) 182
BmgT120I GGNCC 1 cut(s) 182
BmrFI CCNGG 1 cut(s) 89
BmsI GCATC 1 cut(s) 82
BsaJI CCNNGG 1 cut(s) 266
BsaWI WCCGGW 1 cut(s) 184
Bse3DI GCAATG 1 cut(s) 226
BseBI CCWGG 1 cut(s) 89
BseDI CCNNGG 1 cut(s) 266
BseGI GGATG 2 cut(s) 70, 97
BseMI GCAATG 1 cut(s) 226
BseMII CTCAG 1 cut(s) 57
BsiSI CCGG 1 cut(s) 185
BslFI GGGAC 1 cut(s) 205
BsmFI GGGAC 1 cut(s) 205
Bsp143I GATC 1 cut(s) 276
Bsp19I CCATGG 1 cut(s) 266
BspCNI CTCAG 1 cut(s) 56
BspPI GGATC 1 cut(s) 271
BsrDI GCAATG 1 cut(s) 226
BssECI CCNNGG 1 cut(s) 266
BssMI GATC 1 cut(s) 276
BssNAI GTATAC 1 cut(s) 257
BssSI CACGAG 1 cut(s) 210
BssT1I CCWWGG 1 cut(s) 266
Bst1107I GTATAC 1 cut(s) 257
Bst2BI CACGAG 1 cut(s) 210
Bst2UI CCWGG 1 cut(s) 89
Bst4CI ACNGT 1 cut(s) 106
BstDEI CTNAG 1 cut(s) 43
BstDSI CCRYGG 1 cut(s) 266
BstF5I GGATG 2 cut(s) 70, 97
BstH2I RGCGCY 1 cut(s) 142
BstHHI GCGC 1 cut(s) 141
BstKTI GATC 1 cut(s) 279
BstMBI GATC 1 cut(s) 276
BstNI CCWGG 1 cut(s) 89
BstSCI CCNGG 1 cut(s) 87
BstX2I RGATCY 1 cut(s) 276
BstYI RGATCY 1 cut(s) 276
BstZ17I GTATAC 1 cut(s) 257
BtgI CCRYGG 1 cut(s) 266
BtgZI GCGATG 1 cut(s) 132
BtsCI GGATG 2 cut(s) 70, 97
BtsI GCAGTG 2 cut(s) 112, 288
BtsIMutI CAGTG 2 cut(s) 112, 288
CfoI GCGC 1 cut(s) 141
Cfr13I GGNCC 1 cut(s) 182
Csp6I GTAC 1 cut(s) 8
CviAII CATG 2 cut(s) 61, 267
CviJI RGCY 1 cut(s) 100
CviKI_1 RGCY 1 cut(s) 100
CviQI GTAC 1 cut(s) 8
DdeI CTNAG 1 cut(s) 43
DpnI GATC 1 cut(s) 278
DpnII GATC 1 cut(s) 276
Eco130I CCWWGG 1 cut(s) 266
Eco47I GGWCC 1 cut(s) 182
EcoRII CCWGG 1 cut(s) 87
EcoT14I CCWWGG 1 cut(s) 266
ErhI CCWWGG 1 cut(s) 266
FaeI CATG 2 cut(s) 64, 270
FaiI YATR 5 cut(s) 62, 257, 268, 302, 316
FaqI GGGAC 1 cut(s) 205
FatI CATG 2 cut(s) 60, 266
FblI GTMKAC 2 cut(s) 256, 311
FokI GGATG 2 cut(s) 77, 104
GlaI GCGC 1 cut(s) 140
HaeII RGCGCY 1 cut(s) 142
HapII CCGG 1 cut(s) 185
HhaI GCGC 1 cut(s) 141
Hin1II CATG 2 cut(s) 64, 270
Hin6I GCGC 1 cut(s) 139
HinP1I GCGC 1 cut(s) 139
HincII GTYRAC 1 cut(s) 312
HindII GTYRAC 1 cut(s) 312
HindIII AAGCTT 1 cut(s) 98
HinfI GANTC 2 cut(s) 73, 250
HpaII CCGG 1 cut(s) 185
Hpy166II GTNNAC 2 cut(s) 257, 312
Hpy188I TCNGA 2 cut(s) 46, 325
Hpy8I GTNNAC 2 cut(s) 257, 312
HpyAV CCTTC 3 cut(s) 130, 173, 182
HpyCH4III ACNGT 1 cut(s) 106
HpyCH4V TGCA 3 cut(s) 60, 95, 219
HpyF3I CTNAG 1 cut(s) 43
Hsp92II CATG 2 cut(s) 64, 270
HspAI GCGC 1 cut(s) 139
Kzo9I GATC 1 cut(s) 276
LmnI GCTCC 1 cut(s) 122
LpnPI CCDG 6 cut(s) 24, 74, 101, 165, 198, 320
LweI GCATC 1 cut(s) 82
MaeIII GTNAC 1 cut(s) 110
MalI GATC 1 cut(s) 278
MboI GATC 1 cut(s) 276
MboII GAAGA 3 cut(s) 14, 82, 176
MflI RGATCY 1 cut(s) 276
MluCI AATT 1 cut(s) 327
MnlI CCTC 5 cut(s) 52, 148, 152, 264, 273
MslI CAYNNNNRTG 1 cut(s) 65
MspI CCGG 1 cut(s) 185
MspR9I CCNGG 1 cut(s) 89
MvaI CCWGG 1 cut(s) 89
NcoI CCATGG 1 cut(s) 266
NdeII GATC 1 cut(s) 276
NlaIII CATG 2 cut(s) 64, 270
NmuCI GTSAC 1 cut(s) 110
PfeI GAWTC 2 cut(s) 73, 250
Psp6I CCWGG 1 cut(s) 87
PspGI CCWGG 1 cut(s) 87
PspPI GGNCC 1 cut(s) 182
PsuI RGATCY 1 cut(s) 276
RsaI GTAC 1 cut(s) 9
RsaNI GTAC 1 cut(s) 8
RseI CAYNNNNRTG 1 cut(s) 65
SalI GTCGAC 1 cut(s) 310
Sau3AI GATC 1 cut(s) 276
Sau96I GGNCC 1 cut(s) 182
ScrFI CCNGG 1 cut(s) 89
SetI ASST 6 cut(s) 13, 44, 90, 102, 159, 234
SfaNI GCATC 1 cut(s) 82
SinI GGWCC 1 cut(s) 182
SmiMI CAYNNNNRTG 1 cut(s) 65
Sse9I AATT 1 cut(s) 327
StyD4I CCNGG 1 cut(s) 87
StyI CCWWGG 1 cut(s) 266
TaaI ACNGT 1 cut(s) 106
TaqI TCGA 1 cut(s) 311
TasI AATT 1 cut(s) 327
TfiI GAWTC 2 cut(s) 73, 250
TscAI CASTG 2 cut(s) 119, 295
TseFI GTSAC 1 cut(s) 110
Tsp45I GTSAC 1 cut(s) 110
TspDTI ATGAA 1 cut(s) 192
TspGWI ACGGA 1 cut(s) 269
TspRI CASTG 2 cut(s) 119, 295
VpaK11BI GGWCC 1 cut(s) 182
XapI RAATTY 1 cut(s) 327
XmiI GTMKAC 2 cut(s) 256, 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.