Rorug06G0234000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0003414
Physical Location & Seq
Reverse (-)
37642652 .. 37643471
820 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0234000.1

Sequence Viewer

Length: 480 bp
ATGTGTACCCTTCTTCAAAGATTTATAAATGAGTATCGACTTGATAAGGAGCGTTTCTCGGTGTCTGTATTTGTTATGTTCATAATCAGTCGTAGCAAAGGAAAGGCTATTTCTCTCAGGCTACCTCCATGTGCTTCAGGAGATGTCTTGAAATATGCTGCAGCTAAGTGTCCTGCCCTAAAGGAACTGATCTCCATTCACTGCAAGAACTTGCGTCGTTTGAGTGTGGCTAATAATGCAGACATTGATAAAGATAAAGCAATGGCAATTGTTAGCTTGCTGCCTAAGCTTAAGCAATTGATCTTGAAGAGGGCAAATATTGATCGGGGTGCTCTTGTGACGCTACTGCAGGGCTGCAACGAGCTTGTGCATTTGGATGTCAACCATTGTATAGGTTTTGATGAGGGAGATGAAGAAATAGCAAAGCTTGCTTCTCATGTTGCTAATTTCCGCTCTCGGGGTTCTATTCGATTATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

17.73

Weight (kDa)

9.48

Isoelectric Point (pI)

38.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 66 - 130 6.4e-06 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 26
AccBSI CCGCTC 1 cut(s) 453
AciI CCGC 1 cut(s) 451
AcuI CTGAAG 1 cut(s) 120
AfaI GTAC 1 cut(s) 7
AfiI CCNNNNNNNGG 1 cut(s) 457
AflII CTTAAG 1 cut(s) 290
AgsI TTSAA 3 cut(s) 17, 151, 307
AluBI AGCT 5 cut(s) 164, 276, 289, 364, 427
AluI AGCT 5 cut(s) 164, 276, 289, 364, 427
Alw21I GWGCWC 1 cut(s) 334
Ama87I CYCGRG 1 cut(s) 456
ApeKI GCWGC 4 cut(s) 158, 161, 280, 354
AvaI CYCGRG 1 cut(s) 456
Bbv12I GWGCWC 1 cut(s) 334
BbvI GCAGC 4 cut(s) 145, 173, 267, 341
BfmI CTRYAG 2 cut(s) 159, 347
BfrI CTTAAG 1 cut(s) 290
BisI GCNGC 4 cut(s) 159, 162, 281, 355
BlsI GCNGC 4 cut(s) 160, 163, 282, 356
BmeT110I CYCGRG 1 cut(s) 456
BplI GAGNNNNNCTC 2 cut(s) 41, 73
Bpu10I CCTNAGC 1 cut(s) 285
Bsc4I CCNNNNNNNGG 1 cut(s) 457
Bse3DI GCAATG 1 cut(s) 267
BseGI GGATG 1 cut(s) 382
BseLI CCNNNNNNNGG 1 cut(s) 457
BseMI GCAATG 1 cut(s) 267
BseMII CTCAG 1 cut(s) 130
BseXI GCAGC 4 cut(s) 145, 173, 267, 341
BsiHKAI GWGCWC 1 cut(s) 334
BsiHKCI CYCGRG 1 cut(s) 456
BslI CCNNNNNNNGG 1 cut(s) 457
BsoBI CYCGRG 1 cut(s) 456
Bsp1286I GDGCHC 1 cut(s) 334
Bsp143I GATC 3 cut(s) 189, 300, 322
BspACI CCGC 1 cut(s) 451
BspCNI CTCAG 1 cut(s) 129
BspMAI CTGCAG 2 cut(s) 163, 351
BspTI CTTAAG 1 cut(s) 290
BsrBI CCGCTC 1 cut(s) 453
BsrDI GCAATG 1 cut(s) 267
BssMI GATC 3 cut(s) 189, 300, 322
Bst6I CTCTTC 1 cut(s) 302
BstAFI CTTAAG 1 cut(s) 290
BstAPI GCANNNNNTGC 1 cut(s) 428
BstC8I GCNNGC 2 cut(s) 278, 429
BstDEI CTNAG 3 cut(s) 116, 165, 285
BstF5I GGATG 1 cut(s) 382
BstKTI GATC 3 cut(s) 192, 303, 325
BstMBI GATC 3 cut(s) 189, 300, 322
BstMWI GCNNNNNNNGC 3 cut(s) 236, 286, 428
BstSFI CTRYAG 2 cut(s) 159, 347
BstV1I GCAGC 4 cut(s) 145, 173, 267, 341
BtsCI GGATG 1 cut(s) 382
BtsI GCAGTG 1 cut(s) 199
BtsIMutI CAGTG 1 cut(s) 199
Cac8I GCNNGC 2 cut(s) 278, 429
CseI GACGC 2 cut(s) 203, 349
Csp6I GTAC 1 cut(s) 6
CviAII CATG 2 cut(s) 129, 437
CviJI RGCY 9 cut(s) 107, 121, 164, 230, 276, 289, 354, 364, 427
CviKI_1 RGCY 9 cut(s) 107, 121, 164, 230, 276, 289, 354, 364, 427
CviQI GTAC 1 cut(s) 6
DdeI CTNAG 3 cut(s) 116, 165, 285
DpnI GATC 3 cut(s) 191, 302, 324
DpnII GATC 3 cut(s) 189, 300, 322
Eam1104I CTCTTC 1 cut(s) 302
EarI CTCTTC 1 cut(s) 302
Eco57I CTGAAG 1 cut(s) 120
Eco88I CYCGRG 1 cut(s) 456
FaeI CATG 2 cut(s) 132, 440
FaiI YATR 8 cut(s) 26, 77, 83, 130, 156, 392, 438, 478
FatI CATG 2 cut(s) 128, 436
Fnu4HI GCNGC 4 cut(s) 159, 162, 281, 355
FokI GGATG 1 cut(s) 389
Fsp4HI GCNGC 4 cut(s) 159, 162, 281, 355
GluI GCNGC 4 cut(s) 159, 162, 281, 355
HgaI GACGC 2 cut(s) 203, 349
Hin1II CATG 2 cut(s) 132, 440
HincII GTYRAC 1 cut(s) 382
HindII GTYRAC 1 cut(s) 382
HindIII AAGCTT 2 cut(s) 287, 425
Hpy166II GTNNAC 2 cut(s) 6, 382
Hpy188III TCNNGA 3 cut(s) 138, 148, 304
Hpy8I GTNNAC 2 cut(s) 6, 382
Hpy99I CGWCG 1 cut(s) 219
HpyAV CCTTC 1 cut(s) 20
HpyCH4V TGCA 6 cut(s) 161, 204, 239, 349, 357, 370
HpyF10VI GCNNNNNNNGC 3 cut(s) 236, 286, 428
HpyF3I CTNAG 3 cut(s) 116, 165, 285
Hsp92II CATG 2 cut(s) 132, 440
Kzo9I GATC 3 cut(s) 189, 300, 322
LmnI GCTCC 1 cut(s) 49
LpnPI CCDG 4 cut(s) 103, 123, 186, 335
Lsp1109I GCAGC 4 cut(s) 145, 173, 267, 341
MaeIII GTNAC 1 cut(s) 337
MalI GATC 3 cut(s) 191, 302, 324
MbiI CCGCTC 1 cut(s) 453
MboI GATC 3 cut(s) 189, 300, 322
MboII GAAGA 3 cut(s) 5, 319, 425
MfeI CAATTG 2 cut(s) 267, 296
MhlI GDGCHC 1 cut(s) 334
MluCI AATT 3 cut(s) 267, 296, 445
MnlI CCTC 3 cut(s) 135, 303, 397
MseI TTAA 1 cut(s) 291
MslI CAYNNNNRTG 1 cut(s) 375
MspCI CTTAAG 1 cut(s) 290
MunI CAATTG 2 cut(s) 267, 296
MwoI GCNNNNNNNGC 3 cut(s) 236, 286, 428
NdeII GATC 3 cut(s) 189, 300, 322
NlaIII CATG 2 cut(s) 132, 440
NmuCI GTSAC 1 cut(s) 337
PkrI GCNGC 4 cut(s) 160, 163, 282, 356
PsiI TTATAA 1 cut(s) 26
PstI CTGCAG 2 cut(s) 163, 351
RsaI GTAC 1 cut(s) 7
RsaNI GTAC 1 cut(s) 6
RseI CAYNNNNRTG 1 cut(s) 375
SaqAI TTAA 1 cut(s) 291
SatI GCNGC 4 cut(s) 159, 162, 281, 355
Sau3AI GATC 3 cut(s) 189, 300, 322
SduI GDGCHC 1 cut(s) 334
SetI ASST 7 cut(s) 127, 166, 278, 291, 366, 397, 429
SfcI CTRYAG 2 cut(s) 159, 347
SmiMI CAYNNNNRTG 1 cut(s) 375
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
Sse9I AATT 3 cut(s) 267, 296, 445
SsiI CCGC 1 cut(s) 451
SspI AATATT 1 cut(s) 319
TaqI TCGA 2 cut(s) 37, 469
TasI AATT 3 cut(s) 267, 296, 445
Tru1I TTAA 1 cut(s) 291
Tru9I TTAA 1 cut(s) 291
TscAI CASTG 1 cut(s) 206
TseFI GTSAC 1 cut(s) 337
TseI GCWGC 4 cut(s) 158, 161, 280, 354
Tsp45I GTSAC 1 cut(s) 337
TspDTI ATGAA 2 cut(s) 70, 426
TspRI CASTG 1 cut(s) 206
Vha464I CTTAAG 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.