Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003414

Physical Location & Seq

Genomic Coordinates Reverse (-)

37653789 .. 37654738

Gene Structure 950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0234200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGAGCACGCATCGTCTTCTTCCGGAAATGGAGGCACAACTGGGCAGTTTTGGAACAAGGTTTGGAGGTCAAATGTTCCCCCTAAGGTCAAATCTTTTATCTGGAGGCTTTGTAGAGAAATTCTCCCAACAAGGACAGCGCTATCACGTAAGGTTTCTCTTACTATGCTAGAGTGTGCTTTCTGTGAAAGGGACGTAGAGACTTGCATGCATGTGTTTCGTGATTGCCCAATTACATGTAGCTTTTGGGCCCACAACCCCATCCACTTAAAGCTTCGGTCTTTCCCAGCCACATGTGTGTTTGATTGGATTATTGCTATTATGGAGTCTCTTTCTCAGCATGAAATTGAGGTTTTCTTTGTGTCTTTATGGGCCATATGGTGTGAGAGAAACAAGGTGGTATGGGAAGGTGGGGATTGTAACCCAATACACATGTCTGTTTGGGCGTTGAAGCTTCTGGAAGATTATCAGCGAATTCATGTCAAGTCTGCGAAGCAGGGGAGACGGCGTCCTCCGGCTAAGTGGAGCTGTCCTCCAAGGGGAAGACTGAAAATCAATGTGGACGGGGCCTATTGTGCTTCTAGGGGCCATGGAGGAGTGGGGGTAATTGCTAGGGATGAGGAGGGACGTTGTGCTGCAGCCTTGGCAAGACATATACCATATGCACGGTCTGCTTTGCATATGGAGGCTGAAGCATTGCGTGCTGGTCTTCTTATAGCCATACATGAACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

244

Amino Acids

27.69

Weight (kDa)

9.07

Isoelectric Point (pI)

53.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	13 - 83	9.9e-16	zinc-binding in reverse transcriptase
RVT_3	PF13456	186 - 241	1.4e-06	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02960 AT1G02960 AT1G02960 AT1G02960 AT1G02960 AT1G02960 AT1G02965
fragaria_vesca	FvH4_2g25160 FvH4_2g25160 FvH4_2g25160
malus_domestica	MD03G1283300.v1.1
prunus_persica	Prupe.8G256400_v2.0.a1 Prupe.8G256400_v2.0.a1 Prupe.8G256400_v2.0.a1 Prupe.8G256400_v2.0.a1 Prupe.8G256400_v2.0.a1 Prupe.8G256400_v2.0.a1 Prupe.8G256400_v2.0.a1
pyrus_communis	pycom03g22410
rosa_chinensis	RchiOBHm_Chr6g0293271
rosa_laevigata	RLG00000011962
rosa_multiflora	Rmu_ssc0000162.1_g000034
rosa_roxburghii	Rroxscaffold_7G00174290
rosa_rugosa	Rorug06G0233900 Rorug06G0234000 Rorug06G0234100 Rorug06G0234100 Rorug06G0234100 Rorug06G0234200
rosa_samantha	Rh6AG346900 Rh6AG347000 Rh6BG354300 Rh6CG360800 Rh6DG347300 Rh6DG347400
rosa_wichuraiana	Rw6G030200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	23
AcsI	RAATTY	2 cut(s)	120, 474
AcuI	CTGAAG	1 cut(s)	711
AcyI	GRCGYC	1 cut(s)	508
AfeI	AGCGCT	1 cut(s)	141
AfiI	CCNNNNNNNGG	1 cut(s)	539
AflIII	ACRYGT	3 cut(s)	236, 293, 432
AgsI	TTSAA	1 cut(s)	451
AleI	CACNNNNGTG	1 cut(s)	296
AluBI	AGCT	4 cut(s)	243, 274, 454, 528
AluI	AGCT	4 cut(s)	243, 274, 454, 528
Alw21I	GWGCWC	1 cut(s)	9
Alw26I	GTCTC	3 cut(s)	194, 333, 496
Aor13HI	TCCGGA	1 cut(s)	23
Aor51HI	AGCGCT	1 cut(s)	141
AoxI	GGCC	4 cut(s)	249, 372, 567, 586
ApaI	GGGCCC	1 cut(s)	253
ApeKI	GCWGC	2 cut(s)	635, 638
ApoI	RAATTY	2 cut(s)	120, 474
AspLEI	GCGC	1 cut(s)	142
AspS9I	GGNCC	5 cut(s)	249, 250, 372, 567, 586
AxyI	CCTNAGG	1 cut(s)	84
BaeGI	GKGCMC	1 cut(s)	253
BanII	GRGCYC	1 cut(s)	253
BbsI	GAAGAC	3 cut(s)	9, 550, 701
Bbv12I	GWGCWC	1 cut(s)	9
BbvI	GCAGC	2 cut(s)	622, 650
BccI	CCATC	1 cut(s)	269
BceAI	ACGGC	1 cut(s)	521
BcgI	CGANNNNNNTGC	2 cut(s)	200, 234
BcoDI	GTCTC	3 cut(s)	194, 333, 496
BfaI	CTAG	3 cut(s)	170, 582, 612
BfmI	CTRYAG	1 cut(s)	636
BfoI	RGCGCY	1 cut(s)	143
BisI	GCNGC	2 cut(s)	636, 639
BlsI	GCNGC	2 cut(s)	637, 640
BmgT120I	GGNCC	5 cut(s)	249, 250, 372, 567, 586
BmiI	GGNNCC	3 cut(s)	251, 568, 587
BmrI	ACTGGG	1 cut(s)	51
BmsI	GCATC	1 cut(s)	20
BmuI	ACTGGG	1 cut(s)	51
BpiI	GAAGAC	3 cut(s)	9, 550, 701
BplI	GAGNNNNNCTC	4 cut(s)	108, 140, 517, 549
BpmI	CTGGAG	1 cut(s)	124
BsaAI	YACGTR	1 cut(s)	149
BsaHI	GRCGYC	1 cut(s)	508
BsaJI	CCNNGG	3 cut(s)	536, 589, 642
BsaWI	WCCGGW	1 cut(s)	23
BsaXI	ACNNNNNCTCC	6 cut(s)	97, 127, 493, 523, 588, 618
Bsc4I	CCNNNNNNNGG	1 cut(s)	539
Bse1I	ACTGG	1 cut(s)	46
Bse21I	CCTNAGG	1 cut(s)	84
Bse3DI	GCAATG	1 cut(s)	695
BseAI	TCCGGA	1 cut(s)	23
BseDI	CCNNGG	3 cut(s)	536, 589, 642
BseGI	GGATG	2 cut(s)	261, 622
BseLI	CCNNNNNNNGG	1 cut(s)	539
BseMI	GCAATG	1 cut(s)	695
BseMII	CTCAG	1 cut(s)	350
BseNI	ACTGG	1 cut(s)	46
BseRI	GAGGAG	2 cut(s)	609, 635
BseSI	GKGCMC	1 cut(s)	253
BseXI	GCAGC	2 cut(s)	622, 650
BseYI	CCCAGC	1 cut(s)	286
BshFI	GGCC	4 cut(s)	251, 374, 569, 588
BsiHKAI	GWGCWC	1 cut(s)	9
BsiSI	CCGG	2 cut(s)	24, 515
BslFI	GGGAC	2 cut(s)	206, 639
BslI	CCNNNNNNNGG	1 cut(s)	539
BsmAI	GTCTC	3 cut(s)	194, 333, 496
BsmBI	CGTCTC	1 cut(s)	496
BsmFI	GGGAC	2 cut(s)	206, 639
BsnI	GGCC	4 cut(s)	251, 374, 569, 588
Bsp120I	GGGCCC	1 cut(s)	249
Bsp1286I	GDGCHC	2 cut(s)	9, 253
Bsp13I	TCCGGA	1 cut(s)	23
Bsp19I	CCATGG	1 cut(s)	589
BspANI	GGCC	4 cut(s)	251, 374, 569, 588
BspCNI	CTCAG	1 cut(s)	349
BspEI	TCCGGA	1 cut(s)	23
BspLI	GGNNCC	3 cut(s)	251, 568, 587
BspMAI	CTGCAG	1 cut(s)	640
BsrDI	GCAATG	1 cut(s)	695
BsrI	ACTGG	1 cut(s)	46
BssECI	CCNNGG	3 cut(s)	536, 589, 642
BssNI	GRCGYC	1 cut(s)	508
BssT1I	CCWWGG	3 cut(s)	536, 589, 642
Bst4CI	ACNGT	1 cut(s)	669
BstACI	GRCGYC	1 cut(s)	508
BstAPI	GCANNNNNTGC	2 cut(s)	671, 701
BstBAI	YACGTR	1 cut(s)	149
BstC8I	GCNNGC	3 cut(s)	9, 209, 702
BstDEI	CTNAG	3 cut(s)	84, 336, 519
BstDSI	CCRYGG	1 cut(s)	589
BstF5I	GGATG	2 cut(s)	261, 622
BstH2I	RGCGCY	1 cut(s)	143
BstHHI	GCGC	1 cut(s)	142
BstMAI	GTCTC	3 cut(s)	194, 333, 496
BstMWI	GCNNNNNNNGC	4 cut(s)	575, 644, 671, 701
BstNSI	RCATGY	5 cut(s)	211, 215, 240, 297, 436
BstSFI	CTRYAG	1 cut(s)	636
BstSLI	GKGCMC	1 cut(s)	253
BstV1I	GCAGC	2 cut(s)	622, 650
BstV2I	GAAGAC	3 cut(s)	9, 550, 701
Bsu36I	CCTNAGG	1 cut(s)	84
BsuRI	GGCC	4 cut(s)	251, 374, 569, 588
BtgI	CCRYGG	1 cut(s)	589
BtsCI	GGATG	2 cut(s)	261, 622
Cac8I	GCNNGC	3 cut(s)	9, 209, 702
CfoI	GCGC	1 cut(s)	142
Cfr13I	GGNCC	5 cut(s)	249, 250, 372, 567, 586
CseI	GACGC	1 cut(s)	497
CviAII	CATG	9 cut(s)	208, 212, 237, 294, 341, 433, 479, 590, 725
DdeI	CTNAG	3 cut(s)	84, 336, 519
Eco130I	CCWWGG	3 cut(s)	536, 589, 642
Eco24I	GRGCYC	1 cut(s)	253
Eco47III	AGCGCT	1 cut(s)	141
Eco57I	CTGAAG	1 cut(s)	711
Eco81I	CCTNAGG	1 cut(s)	84
EcoO109I	RGGNCCY	1 cut(s)	567
EcoRI	GAATTC	1 cut(s)	474
EcoT14I	CCWWGG	3 cut(s)	536, 589, 642
EcoT22I	ATGCAT	1 cut(s)	213
EcoT38I	GRGCYC	1 cut(s)	253
ErhI	CCWWGG	3 cut(s)	536, 589, 642
Esp3I	CGTCTC	1 cut(s)	496
FaeI	CATG	9 cut(s)	211, 215, 240, 297, 344, 436, 482, 593, 728
FaqI	GGGAC	2 cut(s)	206, 639
FatI	CATG	9 cut(s)	207, 211, 236, 293, 340, 432, 478, 589, 724
FauNDI	CATATG	3 cut(s)	377, 661, 681
Fnu4HI	GCNGC	2 cut(s)	636, 639
FokI	GGATG	2 cut(s)	248, 629
FriOI	GRGCYC	1 cut(s)	253
Fsp4HI	GCNGC	2 cut(s)	636, 639
FspBI	CTAG	3 cut(s)	170, 582, 612
GlaI	GCGC	1 cut(s)	141
GluI	GCNGC	2 cut(s)	636, 639
GsaI	CCCAGC	1 cut(s)	290
GsuI	CTGGAG	1 cut(s)	124
HaeII	RGCGCY	1 cut(s)	143
HaeIII	GGCC	4 cut(s)	251, 374, 569, 588
HapII	CCGG	2 cut(s)	24, 515
HgaI	GACGC	1 cut(s)	497
HhaI	GCGC	1 cut(s)	142
Hin1I	GRCGYC	1 cut(s)	508
Hin1II	CATG	9 cut(s)	211, 215, 240, 297, 344, 436, 482, 593, 728
Hin6I	GCGC	1 cut(s)	140
HinP1I	GCGC	1 cut(s)	140
HindIII	AAGCTT	2 cut(s)	272, 452
HinfI	GANTC	1 cut(s)	326
HpaII	CCGG	2 cut(s)	24, 515
Hpy166II	GTNNAC	1 cut(s)	562
Hpy188III	TCNNGA	4 cut(s)	24, 103, 221, 458
Hpy8I	GTNNAC	1 cut(s)	562
HpyAV	CCTTC	1 cut(s)	401
HpyCH4III	ACNGT	1 cut(s)	669
HpyCH4IV	ACGT	3 cut(s)	148, 195, 628
HpyCH4V	TGCA	5 cut(s)	207, 211, 638, 665, 679
HpyF10VI	GCNNNNNNNGC	4 cut(s)	575, 644, 671, 701
HpyF3I	CTNAG	3 cut(s)	84, 336, 519
HpySE526I	ACGT	3 cut(s)	148, 195, 628
Hsp92I	GRCGYC	1 cut(s)	508
Hsp92II	CATG	9 cut(s)	211, 215, 240, 297, 344, 436, 482, 593, 728
HspAI	GCGC	1 cut(s)	140
Kpn2I	TCCGGA	1 cut(s)	23
LmnI	GCTCC	2 cut(s)	4, 525
LpnPI	CCDG	8 cut(s)	27, 37, 88, 300, 443, 482, 528, 690
Lsp1109I	GCAGC	2 cut(s)	622, 650
LweI	GCATC	1 cut(s)	20
MaeI	CTAG	3 cut(s)	170, 582, 612
MaeII	ACGT	3 cut(s)	148, 195, 628
MaeIII	GTNAC	1 cut(s)	419
MboII	GAAGA	5 cut(s)	9, 12, 473, 555, 701
MhlI	GDGCHC	2 cut(s)	9, 253
MluCI	AATT	5 cut(s)	120, 231, 345, 474, 606
MlyI	GAGTC	1 cut(s)	335
Mph1103I	ATGCAT	1 cut(s)	213
MroI	TCCGGA	1 cut(s)	23
MseI	TTAA	1 cut(s)	269
MslI	CAYNNNNRTG	2 cut(s)	212, 296
MspI	CCGG	2 cut(s)	24, 515
MwoI	GCNNNNNNNGC	4 cut(s)	575, 644, 671, 701
NcoI	CCATGG	1 cut(s)	589
NdeI	CATATG	3 cut(s)	377, 661, 681
NlaIII	CATG	9 cut(s)	211, 215, 240, 297, 344, 436, 482, 593, 728
NlaIV	GGNNCC	3 cut(s)	251, 568, 587
NsiI	ATGCAT	1 cut(s)	213
NspI	RCATGY	5 cut(s)	211, 215, 240, 297, 436
OliI	CACNNNNGTG	1 cut(s)	296
PaeI	GCATGC	1 cut(s)	211
PciI	ACATGT	3 cut(s)	236, 293, 432
PflFI	GACNNNGTC	1 cut(s)	507
PkrI	GCNGC	2 cut(s)	637, 640
PleI	GAGTC	1 cut(s)	334
PpsI	GAGTC	1 cut(s)	334
Ppu21I	YACGTR	1 cut(s)	149
PscI	ACATGT	3 cut(s)	236, 293, 432
PspFI	CCCAGC	1 cut(s)	286
PspN4I	GGNNCC	3 cut(s)	251, 568, 587
PspOMI	GGGCCC	1 cut(s)	249
PspPI	GGNCC	5 cut(s)	249, 250, 372, 567, 586
PstI	CTGCAG	1 cut(s)	640
PsyI	GACNNNGTC	1 cut(s)	507
RseI	CAYNNNNRTG	2 cut(s)	212, 296
SaqAI	TTAA	1 cut(s)	269
SatI	GCNGC	2 cut(s)	636, 639
Sau96I	GGNCC	5 cut(s)	249, 250, 372, 567, 586
SchI	GAGTC	1 cut(s)	335
SduI	GDGCHC	2 cut(s)	9, 253
SfaNI	GCATC	1 cut(s)	20
SfcI	CTRYAG	1 cut(s)	636
SmiMI	CAYNNNNRTG	2 cut(s)	212, 296
SphI	GCATGC	1 cut(s)	211
Sse9I	AATT	5 cut(s)	120, 231, 345, 474, 606
SspMI	CTAG	3 cut(s)	170, 582, 612
StyI	CCWWGG	3 cut(s)	536, 589, 642
TaaI	ACNGT	1 cut(s)	669
TaiI	ACGT	3 cut(s)	151, 198, 631
TaqII	GACCGA	1 cut(s)	267
TasI	AATT	5 cut(s)	120, 231, 345, 474, 606
Tru1I	TTAA	1 cut(s)	269
Tru9I	TTAA	1 cut(s)	269
TseI	GCWGC	2 cut(s)	635, 638
TspDTI	ATGAA	2 cut(s)	357, 467
Tth111I	GACNNNGTC	1 cut(s)	507
XapI	RAATTY	2 cut(s)	120, 474
XceI	RCATGY	5 cut(s)	211, 215, 240, 297, 436
XspI	CTAG	3 cut(s)	170, 582, 612
Zsp2I	ATGCAT	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.