Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003414

Physical Location & Seq

Genomic Coordinates Forward (+)

54768980 .. 54770949

Gene Structure 1970 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG346900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGGCCTGGTATCAGACAATTCCAGATTCTGATCAGAGCATTTCTGATGAGGAAGAACCGGACCAAAATTGGGCGAACAAATGCGCTACGCTCGGCGGAACCACAGAGAAAAAGGAATTGTTACAAATTTCATCTCGGCTAGAAATGCTCAAAGGTGCGAATGCGAAGGCTTGCAATTTGGAAGATGAAGTTAGCTCTGACTATGAGGTGAACAATGTGGTGTCAAAAGTTTCTGTTAATGGCGGTGCTAAAGAGTTGCAAAAAAAAGAGGATGTTCATAGCTTTTGGAGCGATAAACAAGACGAATTACACTCGTGGTCTGCTGTGAGTAAAGAAGCTGAGGCACTCATGCGTTTGAATGAAAAAACTTCTTGCTCATTGTCGCTGTCTGCTTACTCGAATTTAAAGAAATCGTCTAAAGGAGCCAAAGGCAAAGGCAAACCAAAATTTTTGTTCCGTTTTCCGACACACAAGGAAGGAACCTCGTCCCATTCTATATCAAAGAATGATAGTGATGTGTCATTCAGGGTTCAAGAACTGCCTGAAAGGTTGGATGCAATTGAGCCTAGAAATATAGATCATTCAGATGTTGAACTTATTGAGGATATTCAGGGGGAAGAGGAATCAGAGATTGTGCTTAGAAATGAAGAACATTCAGATGTTGAACTTCTTGAGGACATTTCAGGGGAAGAGGAAAGTTTGTTAGAGGTTGTGCCTTTTGAAGCCAAGGCTATTCGGCATGGATGTATGGGGCAGTCAATGGCTGAGCTTCTAGATGGCCTTCAAGATAAGACGACTATTTGGAGAAAAAGTTCTAGAAAGCATAGTAGAAAACGACGTAAAAGGGAGCAGCCTGTTGTAAAGTGTGCATCTCCTCTGGGAGATGGAACTTTTGACATTGAAAGCTCTCCTGAGCACTTGGGTCATGGATTGCCAAGTGATATCAAGATTGATGATCAAATTTTGAAGCTTGCTGATCCAGAAATGAAGAGGCAGACATTGGTAGATCGATTTCAGGAAGCTATGAGTGACAGACTCCTTGTTGCAGTGCCCAAAACTTTAAAGAGTGGATTATTTGGGAAACTGCAGCAGGTGGTGCAGAGTGAGAAAGAAACTGATATAGAATTCTTGAAGAACCAGGGGGGAGCTAGCGAAAGTAGTAGTGCCTTGCAATGGCTCTATTTTTCTTTCTATTTTATTTTAGAGAAATATTTTGTTCATGAAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

409

Amino Acids

46.13

Weight (kDa)

5.12

Isoelectric Point (pI)

56.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02960 AT1G02960 AT1G02960 AT1G02960 AT1G02960 AT1G02960 AT1G02965
fragaria_vesca	FvH4_2g25160 FvH4_2g25160 FvH4_2g25160
malus_domestica	MD03G1283300.v1.1
prunus_persica	Prupe.8G256400_v2.0.a1 Prupe.8G256400_v2.0.a1 Prupe.8G256400_v2.0.a1 Prupe.8G256400_v2.0.a1 Prupe.8G256400_v2.0.a1 Prupe.8G256400_v2.0.a1 Prupe.8G256400_v2.0.a1
pyrus_communis	pycom03g22410
rosa_chinensis	RchiOBHm_Chr6g0293271
rosa_laevigata	RLG00000011962
rosa_multiflora	Rmu_ssc0000162.1_g000034
rosa_roxburghii	Rroxscaffold_7G00174290
rosa_rugosa	Rorug06G0233900 Rorug06G0234000 Rorug06G0234100 Rorug06G0234100 Rorug06G0234100 Rorug06G0234200
rosa_samantha	Rh6AG346900 Rh6AG347000 Rh6BG354300 Rh6CG360800 Rh6DG347300 Rh6DG347400
rosa_wichuraiana	Rw6G030200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1081
Acc36I	ACCTGC	1 cut(s)	1081
AciI	CCGC	2 cut(s)	96, 243
AclWI	GGATC	1 cut(s)	971
AcsI	RAATTY	5 cut(s)	126, 400, 446, 960, 1124
AfiI	CCNNNNNNNGG	2 cut(s)	70, 1173
AgsI	TTSAA	9 cut(s)	358, 533, 593, 665, 722, 785, 902, 967, 1132
AjnI	CCWGG	2 cut(s)	5, 1137
AloI	GAACNNNNNNTCC	2 cut(s)	796, 828
AluBI	AGCT	8 cut(s)	195, 282, 338, 769, 906, 970, 1022, 1148
AluI	AGCT	8 cut(s)	195, 282, 338, 769, 906, 970, 1022, 1148
Alw21I	GWGCWC	1 cut(s)	918
AlwI	GGATC	1 cut(s)	971
AlwNI	CAGNNNCTG	1 cut(s)	29
AoxI	GGCC	2 cut(s)	3, 778
ApeKI	GCWGC	2 cut(s)	850, 1087
ApoI	RAATTY	5 cut(s)	126, 400, 446, 960, 1124
Asp700I	GAANNNNTTC	1 cut(s)	811
AspLEI	GCGC	1 cut(s)	86
AspS9I	GGNCC	1 cut(s)	61
AsuHPI	GGTGA	1 cut(s)	220
AsuNHI	GCTAGC	1 cut(s)	1148
AvaII	GGWCC	1 cut(s)	61
BaeGI	GKGCMC	1 cut(s)	1053
BauI	CACGAG	1 cut(s)	313
Bbv12I	GWGCWC	1 cut(s)	918
BbvCI	CCTCAGC	1 cut(s)	339
BbvI	GCAGC	2 cut(s)	862, 1099
BccI	CCATC	2 cut(s)	770, 878
BciT130I	CCWGG	2 cut(s)	7, 1139
BclI	TGATCA	2 cut(s)	31, 955
BfaI	CTAG	5 cut(s)	140, 567, 773, 816, 1149
BfmI	CTRYAG	1 cut(s)	1085
BfuAI	ACCTGC	1 cut(s)	1081
BisI	GCNGC	2 cut(s)	851, 1088
BlpI	GCTNAGC	1 cut(s)	765
BlsI	GCNGC	2 cut(s)	852, 1089
Bme1390I	CCNGG	2 cut(s)	7, 1139
Bme18I	GGWCC	1 cut(s)	61
BmgT120I	GGNCC	1 cut(s)	61
BmiI	GGNNCC	3 cut(s)	100, 424, 481
BmrFI	CCNGG	2 cut(s)	7, 1139
BmsI	GCATC	2 cut(s)	544, 878
BmtI	GCTAGC	1 cut(s)	1152
Bpu10I	CCTNAGC	2 cut(s)	339, 912
Bpu1102I	GCTNAGC	1 cut(s)	765
BpuEI	CTTGAG	1 cut(s)	692
Bsa29I	ATCGAT	1 cut(s)	1009
BsaBI	GATNNNNATC	1 cut(s)	30
BsaJI	CCNNGG	2 cut(s)	726, 1138
BsaWI	WCCGGW	1 cut(s)	58
BsaXI	ACNNNNNCTCC	2 cut(s)	796, 826
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 1173
Bse3DI	GCAATG	1 cut(s)	1178
Bse8I	GATNNNNATC	1 cut(s)	30
BseBI	CCWGG	2 cut(s)	7, 1139
BseCI	ATCGAT	1 cut(s)	1009
BseDI	CCNNGG	2 cut(s)	726, 1138
BseGI	GGATG	3 cut(s)	277, 559, 749
BseJI	GATNNNNATC	1 cut(s)	30
BseLI	CCNNNNNNNGG	2 cut(s)	70, 1173
BseMI	GCAATG	1 cut(s)	1178
BseMII	CTCAG	3 cut(s)	330, 756, 903
BseRI	GAGGAG	1 cut(s)	864
BseSI	GKGCMC	1 cut(s)	1053
BseXI	GCAGC	2 cut(s)	862, 1099
BsgI	GTGCAG	1 cut(s)	1118
BshFI	GGCC	2 cut(s)	5, 780
BshVI	ATCGAT	1 cut(s)	1009
BsiHKAI	GWGCWC	1 cut(s)	918
BsiSI	CCGG	1 cut(s)	59
BslFI	GGGAC	1 cut(s)	472
BslI	CCNNNNNNNGG	2 cut(s)	70, 1173
BsmFI	GGGAC	1 cut(s)	472
BsmI	GAATGC	1 cut(s)	166
BsnI	GGCC	2 cut(s)	5, 780
Bsp1286I	GDGCHC	2 cut(s)	918, 1053
Bsp143I	GATC	5 cut(s)	31, 577, 955, 976, 1006
Bsp1720I	GCTNAGC	1 cut(s)	765
BspACI	CCGC	2 cut(s)	96, 243
BspANI	GGCC	2 cut(s)	5, 780
BspCNI	CTCAG	3 cut(s)	331, 757, 904
BspDI	ATCGAT	1 cut(s)	1009
BspHI	TCATGA	1 cut(s)	1219
BspLI	GGNNCC	3 cut(s)	100, 424, 481
BspMAI	CTGCAG	1 cut(s)	1089
BspMI	ACCTGC	1 cut(s)	1081
BspOI	GCTAGC	1 cut(s)	1152
BspPI	GGATC	1 cut(s)	971
BsrDI	GCAATG	1 cut(s)	1178
BssECI	CCNNGG	2 cut(s)	726, 1138
BssMI	GATC	5 cut(s)	31, 577, 955, 976, 1006
BssSI	CACGAG	1 cut(s)	313
BssT1I	CCWWGG	1 cut(s)	726
Bst2BI	CACGAG	1 cut(s)	313
Bst2UI	CCWGG	2 cut(s)	7, 1139
Bst6I	CTCTTC	3 cut(s)	612, 684, 983
BstAPI	GCANNNNNTGC	1 cut(s)	1096
BstC8I	GCNNGC	3 cut(s)	172, 972, 1150
BstDEI	CTNAG	4 cut(s)	339, 638, 765, 912
BstF5I	GGATG	3 cut(s)	277, 559, 749
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	5 cut(s)	34, 580, 958, 979, 1009
BstMBI	GATC	5 cut(s)	31, 577, 955, 976, 1006
BstMWI	GCNNNNNNNGC	3 cut(s)	145, 288, 1096
BstNI	CCWGG	2 cut(s)	7, 1139
BstSCI	CCNGG	2 cut(s)	5, 1137
BstSFI	CTRYAG	1 cut(s)	1085
BstSLI	GKGCMC	1 cut(s)	1053
BstV1I	GCAGC	2 cut(s)	862, 1099
Bsu15I	ATCGAT	1 cut(s)	1009
BsuRI	GGCC	2 cut(s)	5, 780
BsuTUI	ATCGAT	1 cut(s)	1009
BtsCI	GGATG	3 cut(s)	277, 559, 749
BtsI	GCAGTG	1 cut(s)	1053
BtsIMutI	CAGTG	1 cut(s)	1053
BveI	ACCTGC	1 cut(s)	1081
Cac8I	GCNNGC	3 cut(s)	172, 972, 1150
CaiI	CAGNNNCTG	1 cut(s)	29
CciI	TCATGA	1 cut(s)	1219
CfoI	GCGC	1 cut(s)	86
Cfr13I	GGNCC	1 cut(s)	61
ClaI	ATCGAT	1 cut(s)	1009
CviAII	CATG	4 cut(s)	349, 740, 926, 1220
DdeI	CTNAG	4 cut(s)	339, 638, 765, 912
DpnI	GATC	5 cut(s)	33, 579, 957, 978, 1008
DpnII	GATC	5 cut(s)	31, 577, 955, 976, 1006
DraI	TTTAAA	2 cut(s)	405, 1062
Eam1104I	CTCTTC	3 cut(s)	612, 684, 983
EarI	CTCTTC	3 cut(s)	612, 684, 983
EciI	GGCGGA	1 cut(s)	111
Eco130I	CCWWGG	1 cut(s)	726
Eco32I	GATATC	1 cut(s)	943
Eco47I	GGWCC	1 cut(s)	61
EcoRI	GAATTC	1 cut(s)	1124
EcoRII	CCWGG	2 cut(s)	5, 1137
EcoRV	GATATC	1 cut(s)	943
EcoT14I	CCWWGG	1 cut(s)	726
ErhI	CCWWGG	1 cut(s)	726
FaeI	CATG	4 cut(s)	352, 743, 929, 1223
FaqI	GGGAC	1 cut(s)	472
FatI	CATG	4 cut(s)	348, 739, 925, 1219
FbaI	TGATCA	2 cut(s)	31, 955
Fnu4HI	GCNGC	2 cut(s)	851, 1088
FokI	GGATG	3 cut(s)	284, 566, 756
Fsp4HI	GCNGC	2 cut(s)	851, 1088
FspBI	CTAG	5 cut(s)	140, 567, 773, 816, 1149
GlaI	GCGC	1 cut(s)	85
GluI	GCNGC	2 cut(s)	851, 1088
HaeIII	GGCC	2 cut(s)	5, 780
HapII	CCGG	1 cut(s)	59
HhaI	GCGC	1 cut(s)	86
Hin1II	CATG	4 cut(s)	352, 743, 929, 1223
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HindIII	AAGCTT	1 cut(s)	968
HinfI	GANTC	3 cut(s)	26, 623, 1035
HpaII	CCGG	1 cut(s)	59
HphI	GGTGA	1 cut(s)	220
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	9 cut(s)	15, 31, 36, 46, 199, 465, 586, 628, 658
Hpy8I	GTNNAC	1 cut(s)	211
Hpy99I	CGWCG	1 cut(s)	840
HpyAV	CCTTC	3 cut(s)	160, 470, 791
HpyCH4IV	ACGT	1 cut(s)	838
HpyCH4V	TGCA	8 cut(s)	174, 259, 557, 869, 1046, 1087, 1099, 1171
HpyF10VI	GCNNNNNNNGC	3 cut(s)	145, 288, 1096
HpyF3I	CTNAG	4 cut(s)	339, 638, 765, 912
HpySE526I	ACGT	1 cut(s)	838
Hsp92II	CATG	4 cut(s)	352, 743, 929, 1223
HspAI	GCGC	1 cut(s)	84
Ksp22I	TGATCA	2 cut(s)	31, 955
Kzo9I	GATC	5 cut(s)	31, 577, 955, 976, 1006
LmnI	GCTCC	4 cut(s)	288, 422, 847, 1145
Lsp1109I	GCAGC	2 cut(s)	862, 1099
LweI	GCATC	2 cut(s)	544, 878
MaeI	CTAG	5 cut(s)	140, 567, 773, 816, 1149
MaeII	ACGT	1 cut(s)	838
MaeIII	GTNAC	2 cut(s)	120, 1028
MalI	GATC	5 cut(s)	33, 579, 957, 978, 1008
MboI	GATC	5 cut(s)	31, 577, 955, 976, 1006
MboII	GAAGA	7 cut(s)	65, 194, 629, 659, 701, 1000, 1144
MfeI	CAATTG	1 cut(s)	558
MhlI	GDGCHC	2 cut(s)	918, 1053
MlyI	GAGTC	1 cut(s)	1029
MmeI	TCCRAC	2 cut(s)	488, 531
MroXI	GAANNNNTTC	1 cut(s)	811
MseI	TTAA	3 cut(s)	237, 404, 1061
MslI	CAYNNNNRTG	2 cut(s)	585, 657
MspI	CCGG	1 cut(s)	59
MspR9I	CCNGG	2 cut(s)	7, 1139
MunI	CAATTG	1 cut(s)	558
Mva1269I	GAATGC	1 cut(s)	166
MvaI	CCWGG	2 cut(s)	7, 1139
MwoI	GCNNNNNNNGC	3 cut(s)	145, 288, 1096
NdeII	GATC	5 cut(s)	31, 577, 955, 976, 1006
NheI	GCTAGC	1 cut(s)	1148
NlaIII	CATG	4 cut(s)	352, 743, 929, 1223
NlaIV	GGNNCC	3 cut(s)	100, 424, 481
NmeAIII	GCCGAG	2 cut(s)	72, 115
NmuCI	GTSAC	1 cut(s)	1028
PagI	TCATGA	1 cut(s)	1219
PaqCI	CACCTGC	1 cut(s)	1081
PctI	GAATGC	1 cut(s)	166
PdmI	GAANNNNTTC	1 cut(s)	811
PfeI	GAWTC	2 cut(s)	26, 623
PkrI	GCNGC	2 cut(s)	852, 1089
PleI	GAGTC	1 cut(s)	1029
PpsI	GAGTC	1 cut(s)	1029
Psp6I	CCWGG	2 cut(s)	5, 1137
PspGI	CCWGG	2 cut(s)	5, 1137
PspN4I	GGNNCC	3 cut(s)	100, 424, 481
PspPI	GGNCC	1 cut(s)	61
PstI	CTGCAG	1 cut(s)	1089
PstNI	CAGNNNCTG	1 cut(s)	29
RseI	CAYNNNNRTG	2 cut(s)	585, 657
SaqAI	TTAA	3 cut(s)	237, 404, 1061
SatI	GCNGC	2 cut(s)	851, 1088
Sau3AI	GATC	5 cut(s)	31, 577, 955, 976, 1006
Sau96I	GGNCC	1 cut(s)	61
SchI	GAGTC	1 cut(s)	1029
ScrFI	CCNGG	2 cut(s)	7, 1139
SduI	GDGCHC	2 cut(s)	918, 1053
SfaNI	GCATC	2 cut(s)	544, 878
SfcI	CTRYAG	1 cut(s)	1085
SinI	GGWCC	1 cut(s)	61
SmiMI	CAYNNNNRTG	2 cut(s)	585, 657
SmlI	CTYRAG	1 cut(s)	671
SmoI	CTYRAG	1 cut(s)	671
SsiI	CCGC	2 cut(s)	96, 243
SspI	AATATT	1 cut(s)	1211
SspMI	CTAG	5 cut(s)	140, 567, 773, 816, 1149
StyD4I	CCNGG	2 cut(s)	5, 1137
StyI	CCWWGG	1 cut(s)	726
TaiI	ACGT	1 cut(s)	841
TaqI	TCGA	2 cut(s)	398, 1009
TfiI	GAWTC	2 cut(s)	26, 623
Tru1I	TTAA	3 cut(s)	237, 404, 1061
Tru9I	TTAA	3 cut(s)	237, 404, 1061
TscAI	CASTG	1 cut(s)	1053
TseFI	GTSAC	1 cut(s)	1028
TseI	GCWGC	2 cut(s)	850, 1087
Tsp45I	GTSAC	1 cut(s)	1028
TspDTI	ATGAA	7 cut(s)	120, 201, 266, 375, 660, 1001, 1208
TspGWI	ACGGA	1 cut(s)	446
TspRI	CASTG	1 cut(s)	1053
VpaK11BI	GGWCC	1 cut(s)	61
XapI	RAATTY	5 cut(s)	126, 400, 446, 960, 1124
XbaI	TCTAGA	2 cut(s)	772, 815
XmnI	GAANNNNTTC	1 cut(s)	811
XspI	CTAG	5 cut(s)	140, 567, 773, 816, 1149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.