RchiOBHm_Chr6g0293271

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0003414
Physical Location & Seq
Forward (+)
56004171 .. 56007507
3337 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26315

Sequence Viewer

Length: 1452 bp
ATGGCCTGGTATCAGACAATTCCAGATTCTGATCAGAGCATTTCTGATGAGGAAGAACCGGACCAAAATTGGGCGAACAAATGCGCTACGCTCGGCGGAACCACAGAGAAAAAGGAATTGTTACAAATTTCATCTCGGCTAGAAATGCTCAAAGGTGCGAATGCGAAGGCTTGCAATTTGGAAGATGAAGTTAGCTCTGACTATGAGGTGAACAATGTGGTGTCAAAAGTTTCTGTTAATGGCAGTGCTAAAGAGTTGCGAAAAAAAGAGGATGTTCATAGCTTTTGGAGCGATAAACAAGACGAATTACACTCGTGGTCTGCTGTGAGTAAAGAAGCTGAGGCACTCATGCGTTTGAATGAAAAAACTTCTTGCTCATTGTCACTGTCTGCTTACTCGAATTTAAAGAAATCGTCTAAAGGAGCCAAAGGCAAAGGCAAACCAAAATTTTTGTTCCGTTTTCCGACACACAAGGAAGGAACCTCGTCCCATTCTATATCTAAGAATGATAGTGATGTGTCATTCAGGGTTCAAGAACTGCCTGAAAGGTTGGATGCAATTGAGCCTAGAAATGTAGATCATTCAGATGTTGAACTTATTGAGGATATTCAGGGGGAAGAGGAATCAGAGATTGTGCTTAGAAATGAAGAACATTCAGATGTTGAACTTCTTGAGGACATTTCAGGGGAAGAGGAAAGTTTGTTAGAGGTTGTGCCTTTTGAAGCCAAGGCTATTCGGCATGGATGTATGGGGCAGTCAATGGCTGAGCTTCTAGATGGCCTTCAAGATAAGACGACTATTTGGAGAAAAAGTTCTAGAAAGCATAGTAGAAAACGACGTAAAAAGGAGCAGCCTGTTGTAAAGTGTGCATCTCCTCTGGGAGATGGAACTTTTGACATTGAAAGCTCTCCTGAGCACTTGGGTCATGGATTGCCAAGTGATATCAAGATTGATGATCAAATTTTGAAGCTTGCTGATCCAGAAATGAAGAGGCAGACATTGGTAGATCGATTTCAGGAAGCTATGAGTGACAGATTCCTTGTTGCAGTGCCCAAAACTTTAAAGAGTGGATTATTTGGGAAACTGCAGCAGGTGGTGCAGAGTGAGAAAGAAACTGATATAGAATTCTTGAAGAAGATCCAGGAGGGAGCTAGCGAAAATGACCCAAACTGCATGGATGTGAAGATTCTTTCAAAATACCTGGATGCAAAGCTTACCGTGTGTCACTGCTCCTTCGGTAATAACTCAAAGCGCCTCCCATCGCCAGAGGTCTGCGAAGAAATGGTTGACGAAGGACCGGAAAGGACTATTATTTTCAATCCACGAGTTTGCAATGATATTGACCTTGATATTGGGAAATGGATTCGTATACACCCTCCATGGAGGGACATCCGTGTCGGCACTGCTCAAAACATAATCCTGTCGACATATTTCTCTGAAATTTCAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

483

Amino Acids

54.48

Weight (kDa)

5.17

Isoelectric Point (pI)

50.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1081
AasI GACNNNNNNGTC 1 cut(s) 1394
Acc36I ACCTGC 1 cut(s) 1081
AccI GTMKAC 2 cut(s) 1369, 1424
AciI CCGC 1 cut(s) 96
AclWI GGATC 2 cut(s) 971, 1132
AcsI RAATTY 6 cut(s) 126, 400, 446, 960, 1124, 1440
AfiI CCNNNNNNNGG 1 cut(s) 70
AjnI CCWGG 3 cut(s) 5, 1140, 1200
AloI GAACNNNNNNTCC 2 cut(s) 796, 828
AluBI AGCT 9 cut(s) 195, 282, 338, 769, 906, 970, 1022, 1151, 1213
AluI AGCT 9 cut(s) 195, 282, 338, 769, 906, 970, 1022, 1151, 1213
Alw21I GWGCWC 1 cut(s) 918
AlwI GGATC 2 cut(s) 971, 1132
AlwNI CAGNNNCTG 1 cut(s) 29
AoxI GGCC 2 cut(s) 3, 778
ApeKI GCWGC 2 cut(s) 850, 1087
ApoI RAATTY 6 cut(s) 126, 400, 446, 960, 1124, 1440
Asp700I GAANNNNTTC 1 cut(s) 811
AspLEI GCGC 2 cut(s) 86, 1254
AspS9I GGNCC 2 cut(s) 61, 1295
AsuHPI GGTGA 1 cut(s) 220
AsuNHI GCTAGC 1 cut(s) 1151
AvaII GGWCC 2 cut(s) 61, 1295
BaeGI GKGCMC 1 cut(s) 1053
BauI CACGAG 2 cut(s) 313, 1323
Bbv12I GWGCWC 1 cut(s) 918
BbvCI CCTCAGC 1 cut(s) 339
BbvI GCAGC 2 cut(s) 862, 1099
BccI CCATC 3 cut(s) 770, 878, 1267
BciT130I CCWGG 3 cut(s) 7, 1142, 1202
BclI TGATCA 2 cut(s) 31, 955
BfaI CTAG 5 cut(s) 140, 567, 773, 816, 1152
BfmI CTRYAG 1 cut(s) 1085
BfoI RGCGCY 1 cut(s) 1255
BfuAI ACCTGC 1 cut(s) 1081
BisI GCNGC 2 cut(s) 851, 1088
BlpI GCTNAGC 1 cut(s) 765
BlsI GCNGC 2 cut(s) 852, 1089
Bme1390I CCNGG 3 cut(s) 7, 1142, 1202
Bme18I GGWCC 2 cut(s) 61, 1295
BmgT120I GGNCC 2 cut(s) 61, 1295
BmiI GGNNCC 3 cut(s) 100, 424, 481
BmrFI CCNGG 3 cut(s) 7, 1142, 1202
BmsI GCATC 3 cut(s) 544, 878, 1195
BmtI GCTAGC 1 cut(s) 1155
Bpu10I CCTNAGC 2 cut(s) 339, 912
Bpu1102I GCTNAGC 1 cut(s) 765
BpuEI CTTGAG 1 cut(s) 692
Bsa29I ATCGAT 1 cut(s) 1009
BsaBI GATNNNNATC 1 cut(s) 30
BsaJI CCNNGG 2 cut(s) 726, 1379
BsaWI WCCGGW 2 cut(s) 58, 1297
BsaXI ACNNNNNCTCC 2 cut(s) 796, 826
Bsc4I CCNNNNNNNGG 1 cut(s) 70
Bse3DI GCAATG 1 cut(s) 1339
Bse8I GATNNNNATC 1 cut(s) 30
BseBI CCWGG 3 cut(s) 7, 1142, 1202
BseCI ATCGAT 1 cut(s) 1009
BseDI CCNNGG 2 cut(s) 726, 1379
BseGI GGATG 6 cut(s) 277, 559, 749, 1183, 1210, 1389
BseJI GATNNNNATC 1 cut(s) 30
BseLI CCNNNNNNNGG 1 cut(s) 70
BseMI GCAATG 1 cut(s) 1339
BseMII CTCAG 3 cut(s) 330, 756, 903
BseRI GAGGAG 1 cut(s) 864
BseSI GKGCMC 1 cut(s) 1053
BseXI GCAGC 2 cut(s) 862, 1099
BsgI GTGCAG 1 cut(s) 1118
BshFI GGCC 2 cut(s) 5, 780
BshVI ATCGAT 1 cut(s) 1009
BsiHKAI GWGCWC 1 cut(s) 918
BsiSI CCGG 2 cut(s) 59, 1298
BslFI GGGAC 2 cut(s) 472, 1400
BslI CCNNNNNNNGG 1 cut(s) 70
BsmFI GGGAC 2 cut(s) 472, 1400
BsmI GAATGC 1 cut(s) 166
BsnI GGCC 2 cut(s) 5, 780
Bsp1286I GDGCHC 2 cut(s) 918, 1053
Bsp143I GATC 6 cut(s) 31, 577, 955, 976, 1006, 1137
Bsp1720I GCTNAGC 1 cut(s) 765
Bsp19I CCATGG 1 cut(s) 1379
BspACI CCGC 1 cut(s) 96
BspANI GGCC 2 cut(s) 5, 780
BspCNI CTCAG 3 cut(s) 331, 757, 904
BspDI ATCGAT 1 cut(s) 1009
BspLI GGNNCC 3 cut(s) 100, 424, 481
BspMAI CTGCAG 1 cut(s) 1089
BspMI ACCTGC 1 cut(s) 1081
BspOI GCTAGC 1 cut(s) 1155
BspPI GGATC 2 cut(s) 971, 1132
BsrDI GCAATG 1 cut(s) 1339
BssECI CCNNGG 2 cut(s) 726, 1379
BssMI GATC 6 cut(s) 31, 577, 955, 976, 1006, 1137
BssNAI GTATAC 1 cut(s) 1370
BssSI CACGAG 2 cut(s) 313, 1323
BssT1I CCWWGG 2 cut(s) 726, 1379
Bst1107I GTATAC 1 cut(s) 1370
Bst2BI CACGAG 2 cut(s) 313, 1323
Bst2UI CCWGG 3 cut(s) 7, 1142, 1202
Bst4CI ACNGT 2 cut(s) 387, 1219
Bst6I CTCTTC 3 cut(s) 612, 684, 983
BstAPI GCANNNNNTGC 1 cut(s) 1096
BstC8I GCNNGC 3 cut(s) 172, 972, 1153
BstDEI CTNAG 5 cut(s) 339, 501, 638, 765, 912
BstDSI CCRYGG 1 cut(s) 1379
BstF5I GGATG 6 cut(s) 277, 559, 749, 1183, 1210, 1389
BstH2I RGCGCY 1 cut(s) 1255
BstHHI GCGC 2 cut(s) 86, 1254
BstKTI GATC 6 cut(s) 34, 580, 958, 979, 1009, 1140
BstMBI GATC 6 cut(s) 31, 577, 955, 976, 1006, 1137
BstMWI GCNNNNNNNGC 3 cut(s) 145, 288, 1096
BstNI CCWGG 3 cut(s) 7, 1142, 1202
BstSCI CCNGG 3 cut(s) 5, 1140, 1200
BstSFI CTRYAG 1 cut(s) 1085
BstSLI GKGCMC 1 cut(s) 1053
BstV1I GCAGC 2 cut(s) 862, 1099
BstX2I RGATCY 1 cut(s) 1137
BstYI RGATCY 1 cut(s) 1137
BstZ17I GTATAC 1 cut(s) 1370
Bsu15I ATCGAT 1 cut(s) 1009
BsuRI GGCC 2 cut(s) 5, 780
BsuTUI ATCGAT 1 cut(s) 1009
BtgI CCRYGG 1 cut(s) 1379
BtgZI GCGATG 1 cut(s) 1245
BtsCI GGATG 6 cut(s) 277, 559, 749, 1183, 1210, 1389
BtsI GCAGTG 4 cut(s) 250, 1053, 1225, 1401
BtsIMutI CAGTG 5 cut(s) 250, 383, 1053, 1225, 1401
BveI ACCTGC 1 cut(s) 1081
Cac8I GCNNGC 3 cut(s) 172, 972, 1153
CaiI CAGNNNCTG 1 cut(s) 29
CfoI GCGC 2 cut(s) 86, 1254
Cfr13I GGNCC 2 cut(s) 61, 1295
ClaI ATCGAT 1 cut(s) 1009
CviAII CATG 5 cut(s) 349, 740, 926, 1174, 1380
DdeI CTNAG 5 cut(s) 339, 501, 638, 765, 912
DpnI GATC 6 cut(s) 33, 579, 957, 978, 1008, 1139
DpnII GATC 6 cut(s) 31, 577, 955, 976, 1006, 1137
DraI TTTAAA 2 cut(s) 405, 1062
DrdI GACNNNNNNGTC 1 cut(s) 1394
DseDI GACNNNNNNGTC 1 cut(s) 1394
Eam1104I CTCTTC 3 cut(s) 612, 684, 983
EarI CTCTTC 3 cut(s) 612, 684, 983
EciI GGCGGA 1 cut(s) 111
Eco130I CCWWGG 2 cut(s) 726, 1379
Eco32I GATATC 1 cut(s) 943
Eco47I GGWCC 2 cut(s) 61, 1295
EcoRI GAATTC 1 cut(s) 1124
EcoRII CCWGG 3 cut(s) 5, 1140, 1200
EcoRV GATATC 1 cut(s) 943
EcoT14I CCWWGG 2 cut(s) 726, 1379
ErhI CCWWGG 2 cut(s) 726, 1379
FaeI CATG 5 cut(s) 352, 743, 929, 1177, 1383
FaqI GGGAC 2 cut(s) 472, 1400
FatI CATG 5 cut(s) 348, 739, 925, 1173, 1379
FbaI TGATCA 2 cut(s) 31, 955
FblI GTMKAC 2 cut(s) 1369, 1424
Fnu4HI GCNGC 2 cut(s) 851, 1088
FokI GGATG 6 cut(s) 284, 566, 756, 1190, 1217, 1376
Fsp4HI GCNGC 2 cut(s) 851, 1088
FspBI CTAG 5 cut(s) 140, 567, 773, 816, 1152
GlaI GCGC 2 cut(s) 85, 1253
GluI GCNGC 2 cut(s) 851, 1088
HaeII RGCGCY 1 cut(s) 1255
HaeIII GGCC 2 cut(s) 5, 780
HapII CCGG 2 cut(s) 59, 1298
HhaI GCGC 2 cut(s) 86, 1254
Hin1II CATG 5 cut(s) 352, 743, 929, 1177, 1383
Hin6I GCGC 2 cut(s) 84, 1252
HinP1I GCGC 2 cut(s) 84, 1252
HincII GTYRAC 2 cut(s) 1288, 1425
HindII GTYRAC 2 cut(s) 1288, 1425
HindIII AAGCTT 2 cut(s) 968, 1211
HinfI GANTC 5 cut(s) 26, 623, 1035, 1186, 1363
HpaII CCGG 2 cut(s) 59, 1298
HphI GGTGA 1 cut(s) 220
Hpy166II GTNNAC 4 cut(s) 211, 1288, 1370, 1425
Hpy8I GTNNAC 4 cut(s) 211, 1288, 1370, 1425
Hpy99I CGWCG 1 cut(s) 840
HpyAV CCTTC 5 cut(s) 160, 470, 791, 1243, 1286
HpyCH4III ACNGT 2 cut(s) 387, 1219
HpyCH4IV ACGT 1 cut(s) 838
HpyCH4V TGCA 9 cut(s) 174, 557, 869, 1046, 1087, 1099, 1173, 1208, 1332
HpyF10VI GCNNNNNNNGC 3 cut(s) 145, 288, 1096
HpyF3I CTNAG 5 cut(s) 339, 501, 638, 765, 912
HpySE526I ACGT 1 cut(s) 838
Hsp92II CATG 5 cut(s) 352, 743, 929, 1177, 1383
HspAI GCGC 2 cut(s) 84, 1252
Ksp22I TGATCA 2 cut(s) 31, 955
Kzo9I GATC 6 cut(s) 31, 577, 955, 976, 1006, 1137
LmnI GCTCC 5 cut(s) 288, 422, 847, 1148, 1235
Lsp1109I GCAGC 2 cut(s) 862, 1099
LweI GCATC 3 cut(s) 544, 878, 1195
MaeI CTAG 5 cut(s) 140, 567, 773, 816, 1152
MaeII ACGT 1 cut(s) 838
MaeIII GTNAC 4 cut(s) 120, 381, 1028, 1223
MalI GATC 6 cut(s) 33, 579, 957, 978, 1008, 1139
MboI GATC 6 cut(s) 31, 577, 955, 976, 1006, 1137
MfeI CAATTG 1 cut(s) 558
MflI RGATCY 1 cut(s) 1137
MhlI GDGCHC 2 cut(s) 918, 1053
MmeI TCCRAC 2 cut(s) 488, 531
MroXI GAANNNNTTC 1 cut(s) 811
MseI TTAA 3 cut(s) 237, 404, 1061
MslI CAYNNNNRTG 3 cut(s) 585, 657, 1178
MspI CCGG 2 cut(s) 59, 1298
MspR9I CCNGG 3 cut(s) 7, 1142, 1202
MunI CAATTG 1 cut(s) 558
Mva1269I GAATGC 1 cut(s) 166
MvaI CCWGG 3 cut(s) 7, 1142, 1202
MwoI GCNNNNNNNGC 3 cut(s) 145, 288, 1096
NcoI CCATGG 1 cut(s) 1379
NdeII GATC 6 cut(s) 31, 577, 955, 976, 1006, 1137
NheI GCTAGC 1 cut(s) 1151
NlaIII CATG 5 cut(s) 352, 743, 929, 1177, 1383
NlaIV GGNNCC 3 cut(s) 100, 424, 481
NmeAIII GCCGAG 2 cut(s) 72, 115
NmuCI GTSAC 3 cut(s) 381, 1028, 1223
PaqCI CACCTGC 1 cut(s) 1081
PctI GAATGC 1 cut(s) 166
PdmI GAANNNNTTC 1 cut(s) 811
PfeI GAWTC 5 cut(s) 26, 623, 1035, 1186, 1363
PfoI TCCNGGA 1 cut(s) 1140
PkrI GCNGC 2 cut(s) 852, 1089
Psp6I CCWGG 3 cut(s) 5, 1140, 1200
PspGI CCWGG 3 cut(s) 5, 1140, 1200
PspN4I GGNNCC 3 cut(s) 100, 424, 481
PspPI GGNCC 2 cut(s) 61, 1295
PstI CTGCAG 1 cut(s) 1089
PstNI CAGNNNCTG 1 cut(s) 29
PsuI RGATCY 1 cut(s) 1137
RseI CAYNNNNRTG 3 cut(s) 585, 657, 1178
SalI GTCGAC 1 cut(s) 1423
SaqAI TTAA 3 cut(s) 237, 404, 1061
SatI GCNGC 2 cut(s) 851, 1088
Sau3AI GATC 6 cut(s) 31, 577, 955, 976, 1006, 1137
Sau96I GGNCC 2 cut(s) 61, 1295
ScrFI CCNGG 3 cut(s) 7, 1142, 1202
SduI GDGCHC 2 cut(s) 918, 1053
SfaNI GCATC 3 cut(s) 544, 878, 1195
SfcI CTRYAG 1 cut(s) 1085
SinI GGWCC 2 cut(s) 61, 1295
SmiMI CAYNNNNRTG 3 cut(s) 585, 657, 1178
SmlI CTYRAG 1 cut(s) 671
SmoI CTYRAG 1 cut(s) 671
SsiI CCGC 1 cut(s) 96
SspMI CTAG 5 cut(s) 140, 567, 773, 816, 1152
StyD4I CCNGG 3 cut(s) 5, 1140, 1200
StyI CCWWGG 2 cut(s) 726, 1379
TaaI ACNGT 2 cut(s) 387, 1219
TaiI ACGT 1 cut(s) 841
TaqI TCGA 3 cut(s) 398, 1009, 1424
TfiI GAWTC 5 cut(s) 26, 623, 1035, 1186, 1363
Tru1I TTAA 3 cut(s) 237, 404, 1061
Tru9I TTAA 3 cut(s) 237, 404, 1061
TscAI CASTG 5 cut(s) 250, 390, 1053, 1232, 1408
TseFI GTSAC 3 cut(s) 381, 1028, 1223
TseI GCWGC 2 cut(s) 850, 1087
Tsp45I GTSAC 3 cut(s) 381, 1028, 1223
TspDTI ATGAA 6 cut(s) 120, 201, 266, 375, 660, 1001
TspGWI ACGGA 2 cut(s) 446, 1382
TspRI CASTG 5 cut(s) 250, 390, 1053, 1232, 1408
VpaK11BI GGWCC 2 cut(s) 61, 1295
XapI RAATTY 6 cut(s) 126, 400, 446, 960, 1124, 1440
XbaI TCTAGA 2 cut(s) 772, 815
XmiI GTMKAC 2 cut(s) 1369, 1424
XmnI GAANNNNTTC 1 cut(s) 811
XspI CTAG 5 cut(s) 140, 567, 773, 816, 1152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.