Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003414

Physical Location & Seq

Genomic Coordinates Reverse (-)

671661 .. 672814

Gene Structure 1154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G02965.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGGAATTGGGCCTATTAAAGCCCAATTACTAATACTAAAAGAAAGTAAACTCAGAGAAGGGCCCATATCCAAGCATACTAACGGCAAGGACGGTATAAAGGTGCACGCCGGCGAGATCGATTTGAACGGTGACGGCGAATGTGACGGCGAAGAAACCTTCCGGGGAATCCAGATTCCGATCAGAGCATCTCTGGAGGAGGAAGAGATCATCAATGTTAGTTTGGGAGAAAATGATATGTGGCCAAGCGAGAATGCAAAGGAAGAAGAGGGAGGATTAATACTTCAAACAAAGCTCGAAAAACTCATAGGTTGTGGTGCGCTAAATTATGCTAGGGATCCCGGTGATGTAACGGTGGAAGCAACTATACTTACAAGTACTGATTTGATGCCGAAGATTTACCAGAATTGTGTTACAGGAAATGCCGAAGATTTACCAGAAGAAGTCTTGGCTAAGAATAAAGTCCTTATCTCCGCAATTGGCACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

162

Amino Acids

17.45

Weight (kDa)

4.55

Isoelectric Point (pI)

34.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02960 AT1G02960 AT1G02960 AT1G02960 AT1G02960 AT1G02960 AT1G02965
fragaria_vesca	FvH4_2g25160 FvH4_2g25160 FvH4_2g25160
malus_domestica	MD03G1283300.v1.1
prunus_persica	Prupe.8G256400_v2.0.a1 Prupe.8G256400_v2.0.a1 Prupe.8G256400_v2.0.a1 Prupe.8G256400_v2.0.a1 Prupe.8G256400_v2.0.a1 Prupe.8G256400_v2.0.a1 Prupe.8G256400_v2.0.a1
pyrus_communis	pycom03g22410
rosa_chinensis	RchiOBHm_Chr6g0293271
rosa_laevigata	RLG00000011962
rosa_multiflora	Rmu_ssc0000162.1_g000034
rosa_roxburghii	Rroxscaffold_7G00174290
rosa_rugosa	Rorug06G0233900 Rorug06G0234000 Rorug06G0234100 Rorug06G0234100 Rorug06G0234100 Rorug06G0234200
rosa_samantha	Rh6AG346900 Rh6AG347000 Rh6BG354300 Rh6CG360800 Rh6DG347300 Rh6DG347400
rosa_wichuraiana	Rw6G030200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	482
AciI	CCGC	1 cut(s)	474
AclWI	GGATC	2 cut(s)	332, 345
AcoI	YGGCCR	1 cut(s)	242
AfaI	GTAC	1 cut(s)	379
AgsI	TTSAA	2 cut(s)	127, 287
AluBI	AGCT	1 cut(s)	295
AluI	AGCT	1 cut(s)	295
Alw21I	GWGCWC	1 cut(s)	108
Alw44I	GTGCAC	1 cut(s)	104
AlwI	GGATC	2 cut(s)	332, 345
AoxI	GGCC	3 cut(s)	11, 62, 242
ApaI	GGGCCC	1 cut(s)	66
ApaLI	GTGCAC	1 cut(s)	104
AseI	ATTAAT	1 cut(s)	278
AspLEI	GCGC	1 cut(s)	322
AspS9I	GGNCC	3 cut(s)	11, 62, 63
AsuC2I	CCSGG	2 cut(s)	164, 342
AsuHPI	GGTGA	2 cut(s)	143, 356
BaeGI	GKGCMC	2 cut(s)	66, 108
BalI	TGGCCA	1 cut(s)	244
BamHI	GGATCC	1 cut(s)	337
BanI	GGYRCC	1 cut(s)	482
BanII	GRGCYC	1 cut(s)	66
BarI	GAAGNNNNNNTAC	2 cut(s)	351, 383
Bbv12I	GWGCWC	1 cut(s)	108
BceAI	ACGGC	3 cut(s)	100, 151, 163
BcnI	CCSGG	2 cut(s)	164, 342
BfaI	CTAG	1 cut(s)	333
BmcAI	AGTACT	1 cut(s)	379
Bme1390I	CCNGG	2 cut(s)	164, 342
BmgT120I	GGNCC	3 cut(s)	11, 62, 63
BmiI	GGNNCC	3 cut(s)	64, 339, 484
BmrFI	CCNGG	2 cut(s)	164, 342
BmsI	GCATC	2 cut(s)	197, 378
BpmI	CTGGAG	1 cut(s)	215
BpuMI	CCSGG	2 cut(s)	164, 342
Bsa29I	ATCGAT	1 cut(s)	120
BsaBI	GATNNNNATC	1 cut(s)	179
BsaJI	CCNNGG	1 cut(s)	163
Bse118I	RCCGGY	1 cut(s)	110
Bse8I	GATNNNNATC	1 cut(s)	179
BseCI	ATCGAT	1 cut(s)	120
BseDI	CCNNGG	1 cut(s)	163
BseJI	GATNNNNATC	1 cut(s)	179
BseMII	CTCAG	1 cut(s)	67
BseRI	GAGGAG	1 cut(s)	212
BseSI	GKGCMC	2 cut(s)	66, 108
BshFI	GGCC	3 cut(s)	13, 64, 244
BshNI	GGYRCC	1 cut(s)	482
BshVI	ATCGAT	1 cut(s)	120
BsiHKAI	GWGCWC	1 cut(s)	108
BsiSI	CCGG	3 cut(s)	111, 163, 342
BsmI	GAATGC	1 cut(s)	259
BsnI	GGCC	3 cut(s)	13, 64, 244
Bsp120I	GGGCCC	1 cut(s)	62
Bsp1286I	GDGCHC	2 cut(s)	66, 108
Bsp143I	GATC	4 cut(s)	117, 180, 207, 337
BspACI	CCGC	1 cut(s)	474
BspANI	GGCC	3 cut(s)	13, 64, 244
BspCNI	CTCAG	1 cut(s)	66
BspDI	ATCGAT	1 cut(s)	120
BspLI	GGNNCC	3 cut(s)	64, 339, 484
BspPI	GGATC	2 cut(s)	332, 345
BspT107I	GGYRCC	1 cut(s)	482
BsrFI	RCCGGY	1 cut(s)	110
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	1 cut(s)	163
BssMI	GATC	4 cut(s)	117, 180, 207, 337
Bst4CI	ACNGT	3 cut(s)	95, 131, 355
Bst6I	CTCTTC	2 cut(s)	198, 261
BstC8I	GCNNGC	2 cut(s)	108, 112
BstDEI	CTNAG	2 cut(s)	53, 453
BstHHI	GCGC	1 cut(s)	322
BstKTI	GATC	4 cut(s)	120, 183, 210, 340
BstMBI	GATC	4 cut(s)	117, 180, 207, 337
BstSCI	CCNGG	2 cut(s)	162, 340
BstSLI	GKGCMC	2 cut(s)	66, 108
BstX2I	RGATCY	1 cut(s)	337
BstYI	RGATCY	1 cut(s)	337
Bsu15I	ATCGAT	1 cut(s)	120
BsuRI	GGCC	3 cut(s)	13, 64, 244
BsuTUI	ATCGAT	1 cut(s)	120
Cac8I	GCNNGC	2 cut(s)	108, 112
CfoI	GCGC	1 cut(s)	322
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	3 cut(s)	11, 62, 63
ClaI	ATCGAT	1 cut(s)	120
Csp6I	GTAC	1 cut(s)	378
CviJI	RGCY	6 cut(s)	13, 23, 64, 244, 295, 452
CviKI_1	RGCY	6 cut(s)	13, 23, 64, 244, 295, 452
CviQI	GTAC	1 cut(s)	378
DdeI	CTNAG	2 cut(s)	53, 453
DpnI	GATC	4 cut(s)	119, 182, 209, 339
DpnII	GATC	4 cut(s)	117, 180, 207, 337
EaeI	YGGCCR	1 cut(s)	242
Eam1104I	CTCTTC	2 cut(s)	198, 261
EarI	CTCTTC	2 cut(s)	198, 261
Eco24I	GRGCYC	1 cut(s)	66
EcoO109I	RGGNCCY	1 cut(s)	62
EcoT38I	GRGCYC	1 cut(s)	66
FaiI	YATR	7 cut(s)	68, 78, 98, 239, 308, 330, 368
FriOI	GRGCYC	1 cut(s)	66
FspBI	CTAG	1 cut(s)	333
GlaI	GCGC	1 cut(s)	321
GsuI	CTGGAG	1 cut(s)	215
HaeIII	GGCC	3 cut(s)	13, 64, 244
HapII	CCGG	3 cut(s)	111, 163, 342
HhaI	GCGC	1 cut(s)	322
Hin6I	GCGC	1 cut(s)	320
HinP1I	GCGC	1 cut(s)	320
HinfI	GANTC	2 cut(s)	168, 175
HpaII	CCGG	3 cut(s)	111, 163, 342
HphI	GGTGA	2 cut(s)	143, 356
Hpy166II	GTNNAC	2 cut(s)	50, 106
Hpy188I	TCNGA	3 cut(s)	56, 180, 185
Hpy188III	TCNNGA	2 cut(s)	172, 194
Hpy8I	GTNNAC	2 cut(s)	50, 106
HpyAV	CCTTC	2 cut(s)	53, 169
HpyCH4III	ACNGT	3 cut(s)	95, 131, 355
HpyCH4V	TGCA	2 cut(s)	106, 257
HpyF3I	CTNAG	2 cut(s)	53, 453
HspAI	GCGC	1 cut(s)	320
KroI	GCCGGC	1 cut(s)	110
KroNI	GCCGGC	1 cut(s)	112
Kzo9I	GATC	4 cut(s)	117, 180, 207, 337
LpnPI	CCDG	8 cut(s)	124, 176, 179, 185, 355, 402, 416, 450
LweI	GCATC	2 cut(s)	197, 378
MaeI	CTAG	1 cut(s)	333
MaeIII	GTNAC	4 cut(s)	131, 143, 349, 412
MalI	GATC	4 cut(s)	119, 182, 209, 339
MboI	GATC	4 cut(s)	117, 180, 207, 337
MboII	GAAGA	7 cut(s)	164, 215, 275, 278, 406, 440, 452
MfeI	CAATTG	1 cut(s)	477
MflI	RGATCY	1 cut(s)	337
MhlI	GDGCHC	2 cut(s)	66, 108
MlsI	TGGCCA	1 cut(s)	244
MluCI	AATT	5 cut(s)	6, 26, 325, 406, 477
MluNI	TGGCCA	1 cut(s)	244
MnlI	CCTC	4 cut(s)	190, 193, 262, 266
Mox20I	TGGCCA	1 cut(s)	244
MreI	CGCCGGCG	1 cut(s)	110
MroNI	GCCGGC	1 cut(s)	110
MscI	TGGCCA	1 cut(s)	244
MseI	TTAA	2 cut(s)	18, 278
Msp20I	TGGCCA	1 cut(s)	244
MspI	CCGG	3 cut(s)	111, 163, 342
MspR9I	CCNGG	2 cut(s)	164, 342
MunI	CAATTG	1 cut(s)	477
Mva1269I	GAATGC	1 cut(s)	259
NaeI	GCCGGC	1 cut(s)	112
NciI	CCSGG	2 cut(s)	164, 342
NdeII	GATC	4 cut(s)	117, 180, 207, 337
NgoMIV	GCCGGC	1 cut(s)	110
NlaIV	GGNNCC	3 cut(s)	64, 339, 484
NmuCI	GTSAC	2 cut(s)	131, 143
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PctI	GAATGC	1 cut(s)	259
PdiI	GCCGGC	1 cut(s)	112
PfeI	GAWTC	2 cut(s)	168, 175
PshBI	ATTAAT	1 cut(s)	278
PspN4I	GGNNCC	3 cut(s)	64, 339, 484
PspOMI	GGGCCC	1 cut(s)	62
PspPI	GGNCC	3 cut(s)	11, 62, 63
PsuI	RGATCY	1 cut(s)	337
RsaI	GTAC	1 cut(s)	379
RsaNI	GTAC	1 cut(s)	378
SaqAI	TTAA	2 cut(s)	18, 278
Sau3AI	GATC	4 cut(s)	117, 180, 207, 337
Sau96I	GGNCC	3 cut(s)	11, 62, 63
ScaI	AGTACT	1 cut(s)	379
ScrFI	CCNGG	2 cut(s)	164, 342
SduI	GDGCHC	2 cut(s)	66, 108
SetI	ASST	5 cut(s)	105, 161, 297, 313, 488
SfaNI	GCATC	2 cut(s)	197, 378
SgrAI	CRCCGGYG	1 cut(s)	110
Sse9I	AATT	5 cut(s)	6, 26, 325, 406, 477
SsiI	CCGC	1 cut(s)	474
SspMI	CTAG	1 cut(s)	333
StyD4I	CCNGG	2 cut(s)	162, 340
TaaI	ACNGT	3 cut(s)	95, 131, 355
TaqI	TCGA	2 cut(s)	120, 297
TasI	AATT	5 cut(s)	6, 26, 325, 406, 477
TatI	WGTACW	1 cut(s)	377
TfiI	GAWTC	2 cut(s)	168, 175
Tru1I	TTAA	2 cut(s)	18, 278
Tru9I	TTAA	2 cut(s)	18, 278
TseFI	GTSAC	2 cut(s)	131, 143
Tsp45I	GTSAC	2 cut(s)	131, 143
VneI	GTGCAC	1 cut(s)	104
VspI	ATTAAT	1 cut(s)	278
XspI	CTAG	1 cut(s)	333
ZrmI	AGTACT	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.