Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0003414

Physical Location & Seq

Genomic Coordinates Reverse (-)

22538197 .. 22538789

Gene Structure 593 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g22410.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGCGATTGAATGAAAAAACTTCATTTTCATCACCAAAATCTGATTATTCGAAAGTGAATAAATCGTTCAAAGGAGTGAAAGACAAAGGCAAGCCAAAATTTTCCTTCTGTTTCAAGACTCAAAAGGAAGGACCCTCTTGCTTTTCTGTATCTAAAAACAAAAGTGATATGTCATTCAAGGTTCAACAAGTGCCTGAAATGTTGAAGGCAATTGAGCCCAGGACCGAAGAATATTTGGATTCTGAGCTTATTGAGGATATTCAAGGAGAAGAGGAAAATCAATTGGAGATTGTTCCTGTTGACGTTAATGAACTTGGACATGGATCTATTGAGCAGTCAATGGTGGAGCTTTTAGATGGCCTTCAAGATACGACAACTATGCTGAGAGGAAGATCTAAAATGGTTCTCTGTCTTCTTCTCTTCAAACATGTTTTTCTCTTCCTTTTCCCATTTACATTTTTCTGTTCCCTGTTTCATCTAGCTTTTGTTTCAGTATCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

167

Amino Acids

18.97

Weight (kDa)

5.96

Isoelectric Point (pI)

51.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02960 AT1G02960 AT1G02960 AT1G02960 AT1G02960 AT1G02960 AT1G02965
fragaria_vesca	FvH4_2g25160 FvH4_2g25160 FvH4_2g25160
malus_domestica	MD03G1283300.v1.1
prunus_persica	Prupe.8G256400_v2.0.a1 Prupe.8G256400_v2.0.a1 Prupe.8G256400_v2.0.a1 Prupe.8G256400_v2.0.a1 Prupe.8G256400_v2.0.a1 Prupe.8G256400_v2.0.a1 Prupe.8G256400_v2.0.a1
pyrus_communis	pycom03g22410
rosa_chinensis	RchiOBHm_Chr6g0293271
rosa_laevigata	RLG00000011962
rosa_multiflora	Rmu_ssc0000162.1_g000034
rosa_roxburghii	Rroxscaffold_7G00174290
rosa_rugosa	Rorug06G0233900 Rorug06G0234000 Rorug06G0234100 Rorug06G0234100 Rorug06G0234100 Rorug06G0234200
rosa_samantha	Rh6AG346900 Rh6AG347000 Rh6BG354300 Rh6CG360800 Rh6DG347300 Rh6DG347400
rosa_wichuraiana	Rw6G030200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	331
AcsI	RAATTY	1 cut(s)	98
AflIII	ACRYGT	1 cut(s)	427
AgsI	TTSAA	9 cut(s)	10, 70, 115, 178, 185, 205, 263, 365, 424
AjnI	CCWGG	1 cut(s)	218
AluBI	AGCT	3 cut(s)	247, 349, 482
AluI	AGCT	3 cut(s)	247, 349, 482
AlwI	GGATC	1 cut(s)	331
AoxI	GGCC	1 cut(s)	358
ApoI	RAATTY	1 cut(s)	98
AspS9I	GGNCC	2 cut(s)	131, 222
AsuHPI	GGTGA	1 cut(s)	24
AsuII	TTCGAA	1 cut(s)	50
AvaII	GGWCC	2 cut(s)	131, 222
BanII	GRGCYC	1 cut(s)	219
BbsI	GAAGAC	1 cut(s)	404
BccI	CCATC	1 cut(s)	350
BcgI	CGANNNNNNTGC	2 cut(s)	361, 395
BciT130I	CCWGG	1 cut(s)	220
BfaI	CTAG	1 cut(s)	479
BglII	AGATCT	1 cut(s)	392
Bme1390I	CCNGG	1 cut(s)	220
Bme18I	GGWCC	2 cut(s)	131, 222
BmgT120I	GGNCC	2 cut(s)	131, 222
BmiI	GGNNCC	1 cut(s)	133
BmrFI	CCNGG	1 cut(s)	220
BpiI	GAAGAC	1 cut(s)	404
Bpu14I	TTCGAA	1 cut(s)	50
BsaJI	CCNNGG	1 cut(s)	218
BseBI	CCWGG	1 cut(s)	220
BseDI	CCNNGG	1 cut(s)	218
BseMII	CTCAG	2 cut(s)	234, 374
BshFI	GGCC	1 cut(s)	360
BsnI	GGCC	1 cut(s)	360
Bsp119I	TTCGAA	1 cut(s)	50
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp143I	GATC	2 cut(s)	323, 392
BspANI	GGCC	1 cut(s)	360
BspCNI	CTCAG	2 cut(s)	235, 375
BspLI	GGNNCC	1 cut(s)	133
BspPI	GGATC	1 cut(s)	331
BspT104I	TTCGAA	1 cut(s)	50
BssECI	CCNNGG	1 cut(s)	218
BssMI	GATC	2 cut(s)	323, 392
Bst2UI	CCWGG	1 cut(s)	220
Bst6I	CTCTTC	3 cut(s)	264, 425, 443
BstBI	TTCGAA	1 cut(s)	50
BstC8I	GCNNGC	1 cut(s)	92
BstDEI	CTNAG	2 cut(s)	243, 383
BstKTI	GATC	2 cut(s)	326, 395
BstMBI	GATC	2 cut(s)	323, 392
BstNI	CCWGG	1 cut(s)	220
BstNSI	RCATGY	1 cut(s)	431
BstSCI	CCNGG	1 cut(s)	218
BstV2I	GAAGAC	1 cut(s)	404
BstX2I	RGATCY	2 cut(s)	323, 392
BstYI	RGATCY	2 cut(s)	323, 392
BsuRI	GGCC	1 cut(s)	360
Cac8I	GCNNGC	1 cut(s)	92
Cfr13I	GGNCC	2 cut(s)	131, 222
CviAII	CATG	2 cut(s)	320, 428
CviJI	RGCY	6 cut(s)	94, 217, 247, 349, 360, 482
CviKI_1	RGCY	6 cut(s)	94, 217, 247, 349, 360, 482
DdeI	CTNAG	2 cut(s)	243, 383
DpnI	GATC	2 cut(s)	325, 394
DpnII	GATC	2 cut(s)	323, 392
Eam1104I	CTCTTC	3 cut(s)	264, 425, 443
EarI	CTCTTC	3 cut(s)	264, 425, 443
Eco24I	GRGCYC	1 cut(s)	219
Eco47I	GGWCC	2 cut(s)	131, 222
EcoO109I	RGGNCCY	1 cut(s)	131
EcoRII	CCWGG	1 cut(s)	218
EcoT38I	GRGCYC	1 cut(s)	219
FaeI	CATG	2 cut(s)	323, 431
FaiI	YATR	4 cut(s)	170, 321, 380, 429
FatI	CATG	2 cut(s)	319, 427
FriOI	GRGCYC	1 cut(s)	219
FspBI	CTAG	1 cut(s)	479
HaeIII	GGCC	1 cut(s)	360
Hin1II	CATG	2 cut(s)	323, 431
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
HinfI	GANTC	2 cut(s)	118, 239
HphI	GGTGA	1 cut(s)	24
Hpy166II	GTNNAC	1 cut(s)	301
Hpy188I	TCNGA	2 cut(s)	43, 244
Hpy188III	TCNNGA	2 cut(s)	115, 365
Hpy8I	GTNNAC	1 cut(s)	301
HpyAV	CCTTC	4 cut(s)	115, 122, 199, 371
HpyCH4IV	ACGT	1 cut(s)	303
HpyF3I	CTNAG	2 cut(s)	243, 383
HpySE526I	ACGT	1 cut(s)	303
Hsp92II	CATG	2 cut(s)	323, 431
Kzo9I	GATC	2 cut(s)	323, 392
LmnI	GCTCC	1 cut(s)	346
LpnPI	CCDG	5 cut(s)	205, 207, 232, 309, 482
MaeI	CTAG	1 cut(s)	479
MaeII	ACGT	1 cut(s)	303
MalI	GATC	2 cut(s)	325, 394
MboI	GATC	2 cut(s)	323, 392
MboII	GAAGA	7 cut(s)	239, 281, 402, 404, 407, 412, 430
MfeI	CAATTG	2 cut(s)	210, 281
MflI	RGATCY	2 cut(s)	323, 392
MhlI	GDGCHC	1 cut(s)	219
MluCI	AATT	3 cut(s)	98, 210, 281
MlyI	GAGTC	1 cut(s)	112
MnlI	CCTC	4 cut(s)	145, 247, 265, 380
MseI	TTAA	1 cut(s)	306
MspR9I	CCNGG	1 cut(s)	220
MunI	CAATTG	2 cut(s)	210, 281
MvaI	CCWGG	1 cut(s)	220
NdeII	GATC	2 cut(s)	323, 392
NlaIII	CATG	2 cut(s)	323, 431
NlaIV	GGNNCC	1 cut(s)	133
NspI	RCATGY	1 cut(s)	431
NspV	TTCGAA	1 cut(s)	50
PciI	ACATGT	1 cut(s)	427
PfeI	GAWTC	1 cut(s)	239
PleI	GAGTC	1 cut(s)	112
PpsI	GAGTC	1 cut(s)	112
PpuMI	RGGWCCY	1 cut(s)	131
PscI	ACATGT	1 cut(s)	427
Psp5II	RGGWCCY	1 cut(s)	131
Psp6I	CCWGG	1 cut(s)	218
PspGI	CCWGG	1 cut(s)	218
PspN4I	GGNNCC	1 cut(s)	133
PspPI	GGNCC	2 cut(s)	131, 222
PspPPI	RGGWCCY	1 cut(s)	131
PsuI	RGATCY	2 cut(s)	323, 392
SaqAI	TTAA	1 cut(s)	306
Sau3AI	GATC	2 cut(s)	323, 392
Sau96I	GGNCC	2 cut(s)	131, 222
SchI	GAGTC	1 cut(s)	112
ScrFI	CCNGG	1 cut(s)	220
SduI	GDGCHC	1 cut(s)	219
SetI	ASST	5 cut(s)	183, 249, 306, 351, 484
SfuI	TTCGAA	1 cut(s)	50
SinI	GGWCC	2 cut(s)	131, 222
Sse9I	AATT	3 cut(s)	98, 210, 281
SspI	AATATT	1 cut(s)	233
SspMI	CTAG	1 cut(s)	479
StyD4I	CCNGG	1 cut(s)	218
TaiI	ACGT	1 cut(s)	306
TaqI	TCGA	1 cut(s)	50
TaqII	GACCGA	1 cut(s)	239
TasI	AATT	3 cut(s)	98, 210, 281
TfiI	GAWTC	1 cut(s)	239
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TspDTI	ATGAA	5 cut(s)	12, 18, 27, 324, 464
VpaK11BI	GGWCC	2 cut(s)	131, 222
XapI	RAATTY	1 cut(s)	98
XceI	RCATGY	1 cut(s)	431
XspI	CTAG	1 cut(s)	479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.