FvH4_2g25160

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
20514504 .. 20518068
3565 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g25160.t1

Sequence Viewer

Length: 1470 bp
ATGGCCTGGTTTCAGACAATTCCAGAGTCTGATCAGAGCATCTCTGATGAGGAAGAACCGGACCGAAATCGTGAAAACAAATGCCACGCGCTCGGTGTAACCACACAGAAAAAGGAATTATTTCAAATTTCATCACGGCTAGAAATGCTCAAAGGTGCGGGTGCGGATGTGAATACAAATGTGAAGGCCTGCAATTTGGAAGATGAAGTTAGCTCTGATGACGAGGCGAACAATGTGGTGTCAAATGTTTCTGTTAATGGTGGTGCTAAAGAGTTACGAAAAGTGGATGTTCATAGCTTTTGGGGCGGTAAACAAGATGAATTATACTCATGGTCAGCTGCGAATAAAGAGGCTGAGGCACTCATCCGTCTGAATGAGAGAACTTCTTGCTCTTCGTCACTTTCTGGCTACTCCAACGTGAAAAAATCGTCCAAAGGAGCCAAAGGCAAAGGAAAACCAAAATTTTCGTTCCGTTTTCCGGCACACAAGGAAGGAACCTCATCCCTTTCTATATATAAGAATGACAGTGATGTGTCACTCAAGGTTCAAGAACTGCCTGAAAGGTTGGATGCAATTGAGTCTAGAAATGAAGATCATTCAGATGTGGAACTTATTGAGGATATTCTGGGGGAAGAGGAAGCCGAGATTGTGCTTAGAAATGAAGAACATTCAAATGTTGAATTTCATGAGGATATTTCTGTGGATGAGGAAGGTGCGTTAGACATTGTGCCTATTGACGCCAAGGCTATTGGGCATGGATGTATGGGGCAATCAATGGCTGAGCTTCTAGATGGCCTTCAAGATAAGACAACTATTCTGAGAGGACATTCTAGAAAGTATGCTAGAAAACGACGTAAAAGGGAGCAGCCTGTTGTAAAGTGTCTATCTCCTCTGAGAGATGGAACTATTGACAGTGAAAGCTCTCCCGAGCACTTGGGTCATGGATTGTCTAGTGATATCAAGATTGATGATCAAAGTTTGGAGCTTGCTATTCCAGAGATGAAGAGGCAGACATTGGTAGATCGATTTCAGGAAGCTATCAATGACCGAGTCATTGTTGCAGTGCCCAAAACTTTGAAGAACGGATTATTTGGGAAACTGCAGCATGTGGTACAGAGTGAGAGAGATAGCGATATGGAATTCTTGAAGAAGATCCAGGAGGGAGCTAGTGAAACTAACGAACCAAACTGCATGGATGTGAAAATTCTTTCGAAGTATCTGGATGCAAAGCTTACCGTGTGTCACTGCTCCTTTGGCAAGAACTCAAAGAATCTCCCATGTCCAGATATCAGCGAAGAAATGGTTGATGAAGGACCGGAAAAGAGCATAATTTTCAATCCACGAGTTTGCAATGATATTGACCTTGATATTGGGAAATGGATTCGTATACACCCTCCATGGAAGGAGATTTGTGTGGCTACTGGTCAAAACATAATCCTGTCGACATATTTCTCTGAAATTGTAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

490

Amino Acids

54.63

Weight (kDa)

5.09

Isoelectric Point (pI)

47.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 1387, 1442
AccII CGCG 1 cut(s) 89
AciI CCGC 3 cut(s) 158, 164, 306
AclWI GGATC 1 cut(s) 1147
AcsI RAATTY 5 cut(s) 126, 461, 680, 1139, 1203
AcyI GRCGYC 1 cut(s) 738
AfaI GTAC 1 cut(s) 1113
AfiI CCNNNNNNNGG 1 cut(s) 478
AgsI TTSAA 8 cut(s) 125, 548, 672, 680, 800, 1078, 1147, 1336
AjnI CCWGG 2 cut(s) 5, 1155
AluBI AGCT 9 cut(s) 213, 297, 338, 784, 921, 985, 1037, 1166, 1231
AluI AGCT 9 cut(s) 213, 297, 338, 784, 921, 985, 1037, 1166, 1231
Alw21I GWGCWC 1 cut(s) 933
AlwI GGATC 1 cut(s) 1147
AlwNI CAGNNNCTG 1 cut(s) 29
Ama87I CYCGRG 1 cut(s) 926
AoxI GGCC 3 cut(s) 3, 186, 793
ApeKI GCWGC 3 cut(s) 338, 865, 1102
ApoI RAATTY 5 cut(s) 126, 461, 680, 1139, 1203
Asp700I GAANNNNTTC 1 cut(s) 120
AspLEI GCGC 1 cut(s) 91
AspS9I GGNCC 2 cut(s) 61, 1313
AsuII TTCGAA 1 cut(s) 1211
AvaI CYCGRG 1 cut(s) 926
AvaII GGWCC 2 cut(s) 61, 1313
BaeGI GKGCMC 1 cut(s) 1068
BauI CACGAG 1 cut(s) 1341
Bbv12I GWGCWC 1 cut(s) 933
BbvCI CCTCAGC 1 cut(s) 354
BbvI GCAGC 3 cut(s) 325, 877, 1114
BccI CCATC 2 cut(s) 785, 893
BceAI ACGGC 1 cut(s) 152
BciT130I CCWGG 2 cut(s) 7, 1157
BclI TGATCA 2 cut(s) 31, 970
BfaI CTAG 7 cut(s) 140, 582, 788, 831, 843, 951, 1167
BfmI CTRYAG 1 cut(s) 1100
BisI GCNGC 3 cut(s) 339, 866, 1103
BlpI GCTNAGC 1 cut(s) 780
BlsI GCNGC 3 cut(s) 340, 867, 1104
Bme1390I CCNGG 2 cut(s) 7, 1157
Bme18I GGWCC 2 cut(s) 61, 1313
BmeT110I CYCGRG 1 cut(s) 926
BmgT120I GGNCC 2 cut(s) 61, 1313
BmiI GGNNCC 2 cut(s) 439, 496
BmrFI CCNGG 2 cut(s) 7, 1157
BmsI GCATC 3 cut(s) 48, 559, 1213
Bpu10I CCTNAGC 1 cut(s) 354
Bpu1102I GCTNAGC 1 cut(s) 780
Bpu14I TTCGAA 1 cut(s) 1211
BpuEI CTTGAG 1 cut(s) 524
Bsa29I ATCGAT 1 cut(s) 1024
BsaHI GRCGYC 1 cut(s) 738
BsaJI CCNNGG 2 cut(s) 741, 1397
BsaWI WCCGGW 2 cut(s) 58, 1315
Bsc4I CCNNNNNNNGG 1 cut(s) 478
Bse1I ACTGG 1 cut(s) 1426
Bse3DI GCAATG 1 cut(s) 1357
BseBI CCWGG 2 cut(s) 7, 1157
BseCI ATCGAT 1 cut(s) 1024
BseDI CCNNGG 2 cut(s) 741, 1397
BseGI GGATG 9 cut(s) 172, 292, 363, 500, 574, 709, 764, 1201, 1228
BseLI CCNNNNNNNGG 1 cut(s) 478
BseMI GCAATG 1 cut(s) 1357
BseMII CTCAG 4 cut(s) 345, 771, 809, 884
BseNI ACTGG 1 cut(s) 1426
BseRI GAGGAG 1 cut(s) 879
BseSI GKGCMC 1 cut(s) 1068
BseXI GCAGC 3 cut(s) 325, 877, 1114
Bsh1236I CGCG 1 cut(s) 89
BshFI GGCC 3 cut(s) 5, 188, 795
BshVI ATCGAT 1 cut(s) 1024
BsiHKAI GWGCWC 1 cut(s) 933
BsiHKCI CYCGRG 1 cut(s) 926
BsiSI CCGG 3 cut(s) 59, 479, 1316
BslI CCNNNNNNNGG 1 cut(s) 478
BsnI GGCC 3 cut(s) 5, 188, 795
BsoBI CYCGRG 1 cut(s) 926
Bsp119I TTCGAA 1 cut(s) 1211
Bsp1286I GDGCHC 2 cut(s) 933, 1068
Bsp143I GATC 5 cut(s) 31, 592, 970, 1021, 1152
Bsp1720I GCTNAGC 1 cut(s) 780
Bsp19I CCATGG 1 cut(s) 1397
BspACI CCGC 3 cut(s) 158, 164, 306
BspANI GGCC 3 cut(s) 5, 188, 795
BspCNI CTCAG 4 cut(s) 346, 772, 810, 885
BspDI ATCGAT 1 cut(s) 1024
BspFNI CGCG 1 cut(s) 89
BspHI TCATGA 1 cut(s) 685
BspLI GGNNCC 2 cut(s) 439, 496
BspMAI CTGCAG 1 cut(s) 1104
BspPI GGATC 1 cut(s) 1147
BspQI GCTCTTC 1 cut(s) 397
BspT104I TTCGAA 1 cut(s) 1211
BsrDI GCAATG 1 cut(s) 1357
BsrI ACTGG 1 cut(s) 1426
BssECI CCNNGG 2 cut(s) 741, 1397
BssMI GATC 5 cut(s) 31, 592, 970, 1021, 1152
BssNAI GTATAC 1 cut(s) 1388
BssNI GRCGYC 1 cut(s) 738
BssSI CACGAG 1 cut(s) 1341
BssT1I CCWWGG 2 cut(s) 741, 1397
Bst1107I GTATAC 1 cut(s) 1388
Bst2BI CACGAG 1 cut(s) 1341
Bst2UI CCWGG 2 cut(s) 7, 1157
Bst4CI ACNGT 3 cut(s) 527, 914, 1237
Bst6I CTCTTC 3 cut(s) 397, 627, 998
BstACI GRCGYC 1 cut(s) 738
BstBI TTCGAA 1 cut(s) 1211
BstC8I GCNNGC 2 cut(s) 190, 987
BstDEI CTNAG 5 cut(s) 354, 653, 780, 818, 893
BstDSI CCRYGG 1 cut(s) 1397
BstF5I GGATG 9 cut(s) 172, 292, 363, 500, 574, 709, 764, 1201, 1228
BstFNI CGCG 1 cut(s) 89
BstHHI GCGC 1 cut(s) 91
BstKTI GATC 5 cut(s) 34, 595, 973, 1024, 1155
BstMBI GATC 5 cut(s) 31, 592, 970, 1021, 1152
BstMWI GCNNNNNNNGC 3 cut(s) 145, 303, 1254
BstNI CCWGG 2 cut(s) 7, 1157
BstNSI RCATGY 1 cut(s) 1109
BstSCI CCNGG 2 cut(s) 5, 1155
BstSFI CTRYAG 1 cut(s) 1100
BstSLI GKGCMC 1 cut(s) 1068
BstUI CGCG 1 cut(s) 89
BstV1I GCAGC 3 cut(s) 325, 877, 1114
BstX2I RGATCY 1 cut(s) 1152
BstYI RGATCY 1 cut(s) 1152
BstZ17I GTATAC 1 cut(s) 1388
Bsu15I ATCGAT 1 cut(s) 1024
BsuRI GGCC 3 cut(s) 5, 188, 795
BsuTUI ATCGAT 1 cut(s) 1024
BtgI CCRYGG 1 cut(s) 1397
BtsCI GGATG 9 cut(s) 172, 292, 363, 500, 574, 709, 764, 1201, 1228
BtsI GCAGTG 2 cut(s) 1068, 1243
BtsIMutI CAGTG 4 cut(s) 532, 919, 1068, 1243
Cac8I GCNNGC 2 cut(s) 190, 987
CaiI CAGNNNCTG 1 cut(s) 29
CciI TCATGA 1 cut(s) 685
CfoI GCGC 1 cut(s) 91
Cfr13I GGNCC 2 cut(s) 61, 1313
ClaI ATCGAT 1 cut(s) 1024
CpoI CGGWCCG 1 cut(s) 61
CseI GACGC 1 cut(s) 746
Csp6I GTAC 1 cut(s) 1112
CspI CGGWCCG 1 cut(s) 61
CviAII CATG 8 cut(s) 330, 686, 755, 941, 1106, 1192, 1278, 1398
CviQI GTAC 1 cut(s) 1112
DdeI CTNAG 5 cut(s) 354, 653, 780, 818, 893
DpnI GATC 5 cut(s) 33, 594, 972, 1023, 1154
DpnII GATC 5 cut(s) 31, 592, 970, 1021, 1152
Eam1104I CTCTTC 3 cut(s) 397, 627, 998
EarI CTCTTC 3 cut(s) 397, 627, 998
Eco130I CCWWGG 2 cut(s) 741, 1397
Eco147I AGGCCT 1 cut(s) 188
Eco32I GATATC 2 cut(s) 958, 1288
Eco47I GGWCC 2 cut(s) 61, 1313
Eco88I CYCGRG 1 cut(s) 926
EcoRI GAATTC 1 cut(s) 1139
EcoRII CCWGG 2 cut(s) 5, 1155
EcoRV GATATC 2 cut(s) 958, 1288
EcoT14I CCWWGG 2 cut(s) 741, 1397
ErhI CCWWGG 2 cut(s) 741, 1397
FaeI CATG 8 cut(s) 333, 689, 758, 944, 1109, 1195, 1281, 1401
FatI CATG 8 cut(s) 329, 685, 754, 940, 1105, 1191, 1277, 1397
FauI CCCGC 1 cut(s) 151
FbaI TGATCA 2 cut(s) 31, 970
FblI GTMKAC 2 cut(s) 1387, 1442
Fnu4HI GCNGC 3 cut(s) 339, 866, 1103
FokI GGATG 9 cut(s) 179, 299, 350, 487, 581, 716, 771, 1208, 1235
Fsp4HI GCNGC 3 cut(s) 339, 866, 1103
FspBI CTAG 7 cut(s) 140, 582, 788, 831, 843, 951, 1167
GlaI GCGC 1 cut(s) 90
GluI GCNGC 3 cut(s) 339, 866, 1103
HaeIII GGCC 3 cut(s) 5, 188, 795
HapII CCGG 3 cut(s) 59, 479, 1316
HgaI GACGC 1 cut(s) 746
HhaI GCGC 1 cut(s) 91
Hin1I GRCGYC 1 cut(s) 738
Hin1II CATG 8 cut(s) 333, 689, 758, 944, 1109, 1195, 1281, 1401
Hin6I GCGC 1 cut(s) 89
HinP1I GCGC 1 cut(s) 89
HincII GTYRAC 1 cut(s) 1443
HindII GTYRAC 1 cut(s) 1443
HindIII AAGCTT 1 cut(s) 1229
HinfI GANTC 5 cut(s) 26, 578, 1050, 1270, 1381
HpaII CCGG 3 cut(s) 59, 479, 1316
Hpy166II GTNNAC 3 cut(s) 311, 1388, 1443
Hpy8I GTNNAC 3 cut(s) 311, 1388, 1443
Hpy99I CGWCG 1 cut(s) 855
HpyAV CCTTC 6 cut(s) 178, 485, 704, 806, 1304, 1396
HpyCH4III ACNGT 3 cut(s) 527, 914, 1237
HpyCH4IV ACGT 2 cut(s) 417, 853
HpyCH4V TGCA 7 cut(s) 192, 572, 1061, 1102, 1191, 1226, 1350
HpyF10VI GCNNNNNNNGC 3 cut(s) 145, 303, 1254
HpyF3I CTNAG 5 cut(s) 354, 653, 780, 818, 893
HpySE526I ACGT 2 cut(s) 417, 853
Hsp92I GRCGYC 1 cut(s) 738
Hsp92II CATG 8 cut(s) 333, 689, 758, 944, 1109, 1195, 1281, 1401
HspAI GCGC 1 cut(s) 89
Ksp22I TGATCA 2 cut(s) 31, 970
Kzo9I GATC 5 cut(s) 31, 592, 970, 1021, 1152
LguI GCTCTTC 1 cut(s) 397
LmnI GCTCC 5 cut(s) 437, 862, 982, 1163, 1253
Lsp1109I GCAGC 3 cut(s) 325, 877, 1114
LweI GCATC 3 cut(s) 48, 559, 1213
MaeI CTAG 7 cut(s) 140, 582, 788, 831, 843, 951, 1167
MaeII ACGT 2 cut(s) 417, 853
MaeIII GTNAC 5 cut(s) 97, 273, 396, 534, 1241
MalI GATC 5 cut(s) 33, 594, 972, 1023, 1154
MboI GATC 5 cut(s) 31, 592, 970, 1021, 1152
MfeI CAATTG 1 cut(s) 573
MflI RGATCY 1 cut(s) 1152
MhlI GDGCHC 2 cut(s) 933, 1068
MlyI GAGTC 3 cut(s) 35, 587, 1059
MmeI TCCRAC 2 cut(s) 438, 546
MroXI GAANNNNTTC 1 cut(s) 120
MseI TTAA 1 cut(s) 255
MslI CAYNNNNRTG 3 cut(s) 600, 672, 1196
MspA1I CMGCKG 1 cut(s) 338
MspI CCGG 3 cut(s) 59, 479, 1316
MspR9I CCNGG 2 cut(s) 7, 1157
MunI CAATTG 1 cut(s) 573
MvaI CCWGG 2 cut(s) 7, 1157
MvnI CGCG 1 cut(s) 89
MwoI GCNNNNNNNGC 3 cut(s) 145, 303, 1254
NcoI CCATGG 1 cut(s) 1397
NdeII GATC 5 cut(s) 31, 592, 970, 1021, 1152
NlaIII CATG 8 cut(s) 333, 689, 758, 944, 1109, 1195, 1281, 1401
NlaIV GGNNCC 2 cut(s) 439, 496
NmeAIII GCCGAG 1 cut(s) 667
NmuCI GTSAC 3 cut(s) 396, 534, 1241
NspI RCATGY 1 cut(s) 1109
NspV TTCGAA 1 cut(s) 1211
PagI TCATGA 1 cut(s) 685
PceI AGGCCT 1 cut(s) 188
PciSI GCTCTTC 1 cut(s) 397
PdmI GAANNNNTTC 1 cut(s) 120
PfeI GAWTC 2 cut(s) 1270, 1381
PflFI GACNNNGTC 1 cut(s) 1049
PfoI TCCNGGA 1 cut(s) 1155
PkrI GCNGC 3 cut(s) 340, 867, 1104
PleI GAGTC 3 cut(s) 34, 586, 1058
PpsI GAGTC 3 cut(s) 34, 586, 1058
Psp6I CCWGG 2 cut(s) 5, 1155
PspGI CCWGG 2 cut(s) 5, 1155
PspN4I GGNNCC 2 cut(s) 439, 496
PspPI GGNCC 2 cut(s) 61, 1313
PstI CTGCAG 1 cut(s) 1104
PstNI CAGNNNCTG 1 cut(s) 29
PsuI RGATCY 1 cut(s) 1152
PsyI GACNNNGTC 1 cut(s) 1049
PvuII CAGCTG 1 cut(s) 338
RsaI GTAC 1 cut(s) 1113
RsaNI GTAC 1 cut(s) 1112
RseI CAYNNNNRTG 3 cut(s) 600, 672, 1196
Rsr2I CGGWCCG 1 cut(s) 61
RsrII CGGWCCG 1 cut(s) 61
SalI GTCGAC 1 cut(s) 1441
SapI GCTCTTC 1 cut(s) 397
SaqAI TTAA 1 cut(s) 255
SatI GCNGC 3 cut(s) 339, 866, 1103
Sau3AI GATC 5 cut(s) 31, 592, 970, 1021, 1152
Sau96I GGNCC 2 cut(s) 61, 1313
SchI GAGTC 3 cut(s) 35, 587, 1059
ScrFI CCNGG 2 cut(s) 7, 1157
SduI GDGCHC 2 cut(s) 933, 1068
SfaNI GCATC 3 cut(s) 48, 559, 1213
SfcI CTRYAG 1 cut(s) 1100
SfuI TTCGAA 1 cut(s) 1211
SinI GGWCC 2 cut(s) 61, 1313
SmiMI CAYNNNNRTG 3 cut(s) 600, 672, 1196
SmlI CTYRAG 1 cut(s) 539
SmoI CTYRAG 1 cut(s) 539
SseBI AGGCCT 1 cut(s) 188
SsiI CCGC 3 cut(s) 158, 164, 306
SspMI CTAG 7 cut(s) 140, 582, 788, 831, 843, 951, 1167
StuI AGGCCT 1 cut(s) 188
StyD4I CCNGG 2 cut(s) 5, 1155
StyI CCWWGG 2 cut(s) 741, 1397
TaaI ACNGT 3 cut(s) 527, 914, 1237
TaiI ACGT 2 cut(s) 420, 856
TaqI TCGA 3 cut(s) 1024, 1211, 1442
TaqII GACCGA 2 cut(s) 78, 1062
TfiI GAWTC 2 cut(s) 1270, 1381
Tru1I TTAA 1 cut(s) 255
Tru9I TTAA 1 cut(s) 255
TscAI CASTG 4 cut(s) 532, 919, 1068, 1250
TseFI GTSAC 3 cut(s) 396, 534, 1241
TseI GCWGC 3 cut(s) 338, 865, 1102
Tsp45I GTSAC 3 cut(s) 396, 534, 1241
TspDTI ATGAA 9 cut(s) 120, 219, 281, 333, 603, 674, 675, 1016, 1323
TspGWI ACGGA 3 cut(s) 356, 461, 1098
TspRI CASTG 4 cut(s) 532, 919, 1068, 1250
Tth111I GACNNNGTC 1 cut(s) 1049
VpaK11BI GGWCC 2 cut(s) 61, 1313
XapI RAATTY 5 cut(s) 126, 461, 680, 1139, 1203
XbaI TCTAGA 3 cut(s) 581, 787, 830
XceI RCATGY 1 cut(s) 1109
XmiI GTMKAC 2 cut(s) 1387, 1442
XmnI GAANNNNTTC 1 cut(s) 120
XspI CTAG 7 cut(s) 140, 582, 788, 831, 843, 951, 1167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.