Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0003414

Physical Location & Seq

Genomic Coordinates Forward (+)

54403732 .. 54410093

Gene Structure 6362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G030200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGGGCCCTTGCCCGCTCTGGAGGGAAGGAAACCCTCACTTAAAAATTTCTCTCACTTGTAACGAAAACAATAACAAATCATCCATAAAGGCTAATTTTAAGATCAAATTGTTGTTAGTTCCAACCAAAATTTTTGACTTTATTCCGGTGGCAGGTGACAGGAATCTGGCGACCCCGGTGTTGTTTGTTTCGAAAACAGGTGCGAATGCGAAGGCTTGCAATTTGGAAGATGAAGTTAGCTCTGACTATGAGGTGAACAATGTGGTGTCAAAAGTTTCTGTTAATGGCGGTGCTAAAGAGTTGCAAAAAAAAGAGGATGTTCATAGCTTTTGGAGCGATAAACAAGACGAATTACACTCGTGGTCTGCTGTGAGTAAAGAAGCTGAGGCACTCATGCGTTTGAATGAAAAAACTTCTTGCTCATTGTCGCTGTCTGCTTACTCGAATTTAAAGAAATCGTCTAAAGGAGCCAAAGGCAAAGGCAAACCAAAATTTTTGTTCCGTTTTCCGACACACAAGGAAGGAACCTCGTCCCATTCTATATCTAAGAATGATAGTGATGTGTCATTCAGGGTTCAAGAACTGCCTGAAAGGTTGGATGCAATTGAGCCTAGAAATATAGATCATTCAGATGTTGAACTTATTGAGGATATTCAGGGGGAAGAGGAATCAGAGATTGTGCTTAGAAATGAAGAACATTCAGATGTTGAACTTCTTGAGGACATTTCAGGGGAAGAGGAAAGTTTGTTAGAGGTTGTGCCTTTTGAAGCCAAGGCTATTCGGCATGGATGTATGGGGCAGTCAATGGCTGAGCTTCTAGATGGCCTTCAAGATAAGACGACTATTTGGAGAAAAAGTTCTAGAAAGCATAGTAGAAAACGACGTAAAAGGGAGCAGCCTGTTGTAAAGTGTGCATCTCCTCTGGGAGATGGAACTTTTGACATTGAAAGCTCTCCTGAGCACTTGGGTCATGGATTGCCAAGTGATATCAAGATTGATGATCAAATTTTGAAGCTTGCTGATCCAGAAATGAAGAGGCAGACATTGGTAGATCGATTTCAGGAAGCTATGAGTGACAGACTCCTTGTTGCAGTGCCCAAAACTTTAAAGAGTGGATTATTTGGGAAACTGCAGCAGGTGGTGCAGAGTGAGAAAGAAACTGATATAGAATTCTTGAAGAACCAGGAGGGAGCTAGCGAAAGTAGTAGTGCCTTGCAATGGCTCTATTTTTCTTTCTATTTTATTTTAGAGAAATATTTTGTTCATGAAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

424

Amino Acids

47.72

Weight (kDa)

5.68

Isoelectric Point (pI)

51.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02960 AT1G02960 AT1G02960 AT1G02960 AT1G02960 AT1G02960 AT1G02965
fragaria_vesca	FvH4_2g25160 FvH4_2g25160 FvH4_2g25160
malus_domestica	MD03G1283300.v1.1
prunus_persica	Prupe.8G256400_v2.0.a1 Prupe.8G256400_v2.0.a1 Prupe.8G256400_v2.0.a1 Prupe.8G256400_v2.0.a1 Prupe.8G256400_v2.0.a1 Prupe.8G256400_v2.0.a1 Prupe.8G256400_v2.0.a1
pyrus_communis	pycom03g22410
rosa_chinensis	RchiOBHm_Chr6g0293271
rosa_laevigata	RLG00000011962
rosa_multiflora	Rmu_ssc0000162.1_g000034
rosa_roxburghii	Rroxscaffold_7G00174290
rosa_rugosa	Rorug06G0233900 Rorug06G0234000 Rorug06G0234100 Rorug06G0234100 Rorug06G0234100 Rorug06G0234200
rosa_samantha	Rh6AG346900 Rh6AG347000 Rh6BG354300 Rh6CG360800 Rh6DG347300 Rh6DG347400
rosa_wichuraiana	Rw6G030200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	143, 1126
Acc36I	ACCTGC	2 cut(s)	143, 1126
AccBSI	CCGCTC	1 cut(s)	16
AciI	CCGC	2 cut(s)	14, 288
AclWI	GGATC	1 cut(s)	1016
AcsI	RAATTY	6 cut(s)	45, 129, 445, 491, 1005, 1169
AfiI	CCNNNNNNNGG	2 cut(s)	152, 1218
AgsI	TTSAA	9 cut(s)	403, 578, 638, 710, 767, 830, 947, 1012, 1177
AjnI	CCWGG	1 cut(s)	1182
AloI	GAACNNNNNNTCC	2 cut(s)	841, 873
AluBI	AGCT	8 cut(s)	240, 327, 383, 814, 951, 1015, 1067, 1193
AluI	AGCT	8 cut(s)	240, 327, 383, 814, 951, 1015, 1067, 1193
Alw21I	GWGCWC	1 cut(s)	963
AlwI	GGATC	1 cut(s)	1016
AoxI	GGCC	2 cut(s)	4, 823
ApaI	GGGCCC	1 cut(s)	8
ApeKI	GCWGC	2 cut(s)	895, 1132
ApoI	RAATTY	6 cut(s)	45, 129, 445, 491, 1005, 1169
Asp700I	GAANNNNTTC	1 cut(s)	856
AspS9I	GGNCC	2 cut(s)	4, 5
AsuC2I	CCSGG	1 cut(s)	176
AsuHPI	GGTGA	2 cut(s)	167, 265
AsuII	TTCGAA	1 cut(s)	191
AsuNHI	GCTAGC	1 cut(s)	1193
BaeGI	GKGCMC	2 cut(s)	8, 1098
BanII	GRGCYC	1 cut(s)	8
BauI	CACGAG	1 cut(s)	358
Bbv12I	GWGCWC	1 cut(s)	963
BbvCI	CCTCAGC	1 cut(s)	384
BbvI	GCAGC	2 cut(s)	907, 1144
BccI	CCATC	2 cut(s)	815, 923
BciT130I	CCWGG	1 cut(s)	1184
BclI	TGATCA	1 cut(s)	1000
BcnI	CCSGG	1 cut(s)	176
BfaI	CTAG	4 cut(s)	612, 818, 861, 1194
BfmI	CTRYAG	1 cut(s)	1130
BfuAI	ACCTGC	2 cut(s)	143, 1126
BisI	GCNGC	2 cut(s)	896, 1133
BlpI	GCTNAGC	1 cut(s)	810
BlsI	GCNGC	2 cut(s)	897, 1134
Bme1390I	CCNGG	2 cut(s)	176, 1184
BmgT120I	GGNCC	2 cut(s)	4, 5
BmiI	GGNNCC	3 cut(s)	6, 469, 526
BmrFI	CCNGG	2 cut(s)	176, 1184
BmsI	GCATC	2 cut(s)	589, 923
BmtI	GCTAGC	1 cut(s)	1197
BpmI	CTGGAG	1 cut(s)	40
Bpu10I	CCTNAGC	2 cut(s)	384, 957
Bpu1102I	GCTNAGC	1 cut(s)	810
Bpu14I	TTCGAA	1 cut(s)	191
BpuEI	CTTGAG	1 cut(s)	737
BpuMI	CCSGG	1 cut(s)	176
Bsa29I	ATCGAT	1 cut(s)	1054
BsaJI	CCNNGG	2 cut(s)	174, 771
BsaWI	WCCGGW	1 cut(s)	145
BsaXI	ACNNNNNCTCC	2 cut(s)	841, 871
Bsc4I	CCNNNNNNNGG	2 cut(s)	152, 1218
Bse3DI	GCAATG	1 cut(s)	1223
BseBI	CCWGG	1 cut(s)	1184
BseCI	ATCGAT	1 cut(s)	1054
BseDI	CCNNGG	2 cut(s)	174, 771
BseGI	GGATG	4 cut(s)	80, 322, 604, 794
BseLI	CCNNNNNNNGG	2 cut(s)	152, 1218
BseMI	GCAATG	1 cut(s)	1223
BseMII	CTCAG	3 cut(s)	375, 801, 948
BseRI	GAGGAG	1 cut(s)	909
BseSI	GKGCMC	2 cut(s)	8, 1098
BseXI	GCAGC	2 cut(s)	907, 1144
BsgI	GTGCAG	1 cut(s)	1163
BshFI	GGCC	2 cut(s)	6, 825
BshVI	ATCGAT	1 cut(s)	1054
BsiHKAI	GWGCWC	1 cut(s)	963
BsiSI	CCGG	2 cut(s)	146, 176
BslFI	GGGAC	1 cut(s)	517
BslI	CCNNNNNNNGG	2 cut(s)	152, 1218
BsmFI	GGGAC	1 cut(s)	517
BsmI	GAATGC	1 cut(s)	211
BsnI	GGCC	2 cut(s)	6, 825
Bsp119I	TTCGAA	1 cut(s)	191
Bsp120I	GGGCCC	1 cut(s)	4
Bsp1286I	GDGCHC	3 cut(s)	8, 963, 1098
Bsp143I	GATC	5 cut(s)	102, 622, 1000, 1021, 1051
Bsp1720I	GCTNAGC	1 cut(s)	810
BspACI	CCGC	2 cut(s)	14, 288
BspANI	GGCC	2 cut(s)	6, 825
BspCNI	CTCAG	3 cut(s)	376, 802, 949
BspDI	ATCGAT	1 cut(s)	1054
BspHI	TCATGA	1 cut(s)	1264
BspLI	GGNNCC	3 cut(s)	6, 469, 526
BspMAI	CTGCAG	1 cut(s)	1134
BspMI	ACCTGC	2 cut(s)	143, 1126
BspOI	GCTAGC	1 cut(s)	1197
BspPI	GGATC	1 cut(s)	1016
BspT104I	TTCGAA	1 cut(s)	191
BsrBI	CCGCTC	1 cut(s)	16
BsrDI	GCAATG	1 cut(s)	1223
BssECI	CCNNGG	2 cut(s)	174, 771
BssMI	GATC	5 cut(s)	102, 622, 1000, 1021, 1051
BssSI	CACGAG	1 cut(s)	358
BssT1I	CCWWGG	1 cut(s)	771
Bst2BI	CACGAG	1 cut(s)	358
Bst2UI	CCWGG	1 cut(s)	1184
Bst6I	CTCTTC	3 cut(s)	657, 729, 1028
BstAPI	GCANNNNNTGC	1 cut(s)	1141
BstBI	TTCGAA	1 cut(s)	191
BstC8I	GCNNGC	4 cut(s)	14, 217, 1017, 1195
BstDEI	CTNAG	5 cut(s)	384, 546, 683, 810, 957
BstF5I	GGATG	4 cut(s)	80, 322, 604, 794
BstKTI	GATC	5 cut(s)	105, 625, 1003, 1024, 1054
BstMBI	GATC	5 cut(s)	102, 622, 1000, 1021, 1051
BstMWI	GCNNNNNNNGC	2 cut(s)	333, 1141
BstNI	CCWGG	1 cut(s)	1184
BstSCI	CCNGG	2 cut(s)	174, 1182
BstSFI	CTRYAG	1 cut(s)	1130
BstSLI	GKGCMC	2 cut(s)	8, 1098
BstV1I	GCAGC	2 cut(s)	907, 1144
Bsu15I	ATCGAT	1 cut(s)	1054
BsuRI	GGCC	2 cut(s)	6, 825
BsuTUI	ATCGAT	1 cut(s)	1054
BtsCI	GGATG	4 cut(s)	80, 322, 604, 794
BtsI	GCAGTG	1 cut(s)	1098
BtsIMutI	CAGTG	1 cut(s)	1098
BveI	ACCTGC	2 cut(s)	143, 1126
Cac8I	GCNNGC	4 cut(s)	14, 217, 1017, 1195
CciI	TCATGA	1 cut(s)	1264
Cfr13I	GGNCC	2 cut(s)	4, 5
ClaI	ATCGAT	1 cut(s)	1054
CviAII	CATG	4 cut(s)	394, 785, 971, 1265
DdeI	CTNAG	5 cut(s)	384, 546, 683, 810, 957
DpnI	GATC	5 cut(s)	104, 624, 1002, 1023, 1053
DpnII	GATC	5 cut(s)	102, 622, 1000, 1021, 1051
DraI	TTTAAA	2 cut(s)	450, 1107
Eam1104I	CTCTTC	3 cut(s)	657, 729, 1028
EarI	CTCTTC	3 cut(s)	657, 729, 1028
Eco130I	CCWWGG	1 cut(s)	771
Eco24I	GRGCYC	1 cut(s)	8
Eco32I	GATATC	1 cut(s)	988
EcoO109I	RGGNCCY	1 cut(s)	5
EcoRI	GAATTC	1 cut(s)	1169
EcoRII	CCWGG	1 cut(s)	1182
EcoRV	GATATC	1 cut(s)	988
EcoT14I	CCWWGG	1 cut(s)	771
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	1 cut(s)	771
FaeI	CATG	4 cut(s)	397, 788, 974, 1268
FaqI	GGGAC	1 cut(s)	517
FatI	CATG	4 cut(s)	393, 784, 970, 1264
FauI	CCCGC	1 cut(s)	21
FbaI	TGATCA	1 cut(s)	1000
Fnu4HI	GCNGC	2 cut(s)	896, 1133
FokI	GGATG	4 cut(s)	67, 329, 611, 801
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	2 cut(s)	896, 1133
FspBI	CTAG	4 cut(s)	612, 818, 861, 1194
GluI	GCNGC	2 cut(s)	896, 1133
GsuI	CTGGAG	1 cut(s)	40
HaeIII	GGCC	2 cut(s)	6, 825
HapII	CCGG	2 cut(s)	146, 176
Hin1II	CATG	4 cut(s)	397, 788, 974, 1268
HindIII	AAGCTT	1 cut(s)	1013
HinfI	GANTC	3 cut(s)	163, 668, 1080
HpaII	CCGG	2 cut(s)	146, 176
HphI	GGTGA	2 cut(s)	167, 265
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	5 cut(s)	244, 510, 631, 673, 703
Hpy8I	GTNNAC	1 cut(s)	256
Hpy99I	CGWCG	1 cut(s)	885
HpyAV	CCTTC	4 cut(s)	20, 205, 515, 836
HpyCH4IV	ACGT	1 cut(s)	883
HpyCH4V	TGCA	8 cut(s)	219, 304, 602, 914, 1091, 1132, 1144, 1216
HpyF10VI	GCNNNNNNNGC	2 cut(s)	333, 1141
HpyF3I	CTNAG	5 cut(s)	384, 546, 683, 810, 957
HpySE526I	ACGT	1 cut(s)	883
Hsp92II	CATG	4 cut(s)	397, 788, 974, 1268
Ksp22I	TGATCA	1 cut(s)	1000
Kzo9I	GATC	5 cut(s)	102, 622, 1000, 1021, 1051
LmnI	GCTCC	4 cut(s)	333, 467, 892, 1190
Lsp1109I	GCAGC	2 cut(s)	907, 1144
LweI	GCATC	2 cut(s)	589, 923
MaeI	CTAG	4 cut(s)	612, 818, 861, 1194
MaeII	ACGT	1 cut(s)	883
MaeIII	GTNAC	3 cut(s)	59, 155, 1073
MalI	GATC	5 cut(s)	104, 624, 1002, 1023, 1053
MbiI	CCGCTC	1 cut(s)	16
MboI	GATC	5 cut(s)	102, 622, 1000, 1021, 1051
MboII	GAAGA	6 cut(s)	239, 674, 704, 746, 1045, 1189
MfeI	CAATTG	1 cut(s)	603
MhlI	GDGCHC	3 cut(s)	8, 963, 1098
MlyI	GAGTC	1 cut(s)	1074
MmeI	TCCRAC	3 cut(s)	146, 533, 576
MroXI	GAANNNNTTC	1 cut(s)	856
MseI	TTAA	5 cut(s)	41, 99, 282, 449, 1106
MslI	CAYNNNNRTG	2 cut(s)	630, 702
MspI	CCGG	2 cut(s)	146, 176
MspR9I	CCNGG	2 cut(s)	176, 1184
MunI	CAATTG	1 cut(s)	603
Mva1269I	GAATGC	1 cut(s)	211
MvaI	CCWGG	1 cut(s)	1184
MwoI	GCNNNNNNNGC	2 cut(s)	333, 1141
NciI	CCSGG	1 cut(s)	176
NdeII	GATC	5 cut(s)	102, 622, 1000, 1021, 1051
NheI	GCTAGC	1 cut(s)	1193
NlaIII	CATG	4 cut(s)	397, 788, 974, 1268
NlaIV	GGNNCC	3 cut(s)	6, 469, 526
NmuCI	GTSAC	2 cut(s)	155, 1073
NspV	TTCGAA	1 cut(s)	191
PagI	TCATGA	1 cut(s)	1264
PaqCI	CACCTGC	2 cut(s)	143, 1126
PctI	GAATGC	1 cut(s)	211
PdmI	GAANNNNTTC	1 cut(s)	856
PfeI	GAWTC	2 cut(s)	163, 668
PkrI	GCNGC	2 cut(s)	897, 1134
PleI	GAGTC	1 cut(s)	1074
PpsI	GAGTC	1 cut(s)	1074
Psp6I	CCWGG	1 cut(s)	1182
PspGI	CCWGG	1 cut(s)	1182
PspN4I	GGNNCC	3 cut(s)	6, 469, 526
PspOMI	GGGCCC	1 cut(s)	4
PspPI	GGNCC	2 cut(s)	4, 5
PstI	CTGCAG	1 cut(s)	1134
RseI	CAYNNNNRTG	2 cut(s)	630, 702
SaqAI	TTAA	5 cut(s)	41, 99, 282, 449, 1106
SatI	GCNGC	2 cut(s)	896, 1133
Sau3AI	GATC	5 cut(s)	102, 622, 1000, 1021, 1051
Sau96I	GGNCC	2 cut(s)	4, 5
SchI	GAGTC	1 cut(s)	1074
ScrFI	CCNGG	2 cut(s)	176, 1184
SduI	GDGCHC	3 cut(s)	8, 963, 1098
SfaNI	GCATC	2 cut(s)	589, 923
SfcI	CTRYAG	1 cut(s)	1130
SfuI	TTCGAA	1 cut(s)	191
SmiMI	CAYNNNNRTG	2 cut(s)	630, 702
SmlI	CTYRAG	1 cut(s)	716
SmoI	CTYRAG	1 cut(s)	716
SsiI	CCGC	2 cut(s)	14, 288
SspI	AATATT	1 cut(s)	1256
SspMI	CTAG	4 cut(s)	612, 818, 861, 1194
StyD4I	CCNGG	2 cut(s)	174, 1182
StyI	CCWWGG	1 cut(s)	771
TaiI	ACGT	1 cut(s)	886
TaqI	TCGA	3 cut(s)	191, 443, 1054
TfiI	GAWTC	2 cut(s)	163, 668
Tru1I	TTAA	5 cut(s)	41, 99, 282, 449, 1106
Tru9I	TTAA	5 cut(s)	41, 99, 282, 449, 1106
TscAI	CASTG	1 cut(s)	1098
TseFI	GTSAC	2 cut(s)	155, 1073
TseI	GCWGC	2 cut(s)	895, 1132
Tsp45I	GTSAC	2 cut(s)	155, 1073
TspDTI	ATGAA	6 cut(s)	246, 311, 420, 705, 1046, 1253
TspGWI	ACGGA	1 cut(s)	491
TspRI	CASTG	1 cut(s)	1098
XapI	RAATTY	6 cut(s)	45, 129, 445, 491, 1005, 1169
XbaI	TCTAGA	2 cut(s)	817, 860
XmnI	GAANNNNTTC	1 cut(s)	856
XspI	CTAG	4 cut(s)	612, 818, 861, 1194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.