Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003414

Physical Location & Seq

Genomic Coordinates Reverse (-)

14102525 .. 14116976

Gene Structure 14452 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011962

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1446 bp

ATGGTTGGATCCAGCCAGCACTCCAGCAGAGATGGGTTAGTGCATAATGAGGAAGAACCGGACCAAAATTGGGCGAACAAATGCGCTACGCTCGGCGGAACCACAGAGAAAAAGGAATTGTTACAAATTTCATCTCGGCTAGAAATGCTCAAAGGTGCGAATGCCAAGGCTTGCAATTTGGAAGATGAAGTTAGCTCTGACGATGAGGTGAACAATGTGGTGTCAAAAGTTTCTGTAAATGGCGGTGCTAAAGAGTTGCAAAAAAAAGAGGATGTTCATAGCTTTTGCAGCGATAAACAAGACAAATTACACTCGTGGTCTGCTGCAAGTAAAGAAGCTGAGGCACTCATGCGTTTGAATGAAAAAACTTCTTGCTCATCATCATTGTCTGCTTACTCGAATTTAAAGAAATCGTCTAAAGGAGCCAAAGGCAAAGGCAAACCAAAATTTTTGTTCCGTTTTCCGACACACAAGGAAGGAACCTCGTCCCATTCTATATCTAAGAATGATAGTGATGTGTCATTCAGGGTTCAAGAACTGCCTGAAAGGTTGGATGCAATTGAGCCTAGAAATGTAGATCATTCAGATGTTGAACTTATTGAGGATATTCAGGGGGAAGAGGAATCAGAGATTGTGCTTAGAAATGAAGAACATTCAGATGTTGAACTTCTTGAGGACATTTTGGGGGAAGAGGAAAGTTTGTTAGAGGTTGAAGCCAAGGCTATTCGGCATGGATGTATGGGGCAGTCAATGGCGGAGCTTCTAGATGGCCTTCAAGATAAGACGACTATTTGGAGAAAAAGTTCTAGAAAGCATAGTAGAAAACGACGTAAAAGGGAGCAGCCTGTTGTAAAGTGTGCATCTCCTCTGGGAGATGGAACTATTGACATTGAAAGCTCTCCTGAGCACTTGGGTCATGGATTGCCAATTGATATCAAGATTGATGATCAAATTTTGAAGCTTGCTGATCCAGAAATGAAGAGGCAGACGTTGGTAGATCGATTTCAGGAAGCTATGAGTGACAGACTCCTTGTTGCAGTGCCCAAAACTTTAAAGAGTGGATTATTTGGGAAACTGCAGCAGGTGGTGCAGAGTGAGAAAGAAACTGATATAGAATTTTTGAAGAAGATCCAGGAGGGAGCTAGTGAAAGTAATGACCCAAATTGCGTGGATGTGAAGATTCTTTCAAAATACCTGGATGCAAAGCTTACCGTGTGTCACTGCTCCTTCGGTAATAACTCAAAGCGCCTCCCATCGCCAGAGTTCTGCGAAGAAATGGTTGACGAAGGACCGGAAAGGACTATTATTTTCAATCCACGAGTTTGCAATGATATTGACCTTGATATTGGGAAATGGATTCGTATGCACCCTCCATGGAGGGAGATCCGTGTCGGCACTGCTCAAAACATAATCCTGTCGACATATTTCTCTGAAATTTCAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

482

Amino Acids

53.9

Weight (kDa)

5.38

Isoelectric Point (pI)

52.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02960 AT1G02960 AT1G02960 AT1G02960 AT1G02960 AT1G02960 AT1G02965
fragaria_vesca	FvH4_2g25160 FvH4_2g25160 FvH4_2g25160
malus_domestica	MD03G1283300.v1.1
prunus_persica	Prupe.8G256400_v2.0.a1 Prupe.8G256400_v2.0.a1 Prupe.8G256400_v2.0.a1 Prupe.8G256400_v2.0.a1 Prupe.8G256400_v2.0.a1 Prupe.8G256400_v2.0.a1 Prupe.8G256400_v2.0.a1
pyrus_communis	pycom03g22410
rosa_chinensis	RchiOBHm_Chr6g0293271
rosa_laevigata	RLG00000011962
rosa_multiflora	Rmu_ssc0000162.1_g000034
rosa_roxburghii	Rroxscaffold_7G00174290
rosa_rugosa	Rorug06G0233900 Rorug06G0234000 Rorug06G0234100 Rorug06G0234100 Rorug06G0234100 Rorug06G0234200
rosa_samantha	Rh6AG346900 Rh6AG347000 Rh6BG354300 Rh6CG360800 Rh6DG347300 Rh6DG347400
rosa_wichuraiana	Rw6G030200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1072
Acc36I	ACCTGC	1 cut(s)	1072
AccI	GTMKAC	1 cut(s)	1418
AciI	CCGC	3 cut(s)	96, 243, 755
AclWI	GGATC	5 cut(s)	3, 16, 962, 1123, 1378
AcsI	RAATTY	6 cut(s)	126, 400, 446, 951, 1115, 1434
AfiI	CCNNNNNNNGG	1 cut(s)	70
AjnI	CCWGG	2 cut(s)	1131, 1194
AloI	GAACNNNNNNTCC	2 cut(s)	787, 819
AluBI	AGCT	9 cut(s)	195, 282, 338, 760, 897, 961, 1013, 1142, 1207
AluI	AGCT	9 cut(s)	195, 282, 338, 760, 897, 961, 1013, 1142, 1207
Alw21I	GWGCWC	1 cut(s)	909
AlwI	GGATC	5 cut(s)	3, 16, 962, 1123, 1378
AoxI	GGCC	1 cut(s)	769
ApeKI	GCWGC	4 cut(s)	288, 323, 841, 1078
ApoI	RAATTY	6 cut(s)	126, 400, 446, 951, 1115, 1434
Asp700I	GAANNNNTTC	1 cut(s)	802
AspLEI	GCGC	2 cut(s)	86, 1248
AspS9I	GGNCC	2 cut(s)	61, 1289
AsuHPI	GGTGA	1 cut(s)	220
AvaII	GGWCC	2 cut(s)	61, 1289
BaeGI	GKGCMC	1 cut(s)	1044
BamHI	GGATCC	1 cut(s)	8
BauI	CACGAG	2 cut(s)	313, 1317
Bbv12I	GWGCWC	1 cut(s)	909
BbvCI	CCTCAGC	1 cut(s)	339
BbvI	GCAGC	4 cut(s)	300, 310, 853, 1090
BccI	CCATC	4 cut(s)	26, 761, 869, 1261
BciT130I	CCWGG	2 cut(s)	1133, 1196
BclI	TGATCA	1 cut(s)	946
BfaI	CTAG	5 cut(s)	140, 567, 764, 807, 1143
BfmI	CTRYAG	1 cut(s)	1076
BfoI	RGCGCY	1 cut(s)	1249
BfuAI	ACCTGC	1 cut(s)	1072
BisI	GCNGC	4 cut(s)	289, 324, 842, 1079
BlsI	GCNGC	4 cut(s)	290, 325, 843, 1080
Bme1390I	CCNGG	2 cut(s)	1133, 1196
Bme18I	GGWCC	2 cut(s)	61, 1289
BmgT120I	GGNCC	2 cut(s)	61, 1289
BmiI	GGNNCC	4 cut(s)	10, 100, 424, 481
BmrFI	CCNGG	2 cut(s)	1133, 1196
BmsI	GCATC	3 cut(s)	544, 869, 1189
BpmI	CTGGAG	1 cut(s)	7
Bpu10I	CCTNAGC	2 cut(s)	339, 903
BpuEI	CTTGAG	1 cut(s)	692
Bsa29I	ATCGAT	1 cut(s)	1000
BsaJI	CCNNGG	3 cut(s)	165, 717, 1373
BsaWI	WCCGGW	2 cut(s)	58, 1291
BsaXI	ACNNNNNCTCC	2 cut(s)	787, 817
Bsc4I	CCNNNNNNNGG	1 cut(s)	70
Bse3DI	GCAATG	1 cut(s)	1333
BseBI	CCWGG	2 cut(s)	1133, 1196
BseCI	ATCGAT	1 cut(s)	1000
BseDI	CCNNGG	3 cut(s)	165, 717, 1373
BseGI	GGATG	5 cut(s)	277, 559, 740, 1177, 1204
BseLI	CCNNNNNNNGG	1 cut(s)	70
BseMI	GCAATG	1 cut(s)	1333
BseMII	CTCAG	2 cut(s)	330, 894
BseRI	GAGGAG	1 cut(s)	855
BseSI	GKGCMC	1 cut(s)	1044
BseXI	GCAGC	4 cut(s)	300, 310, 853, 1090
BsgI	GTGCAG	1 cut(s)	1109
BshFI	GGCC	1 cut(s)	771
BshVI	ATCGAT	1 cut(s)	1000
BsiHKAI	GWGCWC	1 cut(s)	909
BsiSI	CCGG	2 cut(s)	59, 1292
BslFI	GGGAC	1 cut(s)	472
BslI	CCNNNNNNNGG	1 cut(s)	70
BsmFI	GGGAC	1 cut(s)	472
BsmI	GAATGC	1 cut(s)	166
BsnI	GGCC	1 cut(s)	771
Bsp1286I	GDGCHC	2 cut(s)	909, 1044
Bsp143I	GATC	7 cut(s)	8, 577, 946, 967, 997, 1128, 1383
Bsp19I	CCATGG	1 cut(s)	1373
BspACI	CCGC	3 cut(s)	96, 243, 755
BspANI	GGCC	1 cut(s)	771
BspCNI	CTCAG	2 cut(s)	331, 895
BspDI	ATCGAT	1 cut(s)	1000
BspLI	GGNNCC	4 cut(s)	10, 100, 424, 481
BspMAI	CTGCAG	1 cut(s)	1080
BspMI	ACCTGC	1 cut(s)	1072
BspPI	GGATC	5 cut(s)	3, 16, 962, 1123, 1378
BsrDI	GCAATG	1 cut(s)	1333
BssECI	CCNNGG	3 cut(s)	165, 717, 1373
BssMI	GATC	7 cut(s)	8, 577, 946, 967, 997, 1128, 1383
BssSI	CACGAG	2 cut(s)	313, 1317
BssT1I	CCWWGG	3 cut(s)	165, 717, 1373
Bst2BI	CACGAG	2 cut(s)	313, 1317
Bst2UI	CCWGG	2 cut(s)	1133, 1196
Bst4CI	ACNGT	1 cut(s)	1213
Bst6I	CTCTTC	3 cut(s)	612, 684, 974
BstAPI	GCANNNNNTGC	1 cut(s)	1087
BstC8I	GCNNGC	3 cut(s)	17, 172, 963
BstDEI	CTNAG	4 cut(s)	339, 501, 638, 903
BstDSI	CCRYGG	1 cut(s)	1373
BstF5I	GGATG	5 cut(s)	277, 559, 740, 1177, 1204
BstH2I	RGCGCY	1 cut(s)	1249
BstHHI	GCGC	2 cut(s)	86, 1248
BstKTI	GATC	7 cut(s)	11, 580, 949, 970, 1000, 1131, 1386
BstMBI	GATC	7 cut(s)	8, 577, 946, 967, 997, 1128, 1383
BstMWI	GCNNNNNNNGC	3 cut(s)	145, 288, 1087
BstNI	CCWGG	2 cut(s)	1133, 1196
BstSCI	CCNGG	2 cut(s)	1131, 1194
BstSFI	CTRYAG	1 cut(s)	1076
BstSLI	GKGCMC	1 cut(s)	1044
BstV1I	GCAGC	4 cut(s)	300, 310, 853, 1090
BstX2I	RGATCY	3 cut(s)	8, 1128, 1383
BstYI	RGATCY	3 cut(s)	8, 1128, 1383
Bsu15I	ATCGAT	1 cut(s)	1000
BsuRI	GGCC	1 cut(s)	771
BsuTUI	ATCGAT	1 cut(s)	1000
BtgI	CCRYGG	1 cut(s)	1373
BtgZI	GCGATG	1 cut(s)	1239
BtsCI	GGATG	5 cut(s)	277, 559, 740, 1177, 1204
BtsI	GCAGTG	3 cut(s)	1044, 1219, 1395
BtsIMutI	CAGTG	3 cut(s)	1044, 1219, 1395
BveI	ACCTGC	1 cut(s)	1072
Cac8I	GCNNGC	3 cut(s)	17, 172, 963
CfoI	GCGC	2 cut(s)	86, 1248
Cfr13I	GGNCC	2 cut(s)	61, 1289
ClaI	ATCGAT	1 cut(s)	1000
CspCI	CAANNNNNGTGG	2 cut(s)	1149, 1184
CviAII	CATG	4 cut(s)	349, 731, 917, 1374
DdeI	CTNAG	4 cut(s)	339, 501, 638, 903
DpnI	GATC	7 cut(s)	10, 579, 948, 969, 999, 1130, 1385
DpnII	GATC	7 cut(s)	8, 577, 946, 967, 997, 1128, 1383
DraI	TTTAAA	2 cut(s)	405, 1053
Eam1104I	CTCTTC	3 cut(s)	612, 684, 974
EarI	CTCTTC	3 cut(s)	612, 684, 974
EciI	GGCGGA	2 cut(s)	111, 770
Eco130I	CCWWGG	3 cut(s)	165, 717, 1373
Eco32I	GATATC	1 cut(s)	934
Eco47I	GGWCC	2 cut(s)	61, 1289
EcoRII	CCWGG	2 cut(s)	1131, 1194
EcoRV	GATATC	1 cut(s)	934
EcoT14I	CCWWGG	3 cut(s)	165, 717, 1373
ErhI	CCWWGG	3 cut(s)	165, 717, 1373
FaeI	CATG	4 cut(s)	352, 734, 920, 1377
FaqI	GGGAC	1 cut(s)	472
FatI	CATG	4 cut(s)	348, 730, 916, 1373
FbaI	TGATCA	1 cut(s)	946
FblI	GTMKAC	1 cut(s)	1418
Fnu4HI	GCNGC	4 cut(s)	289, 324, 842, 1079
FokI	GGATG	5 cut(s)	284, 566, 747, 1184, 1211
Fsp4HI	GCNGC	4 cut(s)	289, 324, 842, 1079
FspBI	CTAG	5 cut(s)	140, 567, 764, 807, 1143
GlaI	GCGC	2 cut(s)	85, 1247
GluI	GCNGC	4 cut(s)	289, 324, 842, 1079
GsuI	CTGGAG	1 cut(s)	7
HaeII	RGCGCY	1 cut(s)	1249
HaeIII	GGCC	1 cut(s)	771
HapII	CCGG	2 cut(s)	59, 1292
HhaI	GCGC	2 cut(s)	86, 1248
Hin1II	CATG	4 cut(s)	352, 734, 920, 1377
Hin6I	GCGC	2 cut(s)	84, 1246
HinP1I	GCGC	2 cut(s)	84, 1246
HincII	GTYRAC	2 cut(s)	1282, 1419
HindII	GTYRAC	2 cut(s)	1282, 1419
HindIII	AAGCTT	2 cut(s)	959, 1205
HinfI	GANTC	4 cut(s)	623, 1026, 1180, 1357
HpaII	CCGG	2 cut(s)	59, 1292
HphI	GGTGA	1 cut(s)	220
Hpy166II	GTNNAC	3 cut(s)	211, 1282, 1419
Hpy188I	TCNGA	6 cut(s)	199, 465, 586, 628, 658, 1432
Hpy188III	TCNNGA	9 cut(s)	533, 671, 764, 776, 807, 902, 937, 971, 1007
Hpy8I	GTNNAC	3 cut(s)	211, 1282, 1419
Hpy99I	CGWCG	1 cut(s)	831
HpyAV	CCTTC	4 cut(s)	470, 782, 1237, 1280
HpyCH4III	ACNGT	1 cut(s)	1213
HpyCH4IV	ACGT	2 cut(s)	829, 989
HpyF10VI	GCNNNNNNNGC	3 cut(s)	145, 288, 1087
HpyF3I	CTNAG	4 cut(s)	339, 501, 638, 903
HpySE526I	ACGT	2 cut(s)	829, 989
Hsp92II	CATG	4 cut(s)	352, 734, 920, 1377
HspAI	GCGC	2 cut(s)	84, 1246
Ksp22I	TGATCA	1 cut(s)	946
Kzo9I	GATC	7 cut(s)	8, 577, 946, 967, 997, 1128, 1383
LmnI	GCTCC	5 cut(s)	422, 757, 838, 1139, 1229
Lsp1109I	GCAGC	4 cut(s)	300, 310, 853, 1090
LweI	GCATC	3 cut(s)	544, 869, 1189
MaeI	CTAG	5 cut(s)	140, 567, 764, 807, 1143
MaeII	ACGT	2 cut(s)	829, 989
MaeIII	GTNAC	3 cut(s)	120, 1019, 1217
MalI	GATC	7 cut(s)	10, 579, 948, 969, 999, 1130, 1385
MboI	GATC	7 cut(s)	8, 577, 946, 967, 997, 1128, 1383
MfeI	CAATTG	2 cut(s)	558, 927
MflI	RGATCY	3 cut(s)	8, 1128, 1383
MhlI	GDGCHC	2 cut(s)	909, 1044
MlyI	GAGTC	1 cut(s)	1020
MmeI	TCCRAC	2 cut(s)	488, 531
MroXI	GAANNNNTTC	1 cut(s)	802
MseI	TTAA	2 cut(s)	404, 1052
MslI	CAYNNNNRTG	2 cut(s)	585, 657
MspI	CCGG	2 cut(s)	59, 1292
MspR9I	CCNGG	2 cut(s)	1133, 1196
MunI	CAATTG	2 cut(s)	558, 927
Mva1269I	GAATGC	1 cut(s)	166
MvaI	CCWGG	2 cut(s)	1133, 1196
MwoI	GCNNNNNNNGC	3 cut(s)	145, 288, 1087
NcoI	CCATGG	1 cut(s)	1373
NdeII	GATC	7 cut(s)	8, 577, 946, 967, 997, 1128, 1383
NlaIII	CATG	4 cut(s)	352, 734, 920, 1377
NlaIV	GGNNCC	4 cut(s)	10, 100, 424, 481
NmeAIII	GCCGAG	2 cut(s)	72, 115
NmuCI	GTSAC	2 cut(s)	1019, 1217
PaqCI	CACCTGC	1 cut(s)	1072
PctI	GAATGC	1 cut(s)	166
PdmI	GAANNNNTTC	1 cut(s)	802
PfeI	GAWTC	3 cut(s)	623, 1180, 1357
PfoI	TCCNGGA	1 cut(s)	1131
PkrI	GCNGC	4 cut(s)	290, 325, 843, 1080
PleI	GAGTC	1 cut(s)	1020
PpsI	GAGTC	1 cut(s)	1020
Psp6I	CCWGG	2 cut(s)	1131, 1194
PspGI	CCWGG	2 cut(s)	1131, 1194
PspN4I	GGNNCC	4 cut(s)	10, 100, 424, 481
PspPI	GGNCC	2 cut(s)	61, 1289
PstI	CTGCAG	1 cut(s)	1080
PsuI	RGATCY	3 cut(s)	8, 1128, 1383
RseI	CAYNNNNRTG	2 cut(s)	585, 657
SalI	GTCGAC	1 cut(s)	1417
SaqAI	TTAA	2 cut(s)	404, 1052
SatI	GCNGC	4 cut(s)	289, 324, 842, 1079
Sau3AI	GATC	7 cut(s)	8, 577, 946, 967, 997, 1128, 1383
Sau96I	GGNCC	2 cut(s)	61, 1289
SchI	GAGTC	1 cut(s)	1020
ScrFI	CCNGG	2 cut(s)	1133, 1196
SduI	GDGCHC	2 cut(s)	909, 1044
SfaNI	GCATC	3 cut(s)	544, 869, 1189
SfcI	CTRYAG	1 cut(s)	1076
SinI	GGWCC	2 cut(s)	61, 1289
SmiMI	CAYNNNNRTG	2 cut(s)	585, 657
SmlI	CTYRAG	1 cut(s)	671
SmoI	CTYRAG	1 cut(s)	671
SsiI	CCGC	3 cut(s)	96, 243, 755
SspMI	CTAG	5 cut(s)	140, 567, 764, 807, 1143
StyD4I	CCNGG	2 cut(s)	1131, 1194
StyI	CCWWGG	3 cut(s)	165, 717, 1373
TaaI	ACNGT	1 cut(s)	1213
TaiI	ACGT	2 cut(s)	832, 992
TaqI	TCGA	3 cut(s)	398, 1000, 1418
TfiI	GAWTC	3 cut(s)	623, 1180, 1357
Tru1I	TTAA	2 cut(s)	404, 1052
Tru9I	TTAA	2 cut(s)	404, 1052
TscAI	CASTG	3 cut(s)	1044, 1226, 1402
TseFI	GTSAC	2 cut(s)	1019, 1217
TseI	GCWGC	4 cut(s)	288, 323, 841, 1078
Tsp45I	GTSAC	2 cut(s)	1019, 1217
TspDTI	ATGAA	6 cut(s)	120, 201, 266, 375, 660, 992
TspGWI	ACGGA	2 cut(s)	446, 1376
TspRI	CASTG	3 cut(s)	1044, 1226, 1402
VpaK11BI	GGWCC	2 cut(s)	61, 1289
XapI	RAATTY	6 cut(s)	126, 400, 446, 951, 1115, 1434
XbaI	TCTAGA	2 cut(s)	763, 806
XmiI	GTMKAC	1 cut(s)	1418
XmnI	GAANNNNTTC	1 cut(s)	802
XspI	CTAG	5 cut(s)	140, 567, 764, 807, 1143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.