AT1G04170

Eukaryotic translation initiation factor 2 subunit gamma-like

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
1096882 .. 1099901
3020 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G04170.2

Sequence Viewer

Length: 1398 bp
ATGTCGAGGAACAAGGGTTTGGCTGAGCAAGATCTTAAAAAATTGGATGTAACTGTGCTACATCCTCTGTCTCCTGAGGTCATTTCTCGCCAGGCCACTATTAATATAGGAACCATTGGTCATGTCGCTCATGGAAAGTCCACTGTTGTTAAAGCTATTTCTGGTGTCCAGACTGTCCGTTTTAAAAATGAATTGGAGCGTAACATTACCATTAAGCTTGGATATGCAAACGCCAAGATTTACAAATGTGAGGATGAGAAATGCCCTAGACCAATGTGCTACAAGGCCTACGGAAGTGGAAAGGAAGACACTCCCAATTGTGATGTCCCCGGATTTGAAAACTCCAAGATGAAACTATTGAGGCATGTCTCATTCGTTGATTGCCCGGGTCACGATATTCTCATGGCAACAATGCTTAATGGAGCAGCCATCATGGATGGTGCACTACTTTTAATCGCTGCAAATGAAACTTGTCCACAACCACAAACGTCTGAACATCTTGCTGCCGTTGAGATTATGCAACTTAAGCATATCATCATCCTTCAGAACAAGATTGATCTTATTCAAGAGAATGTTGCCATTAATCAGCACGAGGCAATTCAGAAATTTATAATGAACACTGTTGCTGATGCTGCTCCGATCGTCCCTGTCTCAGCACAACTGAAATACAACATTGATGTGGTGTGCGAGTACATTGTCAAGAAGATCCCAATCCCTGAGAGGAATTTTGTGTCACCCCCAAATATGATAGTGATTCGGTCTTTTGATGTCAACAAACCTGGTTATGAGGTTGATGAGATCAAAGGTGGAGTTGCAGGTGGAAGTATCCTACGGGGTGTTTTGAGAGTCAACCAATTAATCGAAATCCGACCTGGTATCGTTACCAAAGACGAGCGTGGCAACTCAAAATGCACTCCAATTTACTCTCGCATCATTTCACTCTACGCGGAACAGAACGAGCTTCAGTTTGCTGTTCCTGGAGGTCTAATAGGAGTTGGAACAACAATGGACCCAACTCTCACTCGTGCAGATCGATTAGTTGGTCAAGTCCTTGGTGAAATCGGTTCACTTCCTGATGTATTTGTTGAACTCGAGGTGAACTTCTTTCTTCTACGACGTTTGTTGGGAGTGAGAACAAAGGGATCAGAGAAACAAGGGAAAGTGTCAAAGCTAACGAAAGGAGAGATTCTGATGCTCAACATTGGTTCGATGTCCACTGGAGCCAAAGTTGTAGGAGTTAAAGTCGATCTGGCTAAACTGCAACTGACTGCGCCTGTTTGTACCAGCAAAGGAGAGAAAGTGGCTCTAAGCAGACGTGTGGAAAAGCATTGGCGTTTGATTGGTTGGGGTCAGATTCAAGCTGGAACCACCATCGAAGTTCCTCCTTCACCTTTCTAA

Protein Analysis

465

Amino Acids

50.85

Weight (kDa)

8.96

Isoelectric Point (pI)

39.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GTP_EFTU PF00009 33 - 237 5.2e-25 Elongation factor Tu GTP binding domain
GTP_EFTU_D2 PF03144 269 - 351 8.8e-09 Elongation factor Tu domain 2
eIF2_C PF09173 363 - 452 4.3e-32 Initiation factor eIF2 gamma, C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 611
AarI CACCTGC 1 cut(s) 806
Acc36I ACCTGC 1 cut(s) 806
AccII CGCG 1 cut(s) 947
AciI CCGC 1 cut(s) 947
AclWI GGATC 2 cut(s) 700, 1150
AcsI RAATTY 2 cut(s) 605, 724
AcuI CTGAAG 2 cut(s) 527, 947
AfaI GTAC 2 cut(s) 692, 1282
AflII CTTAAG 1 cut(s) 524
AflIII ACRYGT 1 cut(s) 1315
AgsI TTSAA 4 cut(s) 338, 566, 1088, 1358
AjiI CACGTC 1 cut(s) 1316
AjnI CCWGG 4 cut(s) 90, 778, 871, 976
AjuI GAANNNNNNNTTGG 1 cut(s) 34
AluBI AGCT 5 cut(s) 155, 217, 961, 1171, 1361
AluI AGCT 5 cut(s) 155, 217, 961, 1171, 1361
Alw21I GWGCWC 1 cut(s) 445
Alw26I GTCTC 3 cut(s) 75, 373, 655
Alw44I GTGCAC 1 cut(s) 441
AlwI GGATC 2 cut(s) 700, 1150
Ama87I CYCGRG 2 cut(s) 385, 1091
AoxI GGCC 2 cut(s) 93, 285
ApaLI GTGCAC 1 cut(s) 441
ApeKI GCWGC 4 cut(s) 425, 458, 503, 632
ApoI RAATTY 2 cut(s) 605, 724
AseI ATTAAT 3 cut(s) 102, 582, 857
AspLEI GCGC 1 cut(s) 1273
AspS9I GGNCC 1 cut(s) 1009
AsuC2I CCSGG 3 cut(s) 330, 386, 387
AsuHPI GGTGA 4 cut(s) 726, 1067, 1108, 1380
AvaI CYCGRG 2 cut(s) 385, 1091
AvaII GGWCC 1 cut(s) 1009
AxyI CCTNAGG 1 cut(s) 75
BaeGI GKGCMC 1 cut(s) 445
BauI CACGAG 2 cut(s) 590, 1023
BbsI GAAGAC 1 cut(s) 312
Bbv12I GWGCWC 1 cut(s) 445
BbvI GCAGC 4 cut(s) 437, 445, 490, 619
BccI CCATC 3 cut(s) 431, 437, 1379
BceAI ACGGC 1 cut(s) 491
BciT130I CCWGG 4 cut(s) 92, 780, 873, 978
BciVI GTATCC 1 cut(s) 836
BcnI CCSGG 3 cut(s) 330, 386, 387
BcoDI GTCTC 3 cut(s) 75, 373, 655
BfaI CTAG 1 cut(s) 267
BfrI CTTAAG 1 cut(s) 524
BfuAI ACCTGC 1 cut(s) 806
BfuI GTATCC 1 cut(s) 836
BglII AGATCT 1 cut(s) 31
BisI GCNGC 4 cut(s) 426, 459, 504, 633
BlpI GCTNAGC 1 cut(s) 24
BlsI GCNGC 4 cut(s) 427, 460, 505, 634
Bme1390I CCNGG 7 cut(s) 92, 330, 386, 387, 780, 873, 978
Bme18I GGWCC 1 cut(s) 1009
BmeT110I CYCGRG 2 cut(s) 385, 1091
BmgBI CACGTC 1 cut(s) 1316
BmgT120I GGNCC 1 cut(s) 1009
BmiI GGNNCC 4 cut(s) 112, 1011, 1222, 1366
BmrFI CCNGG 7 cut(s) 92, 330, 386, 387, 780, 873, 978
BmsI GCATC 3 cut(s) 619, 939, 1182
BpiI GAAGAC 1 cut(s) 312
BpmI CTGGAG 2 cut(s) 999, 1239
Bpu1102I GCTNAGC 1 cut(s) 24
BpuMI CCSGG 3 cut(s) 330, 386, 387
Bsa29I ATCGAT 1 cut(s) 1033
BsaBI GATNNNNATC 1 cut(s) 710
BsaJI CCNNGG 3 cut(s) 328, 385, 1051
BsaXI ACNNNNNCTCC 6 cut(s) 1212, 1227, 1242, 1257, 1284, 1314
Bse1I ACTGG 1 cut(s) 1222
Bse21I CCTNAGG 1 cut(s) 75
Bse8I GATNNNNATC 1 cut(s) 710
BseBI CCWGG 4 cut(s) 92, 780, 873, 978
BseCI ATCGAT 1 cut(s) 1033
BseDI CCNNGG 3 cut(s) 328, 385, 1051
BseGI GGATG 5 cut(s) 52, 61, 259, 442, 537
BseJI GATNNNNATC 1 cut(s) 710
BseMII CTCAG 4 cut(s) 15, 66, 666, 708
BseNI ACTGG 1 cut(s) 1222
BseSI GKGCMC 1 cut(s) 445
BseXI GCAGC 4 cut(s) 437, 445, 490, 619
BsgI GTGCAG 1 cut(s) 1047
Bsh1236I CGCG 1 cut(s) 947
Bsh1285I CGRYCG 1 cut(s) 642
BshFI GGCC 2 cut(s) 95, 287
BshVI ATCGAT 1 cut(s) 1033
BsiEI CGRYCG 1 cut(s) 642
BsiHKAI GWGCWC 1 cut(s) 445
BsiHKCI CYCGRG 2 cut(s) 385, 1091
BsiSI CCGG 2 cut(s) 330, 386
BslFI GGGAC 2 cut(s) 311, 629
BsmAI GTCTC 3 cut(s) 75, 373, 655
BsmFI GGGAC 2 cut(s) 311, 629
BsnI GGCC 2 cut(s) 95, 287
BsoBI CYCGRG 2 cut(s) 385, 1091
Bsp1286I GDGCHC 1 cut(s) 445
Bsp143I GATC 8 cut(s) 31, 556, 639, 705, 798, 1030, 1142, 1246
Bsp1720I GCTNAGC 1 cut(s) 24
BspACI CCGC 1 cut(s) 947
BspANI GGCC 2 cut(s) 95, 287
BspCNI CTCAG 4 cut(s) 16, 67, 665, 709
BspDI ATCGAT 1 cut(s) 1033
BspFNI CGCG 1 cut(s) 947
BspLI GGNNCC 4 cut(s) 112, 1011, 1222, 1366
BspMI ACCTGC 1 cut(s) 806
BspPI GGATC 2 cut(s) 700, 1150
BspTI CTTAAG 1 cut(s) 524
BsrI ACTGG 1 cut(s) 1222
BssECI CCNNGG 3 cut(s) 328, 385, 1051
BssMI GATC 8 cut(s) 31, 556, 639, 705, 798, 1030, 1142, 1246
BssSI CACGAG 2 cut(s) 590, 1023
BssT1I CCWWGG 1 cut(s) 1051
Bst2BI CACGAG 2 cut(s) 590, 1023
Bst2UI CCWGG 4 cut(s) 92, 780, 873, 978
Bst4CI ACNGT 4 cut(s) 55, 145, 175, 622
BstAFI CTTAAG 1 cut(s) 524
BstDEI CTNAG 5 cut(s) 24, 75, 652, 717, 1307
BstF5I GGATG 5 cut(s) 52, 61, 259, 442, 537
BstFNI CGCG 1 cut(s) 947
BstHHI GCGC 1 cut(s) 1273
BstKTI GATC 8 cut(s) 34, 559, 642, 708, 801, 1033, 1145, 1249
BstMAI GTCTC 3 cut(s) 75, 373, 655
BstMBI GATC 8 cut(s) 31, 556, 639, 705, 798, 1030, 1142, 1246
BstMCI CGRYCG 1 cut(s) 642
BstMWI GCNNNNNNNGC 2 cut(s) 526, 632
BstNI CCWGG 4 cut(s) 92, 780, 873, 978
BstNSI RCATGY 1 cut(s) 368
BstSCI CCNGG 7 cut(s) 90, 328, 384, 385, 778, 871, 976
BstSLI GKGCMC 1 cut(s) 445
BstUI CGCG 1 cut(s) 947
BstV1I GCAGC 4 cut(s) 437, 445, 490, 619
BstV2I GAAGAC 1 cut(s) 312
BstX2I RGATCY 2 cut(s) 31, 705
BstYI RGATCY 2 cut(s) 31, 705
Bsu15I ATCGAT 1 cut(s) 1033
Bsu36I CCTNAGG 1 cut(s) 75
BsuI GTATCC 1 cut(s) 836
BsuRI GGCC 2 cut(s) 95, 287
BsuTUI ATCGAT 1 cut(s) 1033
BtrI CACGTC 1 cut(s) 1316
BtsCI GGATG 5 cut(s) 52, 61, 259, 442, 537
BtsIMutI CAGTG 3 cut(s) 141, 618, 1215
BveI ACCTGC 1 cut(s) 806
CfoI GCGC 1 cut(s) 1273
Cfr13I GGNCC 1 cut(s) 1009
Cfr9I CCCGGG 1 cut(s) 385
ClaI ATCGAT 1 cut(s) 1033
CsiI ACCWGGT 2 cut(s) 778, 871
Csp6I GTAC 2 cut(s) 691, 1281
CviAII CATG 5 cut(s) 122, 131, 365, 403, 433
CviQI GTAC 2 cut(s) 691, 1281
DdeI CTNAG 5 cut(s) 24, 75, 652, 717, 1307
DpnI GATC 8 cut(s) 33, 558, 641, 707, 800, 1032, 1144, 1248
DpnII GATC 8 cut(s) 31, 556, 639, 705, 798, 1030, 1142, 1246
DraI TTTAAA 1 cut(s) 184
Eco130I CCWWGG 1 cut(s) 1051
Eco147I AGGCCT 1 cut(s) 287
Eco47I GGWCC 1 cut(s) 1009
Eco57I CTGAAG 2 cut(s) 527, 947
Eco81I CCTNAGG 1 cut(s) 75
Eco88I CYCGRG 2 cut(s) 385, 1091
EcoRII CCWGG 4 cut(s) 90, 778, 871, 976
EcoT14I CCWWGG 1 cut(s) 1051
ErhI CCWWGG 1 cut(s) 1051
FaeI CATG 5 cut(s) 125, 134, 368, 406, 436
FaqI GGGAC 2 cut(s) 311, 629
FatI CATG 5 cut(s) 121, 130, 364, 402, 432
Fnu4HI GCNGC 4 cut(s) 426, 459, 504, 633
FokI GGATG 5 cut(s) 48, 59, 266, 449, 524
Fsp4HI GCNGC 4 cut(s) 426, 459, 504, 633
FspBI CTAG 1 cut(s) 267
GlaI GCGC 1 cut(s) 1272
GluI GCNGC 4 cut(s) 426, 459, 504, 633
GsuI CTGGAG 2 cut(s) 999, 1239
HaeIII GGCC 2 cut(s) 95, 287
HapII CCGG 2 cut(s) 330, 386
HhaI GCGC 1 cut(s) 1273
Hin1II CATG 5 cut(s) 125, 134, 368, 406, 436
Hin6I GCGC 1 cut(s) 1271
HinP1I GCGC 1 cut(s) 1271
HincII GTYRAC 2 cut(s) 772, 850
HindII GTYRAC 2 cut(s) 772, 850
HindIII AAGCTT 1 cut(s) 215
HinfI GANTC 4 cut(s) 754, 846, 1186, 1354
HpaII CCGG 2 cut(s) 330, 386
HphI GGTGA 4 cut(s) 726, 1067, 1108, 1380
Hpy166II GTNNAC 8 cut(s) 141, 443, 476, 772, 850, 1067, 1099, 1215
Hpy188I TCNGA 8 cut(s) 493, 546, 603, 639, 869, 1147, 1191, 1353
Hpy188III TCNNGA 6 cut(s) 74, 169, 392, 566, 700, 1073
Hpy8I GTNNAC 8 cut(s) 141, 443, 476, 772, 850, 1067, 1099, 1215
Hpy99I CGWCG 1 cut(s) 1119
HpyAV CCTTC 2 cut(s) 551, 1395
HpyCH4III ACNGT 4 cut(s) 55, 145, 175, 622
HpyCH4IV ACGT 3 cut(s) 488, 1117, 1315
HpyCH4V TGCA 8 cut(s) 227, 443, 461, 520, 815, 912, 1028, 1261
HpyF10VI GCNNNNNNNGC 2 cut(s) 526, 632
HpyF3I CTNAG 5 cut(s) 24, 75, 652, 717, 1307
HpySE526I ACGT 3 cut(s) 488, 1117, 1315
Hsp92II CATG 5 cut(s) 125, 134, 368, 406, 436
HspAI GCGC 1 cut(s) 1271
Kzo9I GATC 8 cut(s) 31, 556, 639, 705, 798, 1030, 1142, 1246
LmnI GCTCC 4 cut(s) 196, 422, 640, 1220
Lsp1109I GCAGC 4 cut(s) 437, 445, 490, 619
LweI GCATC 3 cut(s) 619, 939, 1182
MabI ACCWGGT 2 cut(s) 778, 871
MaeI CTAG 1 cut(s) 267
MaeII ACGT 3 cut(s) 488, 1117, 1315
MaeIII GTNAC 5 cut(s) 49, 200, 389, 732, 880
MalI GATC 8 cut(s) 33, 558, 641, 707, 800, 1032, 1144, 1248
MboI GATC 8 cut(s) 31, 556, 639, 705, 798, 1030, 1142, 1246
MboII GAAGA 3 cut(s) 317, 715, 1100
MfeI CAATTG 1 cut(s) 316
MflI RGATCY 2 cut(s) 31, 705
MhlI GDGCHC 1 cut(s) 445
MluCI AATT 8 cut(s) 41, 191, 316, 597, 605, 724, 854, 918
MlyI GAGTC 1 cut(s) 855
MmeI TCCRAC 2 cut(s) 892, 976
MslI CAYNNNNRTG 1 cut(s) 677
MspCI CTTAAG 1 cut(s) 524
MspI CCGG 2 cut(s) 330, 386
MspR9I CCNGG 7 cut(s) 92, 330, 386, 387, 780, 873, 978
MunI CAATTG 1 cut(s) 316
MvaI CCWGG 4 cut(s) 92, 780, 873, 978
MvnI CGCG 1 cut(s) 947
MwoI GCNNNNNNNGC 2 cut(s) 526, 632
NciI CCSGG 3 cut(s) 330, 386, 387
NdeII GATC 8 cut(s) 31, 556, 639, 705, 798, 1030, 1142, 1246
NlaIII CATG 5 cut(s) 125, 134, 368, 406, 436
NlaIV GGNNCC 4 cut(s) 112, 1011, 1222, 1366
NmuCI GTSAC 2 cut(s) 389, 732
NspI RCATGY 1 cut(s) 368
PaeR7I CTCGAG 1 cut(s) 1091
PaqCI CACCTGC 1 cut(s) 806
PceI AGGCCT 1 cut(s) 287
PcsI WCGNNNNNNNCGW 1 cut(s) 1030
PfeI GAWTC 3 cut(s) 754, 1186, 1354
PfoI TCCNGGA 1 cut(s) 976
PkrI GCNGC 4 cut(s) 427, 460, 505, 634
Ple19I CGATCG 1 cut(s) 642
PleI GAGTC 1 cut(s) 854
PpsI GAGTC 1 cut(s) 854
PshBI ATTAAT 3 cut(s) 102, 582, 857
PsiI TTATAA 1 cut(s) 611
Psp6I CCWGG 4 cut(s) 90, 778, 871, 976
PspGI CCWGG 4 cut(s) 90, 778, 871, 976
PspN4I GGNNCC 4 cut(s) 112, 1011, 1222, 1366
PspPI GGNCC 1 cut(s) 1009
PspXI VCTCGAGB 1 cut(s) 1091
PsuI RGATCY 2 cut(s) 31, 705
PvuI CGATCG 1 cut(s) 642
RsaI GTAC 2 cut(s) 692, 1282
RsaNI GTAC 2 cut(s) 691, 1281
RseI CAYNNNNRTG 1 cut(s) 677
SatI GCNGC 4 cut(s) 426, 459, 504, 633
Sau3AI GATC 8 cut(s) 31, 556, 639, 705, 798, 1030, 1142, 1246
Sau96I GGNCC 1 cut(s) 1009
SchI GAGTC 1 cut(s) 855
ScrFI CCNGG 7 cut(s) 92, 330, 386, 387, 780, 873, 978
SduI GDGCHC 1 cut(s) 445
SexAI ACCWGGT 2 cut(s) 778, 871
SfaNI GCATC 3 cut(s) 619, 939, 1182
Sfr274I CTCGAG 1 cut(s) 1091
SinI GGWCC 1 cut(s) 1009
SlaI CTCGAG 1 cut(s) 1091
SmaI CCCGGG 1 cut(s) 387
SmiMI CAYNNNNRTG 1 cut(s) 677
SmlI CTYRAG 2 cut(s) 524, 1091
SmoI CTYRAG 2 cut(s) 524, 1091
Sse9I AATT 8 cut(s) 41, 191, 316, 597, 605, 724, 854, 918
SseBI AGGCCT 1 cut(s) 287
SsiI CCGC 1 cut(s) 947
SspMI CTAG 1 cut(s) 267
StuI AGGCCT 1 cut(s) 287
StyD4I CCNGG 7 cut(s) 90, 328, 384, 385, 778, 871, 976
StyI CCWWGG 1 cut(s) 1051
TaaI ACNGT 4 cut(s) 55, 145, 175, 622
TaiI ACGT 3 cut(s) 491, 1120, 1318
TaqI TCGA 7 cut(s) 5, 861, 1033, 1092, 1208, 1245, 1374
TaqII GACCGA 1 cut(s) 747
TasI AATT 8 cut(s) 41, 191, 316, 597, 605, 724, 854, 918
TatI WGTACW 1 cut(s) 690
TfiI GAWTC 3 cut(s) 754, 1186, 1354
TscAI CASTG 3 cut(s) 148, 625, 1222
TseFI GTSAC 2 cut(s) 389, 732
TseI GCWGC 4 cut(s) 425, 458, 503, 632
Tsp45I GTSAC 2 cut(s) 389, 732
TspDTI ATGAA 4 cut(s) 204, 365, 480, 629
TspGWI ACGGA 2 cut(s) 167, 306
TspMI CCCGGG 1 cut(s) 385
TspRI CASTG 3 cut(s) 148, 625, 1222
Vha464I CTTAAG 1 cut(s) 524
VneI GTGCAC 1 cut(s) 441
VpaK11BI GGWCC 1 cut(s) 1009
VspI ATTAAT 3 cut(s) 102, 582, 857
XapI RAATTY 2 cut(s) 605, 724
XceI RCATGY 1 cut(s) 368
XhoI CTCGAG 1 cut(s) 1091
XmaI CCCGGG 1 cut(s) 385
XspI CTAG 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.