MD16G1166900.v1.1

Eukaryotic translation initiation factor 2 subunit

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Reverse (-)
13892016 .. 13896832
4817 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1166900.v1.1.491

Sequence Viewer

Length: 1395 bp
ATGTCGAGGAAAGGTTTGATGGAGCAAGACCTGAGTAAACTGGATGTAACAAAGTTGCATCCACTCTCGCCTGAAGTTATATCTCGTCAGGCGACTATCAATATTGGTACTATTGGTCATGTGGCTCATGGAAAGTCAACAGTTGTAAAAGCAATTTCTGGTGTTCAGACTGTTCGTTTTAAAAATGAGCTGGAGCGCAACATTACTATCAAGCTTGGATATGCCAATGCAAAGATATATATATGTGAAGACGAGCGCTGCCCTCGACCGATGGCTTACAAGGCATATGGAAGTGGAAAGGAAGATGCTCCTCTCTGTGATGTTCCTGGATTTGAGAACTGCAGGATGAAATTGTTGAGACATGTGTCTTTTGTAGATTGCCCGGGTCACGATATTCTTATGGCTACTATGCTTAATGGTGCCGCAATTATGGACGGAGCATTACTTCTCATTGCTGCTAATGAAAGCTGTCCCCAACCACAAACTTCTGAGCATCTGGCTGCTGTTGAAATTATGCGTCTTCAACATATTATCATTCTTCAGAATAAAGTTGATCTCATTCAGGAGAATGTGGCCATTAACCAACATGAGGCAATCAGGAAGTTTATTCAGGGAACTGTAGCTGATAATGCACCAGTGGTGCCAATTTCTGCTCAGTTGAAGTATAATATTGACGTCGTGTGTGAATACATTGTAAAAAAGATCCCCATTCCAGAAAGGAACTTTATCTCACCTCCCAATATGATTGTTATCCGTTCTTTTGACGTCAATAAACCTGGGTACGAGGTTGATGAGATTAGAGGTGGAGTGGCTGGTGGAAGTATCCTCAGGGGTGTTCTGAAAGTCAACCAATTTATTGAGGTTCGTCCTGGGATTGTTGTTAAAGACGAGAGTGGAAATATCAAGTGCACGCCAATATATTCTAGAATTGTTTCATTGTATGCTGAGCAAAATGAGTTGCAATTTGCGGTGCCAGGAGGTCTTATTGGTGTTGGAACAACCATGGATCCCACTTTGACACGTGCTGATAGGTTAGTGGGTCAAGTTCTTGGTGAAGTTGGGTCACTCCCTGAAGTATTTGTTGAGCTTGAGGTCAACTTCTTCTTGTTGAGAAGGCTTCTGGGGGTCAGGACAAAGGGGTCTGAGAAGCAGGGAAAGGTCTCAAAGCTGGTCAAGGGCGAGATCCTCATGTTGAATATAGGATCCATGTCTACAGGGGCTAGGGTTCTTGCTGTAAGGAACGATTTGGCAAAGTTGCAACTCACGTCTCCAGTTTGCACCAGCAAAGGAGAGAAAATTGCCCTCAGTCGACGTGTTGAGAAGCATTGGCGTCTTATTGGCTGGGGTCAGATTCAAGCTGGAACAACCCTTGATGTCCCACCATGCCCAATTTGA

Protein Analysis

465

Amino Acids

50.86

Weight (kDa)

8.88

Isoelectric Point (pI)

40.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GTP_EFTU PF00009 32 - 236 7.8e-26 Elongation factor Tu GTP binding domain
GTP_EFTU_D2 PF03144 268 - 350 2.4e-08 Elongation factor Tu domain 2
eIF2_C PF09173 362 - 451 2e-32 Initiation factor eIF2 gamma, C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1138
AatII GACGTC 2 cut(s) 678, 768
AccB1I GGYRCC 3 cut(s) 419, 640, 970
AccI GTMKAC 2 cut(s) 1211, 1309
AciI CCGC 2 cut(s) 423, 968
AclWI GGATC 6 cut(s) 697, 1001, 1014, 1177, 1197, 1210
AcoI YGGCCR 1 cut(s) 573
AcuI CTGAAG 3 cut(s) 93, 524, 1092
AcvI CACGTG 1 cut(s) 1022
AcyI GRCGYC 3 cut(s) 675, 765, 1330
AfaI GTAC 2 cut(s) 109, 782
AfeI AGCGCT 1 cut(s) 257
AfiI CCNNNNNNNGG 1 cut(s) 589
AflIII ACRYGT 3 cut(s) 361, 1019, 1312
AgsI TTSAA 5 cut(s) 509, 524, 661, 1195, 1355
AjiI CACGTC 2 cut(s) 1266, 1313
AjnI CCWGG 4 cut(s) 325, 775, 868, 973
AluBI AGCT 7 cut(s) 190, 214, 468, 623, 1087, 1168, 1358
AluI AGCT 7 cut(s) 190, 214, 468, 623, 1087, 1168, 1358
Alw21I GWGCWC 1 cut(s) 911
Alw26I GTCTC 3 cut(s) 352, 1165, 1272
Alw44I GTGCAC 1 cut(s) 907
AlwI GGATC 6 cut(s) 697, 1001, 1014, 1177, 1197, 1210
Ama87I CYCGRG 1 cut(s) 382
Aor51HI AGCGCT 1 cut(s) 257
AoxI GGCC 1 cut(s) 573
ApaLI GTGCAC 1 cut(s) 907
ApeKI GCWGC 3 cut(s) 258, 455, 500
Asp700I GAANNNNTTC 1 cut(s) 931
AspLEI GCGC 2 cut(s) 198, 258
AsuC2I CCSGG 2 cut(s) 383, 384
AsuHPI GGTGA 2 cut(s) 723, 1064
AvaI CYCGRG 1 cut(s) 382
AxyI CCTNAGG 1 cut(s) 827
BaeGI GKGCMC 1 cut(s) 911
BalI TGGCCA 1 cut(s) 575
BamHI GGATCC 2 cut(s) 1006, 1202
BanI GGYRCC 3 cut(s) 419, 640, 970
BbrPI CACGTG 1 cut(s) 1022
BbsI GAAGAC 2 cut(s) 255, 512
Bbv12I GWGCWC 1 cut(s) 911
BbvI GCAGC 3 cut(s) 245, 442, 487
BccI CCATC 2 cut(s) 13, 265
BciT130I CCWGG 4 cut(s) 327, 777, 870, 975
BciVI GTATCC 1 cut(s) 833
BcnI CCSGG 2 cut(s) 383, 384
BcoDI GTCTC 3 cut(s) 352, 1165, 1272
BfaI CTAG 2 cut(s) 924, 1221
BfmI CTRYAG 3 cut(s) 340, 618, 1212
BfoI RGCGCY 1 cut(s) 259
BfuI GTATCC 1 cut(s) 833
BisI GCNGC 4 cut(s) 259, 423, 456, 501
BlpI GCTNAGC 1 cut(s) 945
BlsI GCNGC 4 cut(s) 260, 424, 457, 502
Bme1390I CCNGG 6 cut(s) 327, 383, 384, 777, 870, 975
BmeT110I CYCGRG 1 cut(s) 382
BmgBI CACGTC 2 cut(s) 1266, 1313
BmiI GGNNCC 5 cut(s) 421, 642, 972, 1008, 1204
BmrFI CCNGG 6 cut(s) 327, 383, 384, 777, 870, 975
BmsI GCATC 3 cut(s) 67, 295, 502
BoxI GACNNNNGTC 1 cut(s) 364
BpiI GAAGAC 2 cut(s) 255, 512
BpmI CTGGAG 2 cut(s) 212, 1254
Bpu1102I GCTNAGC 1 cut(s) 945
BpuEI CTTGAG 1 cut(s) 1109
BpuMI CCSGG 2 cut(s) 383, 384
BsaAI YACGTR 1 cut(s) 1022
BsaBI GATNNNNATC 1 cut(s) 749
BsaHI GRCGYC 3 cut(s) 675, 765, 1330
BsaI GGTCTC 1 cut(s) 1165
BsaJI CCNNGG 4 cut(s) 382, 776, 869, 1002
Bsc4I CCNNNNNNNGG 1 cut(s) 589
Bse1I ACTGG 3 cut(s) 45, 635, 1271
Bse21I CCTNAGG 1 cut(s) 827
Bse3DI GCAATG 1 cut(s) 450
Bse8I GATNNNNATC 1 cut(s) 749
BseBI CCWGG 4 cut(s) 327, 777, 870, 975
BseDI CCNNGG 4 cut(s) 382, 776, 869, 1002
BseGI GGATG 3 cut(s) 49, 58, 351
BseJI GATNNNNATC 1 cut(s) 749
BseLI CCNNNNNNNGG 1 cut(s) 589
BseMI GCAATG 1 cut(s) 450
BseMII CTCAG 7 cut(s) 23, 480, 668, 841, 936, 1134, 1318
BseNI ACTGG 3 cut(s) 45, 635, 1271
BseRI GAGGAG 1 cut(s) 300
BseSI GKGCMC 1 cut(s) 911
BseXI GCAGC 3 cut(s) 245, 442, 487
BseYI CCCAGC 1 cut(s) 1341
Bsh1285I CGRYCG 1 cut(s) 269
BshFI GGCC 1 cut(s) 575
BshNI GGYRCC 3 cut(s) 419, 640, 970
BsiEI CGRYCG 1 cut(s) 269
BsiHKAI GWGCWC 1 cut(s) 911
BsiHKCI CYCGRG 1 cut(s) 382
BsiSI CCGG 1 cut(s) 383
BslFI GGGAC 2 cut(s) 456, 1361
BslI CCNNNNNNNGG 1 cut(s) 589
BsmAI GTCTC 3 cut(s) 352, 1165, 1272
BsmBI CGTCTC 1 cut(s) 1272
BsmFI GGGAC 2 cut(s) 456, 1361
BsnI GGCC 1 cut(s) 575
Bso31I GGTCTC 1 cut(s) 1165
BsoBI CYCGRG 1 cut(s) 382
Bsp1286I GDGCHC 1 cut(s) 911
Bsp143I GATC 5 cut(s) 553, 702, 1006, 1182, 1202
Bsp1720I GCTNAGC 1 cut(s) 945
Bsp19I CCATGG 1 cut(s) 1002
BspACI CCGC 2 cut(s) 423, 968
BspANI GGCC 1 cut(s) 575
BspCNI CTCAG 7 cut(s) 24, 481, 667, 840, 937, 1135, 1317
BspLI GGNNCC 5 cut(s) 421, 642, 972, 1008, 1204
BspMAI CTGCAG 1 cut(s) 344
BspPI GGATC 6 cut(s) 697, 1001, 1014, 1177, 1197, 1210
BspT107I GGYRCC 3 cut(s) 419, 640, 970
BspTNI GGTCTC 1 cut(s) 1165
BsrDI GCAATG 1 cut(s) 450
BsrI ACTGG 3 cut(s) 45, 635, 1271
BssECI CCNNGG 4 cut(s) 382, 776, 869, 1002
BssMI GATC 5 cut(s) 553, 702, 1006, 1182, 1202
BssNI GRCGYC 3 cut(s) 675, 765, 1330
BssT1I CCWWGG 1 cut(s) 1002
Bst2UI CCWGG 4 cut(s) 327, 777, 870, 975
Bst4CI ACNGT 3 cut(s) 142, 172, 619
BstACI GRCGYC 3 cut(s) 675, 765, 1330
BstBAI YACGTR 1 cut(s) 1022
BstC8I GCNNGC 1 cut(s) 911
BstDEI CTNAG 7 cut(s) 32, 489, 654, 827, 945, 1143, 1304
BstDSI CCRYGG 1 cut(s) 1002
BstF5I GGATG 3 cut(s) 49, 58, 351
BstH2I RGCGCY 1 cut(s) 259
BstHHI GCGC 2 cut(s) 198, 258
BstKTI GATC 5 cut(s) 556, 705, 1009, 1185, 1205
BstMAI GTCTC 3 cut(s) 352, 1165, 1272
BstMBI GATC 5 cut(s) 553, 702, 1006, 1182, 1202
BstMCI CGRYCG 1 cut(s) 269
BstMWI GCNNNNNNNGC 2 cut(s) 281, 629
BstNI CCWGG 4 cut(s) 327, 777, 870, 975
BstNSI RCATGY 1 cut(s) 365
BstPAI GACNNNNGTC 1 cut(s) 364
BstSCI CCNGG 6 cut(s) 325, 381, 382, 775, 868, 973
BstSFI CTRYAG 3 cut(s) 340, 618, 1212
BstSLI GKGCMC 1 cut(s) 911
BstV1I GCAGC 3 cut(s) 245, 442, 487
BstV2I GAAGAC 2 cut(s) 255, 512
BstX2I RGATCY 4 cut(s) 702, 1006, 1182, 1202
BstYI RGATCY 4 cut(s) 702, 1006, 1182, 1202
Bsu36I CCTNAGG 1 cut(s) 827
BsuI GTATCC 1 cut(s) 833
BsuRI GGCC 1 cut(s) 575
BtgI CCRYGG 1 cut(s) 1002
BtrI CACGTC 2 cut(s) 1266, 1313
BtsCI GGATG 3 cut(s) 49, 58, 351
BtsIMutI CAGTG 1 cut(s) 642
Cac8I GCNNGC 1 cut(s) 911
CfoI GCGC 2 cut(s) 198, 258
Cfr9I CCCGGG 1 cut(s) 382
CseI GACGC 2 cut(s) 506, 1319
Csp6I GTAC 2 cut(s) 108, 781
CviAII CATG 8 cut(s) 119, 128, 362, 587, 1003, 1189, 1207, 1383
CviQI GTAC 2 cut(s) 108, 781
DdeI CTNAG 7 cut(s) 32, 489, 654, 827, 945, 1143, 1304
DpnI GATC 5 cut(s) 555, 704, 1008, 1184, 1204
DpnII GATC 5 cut(s) 553, 702, 1006, 1182, 1202
DraI TTTAAA 1 cut(s) 181
DrdI GACNNNNNNGTC 1 cut(s) 1138
DseDI GACNNNNNNGTC 1 cut(s) 1138
EaeI YGGCCR 1 cut(s) 573
Eco130I CCWWGG 1 cut(s) 1002
Eco31I GGTCTC 1 cut(s) 1165
Eco47III AGCGCT 1 cut(s) 257
Eco57I CTGAAG 3 cut(s) 93, 524, 1092
Eco72I CACGTG 1 cut(s) 1022
Eco81I CCTNAGG 1 cut(s) 827
Eco88I CYCGRG 1 cut(s) 382
EcoRII CCWGG 4 cut(s) 325, 775, 868, 973
EcoT14I CCWWGG 1 cut(s) 1002
ErhI CCWWGG 1 cut(s) 1002
Esp3I CGTCTC 1 cut(s) 1272
FaeI CATG 8 cut(s) 122, 131, 365, 590, 1006, 1192, 1210, 1386
FaqI GGGAC 2 cut(s) 456, 1361
FatI CATG 8 cut(s) 118, 127, 361, 586, 1002, 1188, 1206, 1382
FauNDI CATATG 1 cut(s) 286
FblI GTMKAC 2 cut(s) 1211, 1309
Fnu4HI GCNGC 4 cut(s) 259, 423, 456, 501
FokI GGATG 3 cut(s) 45, 56, 358
Fsp4HI GCNGC 4 cut(s) 259, 423, 456, 501
FspBI CTAG 2 cut(s) 924, 1221
GlaI GCGC 2 cut(s) 197, 257
GluI GCNGC 4 cut(s) 259, 423, 456, 501
GsaI CCCAGC 1 cut(s) 1345
GsuI CTGGAG 2 cut(s) 212, 1254
HaeII RGCGCY 1 cut(s) 259
HaeIII GGCC 1 cut(s) 575
HapII CCGG 1 cut(s) 383
HgaI GACGC 2 cut(s) 506, 1319
HhaI GCGC 2 cut(s) 198, 258
Hin1I GRCGYC 3 cut(s) 675, 765, 1330
Hin1II CATG 8 cut(s) 122, 131, 365, 590, 1006, 1192, 1210, 1386
Hin6I GCGC 2 cut(s) 196, 256
HinP1I GCGC 2 cut(s) 196, 256
HincII GTYRAC 4 cut(s) 138, 847, 1096, 1310
HindII GTYRAC 4 cut(s) 138, 847, 1096, 1310
HindIII AAGCTT 1 cut(s) 212
HinfI GANTC 1 cut(s) 1351
HpaII CCGG 1 cut(s) 383
HphI GGTGA 2 cut(s) 723, 1064
Hpy166II GTNNAC 7 cut(s) 38, 138, 847, 909, 1096, 1212, 1310
Hpy188I TCNGA 6 cut(s) 168, 490, 543, 840, 1144, 1350
Hpy188III TCNNGA 6 cut(s) 389, 563, 598, 713, 924, 1129
Hpy8I GTNNAC 7 cut(s) 38, 138, 847, 909, 1096, 1212, 1310
Hpy99I CGWCG 2 cut(s) 680, 1314
HpyAV CCTTC 1 cut(s) 1107
HpyCH4III ACNGT 3 cut(s) 142, 172, 619
HpyCH4IV ACGT 5 cut(s) 675, 765, 1021, 1265, 1312
HpyCH4V TGCA 8 cut(s) 58, 230, 342, 632, 909, 961, 1258, 1278
HpyF10VI GCNNNNNNNGC 2 cut(s) 281, 629
HpyF3I CTNAG 7 cut(s) 32, 489, 654, 827, 945, 1143, 1304
HpySE526I ACGT 5 cut(s) 675, 765, 1021, 1265, 1312
Hsp92I GRCGYC 3 cut(s) 675, 765, 1330
Hsp92II CATG 8 cut(s) 122, 131, 365, 590, 1006, 1192, 1210, 1386
HspAI GCGC 2 cut(s) 196, 256
Kzo9I GATC 5 cut(s) 553, 702, 1006, 1182, 1202
LmnI GCTCC 4 cut(s) 22, 193, 313, 437
Lsp1109I GCAGC 3 cut(s) 245, 442, 487
LweI GCATC 3 cut(s) 67, 295, 502
MaeI CTAG 2 cut(s) 924, 1221
MaeII ACGT 5 cut(s) 675, 765, 1021, 1265, 1312
MaeIII GTNAC 3 cut(s) 46, 386, 1062
MalI GATC 5 cut(s) 555, 704, 1008, 1184, 1204
MboI GATC 5 cut(s) 553, 702, 1006, 1182, 1202
MboII GAAGA 5 cut(s) 260, 314, 512, 530, 1093
MflI RGATCY 4 cut(s) 702, 1006, 1182, 1202
MhlI GDGCHC 1 cut(s) 911
MlsI TGGCCA 1 cut(s) 575
MluNI TGGCCA 1 cut(s) 575
MmeI TCCRAC 1 cut(s) 973
Mox20I TGGCCA 1 cut(s) 575
MroXI GAANNNNTTC 1 cut(s) 931
MscI TGGCCA 1 cut(s) 575
MseI TTAA 4 cut(s) 180, 414, 579, 882
Msp20I TGGCCA 1 cut(s) 575
MspI CCGG 1 cut(s) 383
MspR9I CCNGG 6 cut(s) 327, 383, 384, 777, 870, 975
MvaI CCWGG 4 cut(s) 327, 777, 870, 975
MwoI GCNNNNNNNGC 2 cut(s) 281, 629
NciI CCSGG 2 cut(s) 383, 384
NcoI CCATGG 1 cut(s) 1002
NdeI CATATG 1 cut(s) 286
NdeII GATC 5 cut(s) 553, 702, 1006, 1182, 1202
NlaIII CATG 8 cut(s) 122, 131, 365, 590, 1006, 1192, 1210, 1386
NlaIV GGNNCC 5 cut(s) 421, 642, 972, 1008, 1204
NmuCI GTSAC 2 cut(s) 386, 1062
NspI RCATGY 1 cut(s) 365
PciI ACATGT 1 cut(s) 361
PdmI GAANNNNTTC 1 cut(s) 931
PfeI GAWTC 1 cut(s) 1351
PfoI TCCNGGA 1 cut(s) 325
PkrI GCNGC 4 cut(s) 260, 424, 457, 502
PmaCI CACGTG 1 cut(s) 1022
PmlI CACGTG 1 cut(s) 1022
Ppu21I YACGTR 1 cut(s) 1022
PscI ACATGT 1 cut(s) 361
PshAI GACNNNNGTC 1 cut(s) 364
Psp6I CCWGG 4 cut(s) 325, 775, 868, 973
PspCI CACGTG 1 cut(s) 1022
PspFI CCCAGC 1 cut(s) 1341
PspGI CCWGG 4 cut(s) 325, 775, 868, 973
PspN4I GGNNCC 5 cut(s) 421, 642, 972, 1008, 1204
PstI CTGCAG 1 cut(s) 344
PsuI RGATCY 4 cut(s) 702, 1006, 1182, 1202
RsaI GTAC 2 cut(s) 109, 782
RsaNI GTAC 2 cut(s) 108, 781
SalI GTCGAC 1 cut(s) 1308
SaqAI TTAA 4 cut(s) 180, 414, 579, 882
SatI GCNGC 4 cut(s) 259, 423, 456, 501
Sau3AI GATC 5 cut(s) 553, 702, 1006, 1182, 1202
ScrFI CCNGG 6 cut(s) 327, 383, 384, 777, 870, 975
SduI GDGCHC 1 cut(s) 911
SfaNI GCATC 3 cut(s) 67, 295, 502
SfcI CTRYAG 3 cut(s) 340, 618, 1212
SmaI CCCGGG 1 cut(s) 384
SmlI CTYRAG 1 cut(s) 1088
SmoI CTYRAG 1 cut(s) 1088
SsiI CCGC 2 cut(s) 423, 968
SspI AATATT 2 cut(s) 103, 670
SspMI CTAG 2 cut(s) 924, 1221
StyD4I CCNGG 6 cut(s) 325, 381, 382, 775, 868, 973
StyI CCWWGG 1 cut(s) 1002
TaaI ACNGT 3 cut(s) 142, 172, 619
TaiI ACGT 5 cut(s) 678, 768, 1024, 1268, 1315
TaqI TCGA 3 cut(s) 5, 265, 1309
TaqII GACCGA 1 cut(s) 283
TauI GCSGC 1 cut(s) 425
TfiI GAWTC 1 cut(s) 1351
Tru1I TTAA 4 cut(s) 180, 414, 579, 882
Tru9I TTAA 4 cut(s) 180, 414, 579, 882
TscAI CASTG 1 cut(s) 642
TseFI GTSAC 2 cut(s) 386, 1062
TseI GCWGC 3 cut(s) 258, 455, 500
Tsp45I GTSAC 2 cut(s) 386, 1062
TspDTI ATGAA 3 cut(s) 362, 477, 924
TspGWI ACGGA 2 cut(s) 450, 743
TspMI CCCGGG 1 cut(s) 382
TspRI CASTG 1 cut(s) 642
VneI GTGCAC 1 cut(s) 907
XbaI TCTAGA 1 cut(s) 923
XceI RCATGY 1 cut(s) 365
XmaI CCCGGG 1 cut(s) 382
XmiI GTMKAC 2 cut(s) 1211, 1309
XmnI GAANNNNTTC 1 cut(s) 931
XspI CTAG 2 cut(s) 924, 1221
ZraI GACGTC 2 cut(s) 676, 766
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.