AT2G18720

Eukaryotic translation initiation factor 2 subunit gamma-like

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
8114785 .. 8117085
2301 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G18720.3

Sequence Viewer

Length: 1413 bp
ATGAAATCTGTCGTAATGTCGAAGAACAAGGGCTTAGCTGAACAAGATCTAAGTAAACTTGATGTAGCTCAGCTGCATCCTCTCTCTCCTGAGGTCATCTCTCGTCAAGCCACCATTAACATAGGAACCATTGGCCATGTCGCTCACGGGAAATCGACAATCGTGAAAGCCGTTTCCGGTGTGCACACTGTCAAATTCAAGAGTGAATTGGAGCGTAACATTACCATTAAACTTGGTTACGCAAACGCAAAGATTTACAAATGTGAAAAATGCCCTAGACCAGTAGCCTACAAGTCTTTCGGGAGTGGCAAAGAAGACAACCCAAGTTGTGATGTCTCTGGACATGAGAAGTACAAGATGAAACTACTAAGACATGTCTCATTTGTTGATTGCCCGGGACACGATATCCTAATGGCGACAATGCTGAATGGAGCAGCGATTATGGATGGTGCTTTACTAATCATTGCTGCGAATGAGACATGTCCACAACCACAAACAGCTGAACATCTTGCTTCTGTTGATATGATGCATCTTAAAGATATCATAATCATTCAGAACAAGATTGATCTCATCCAAGAAAACGAGGCTATTAAACAGCACGAGGACATCCAGAGATTTATAACGAACACGAATGCGGAAGGTGCTCCTATAGTTCCTGTCTCAGCGCAACTGAAATACAACATCGATGTTTTGTGTGAGTACATTGTCAAGAAGATTCCACTCCCTGTGAGGGATTTTGTGTCACCTCCAAGAATGATTGTGATTCGTTCTTTTGATGTCAATAAACCTGGCTCTGATTATGATGGTATGAAAGGTGGAGTTGCAGGTGGGAGTATCCTTCAGGGTGTTTTGAAGGTGGGGCATATAATAGAGATAAGACCTGGAATCACTAGAAAAGATGAGAATGGAGACACTAAATGCACTCCCATTTACACGCGTATAACTTCATTGTACGCGGAACAGAACGAGCTTCAGTTTGCTGTCCCGGGAGGTTTGATTGGAATTGGGACAAGCATGGATCCTACGCTTACGCGTGGTGATAGGTTAGTTGGTCAAGTCCTTGGTGAAATAGGTACTCTCCCTGATGTCTATGTTGAACTTGAAGTGAGTTTCCAGCTTCTGACACGTCTCATTGGAGTGAAGACAAAGGAAACAGAGAGGCAAATGAGAGTGTCAAAGCTAGTCAAGGGAGAGATACTGATGTTGAATATCGGATCGATGTCTACGGGAGCTATGGTTATTGGAGTAAAGAAAGATATGGTGAAAGTTAATCTGACACTCCCTGTGTGCACCAGCATTGGAGAGAAAGTGGCTATAAGTCGCCGTGTGGATAGGCATTGGCGTTTGATCGGTCGCGGTCAGATTGAGGCTGGAACCACCATTTTTATCCCTTCTCCTCCTTCTTTGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

470

Amino Acids

51.33

Weight (kDa)

8.91

Isoelectric Point (pI)

38.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GTP_EFTU PF00009 33 - 149 4.5e-21 Elongation factor Tu GTP binding domain
GTP_EFTU_D2 PF03144 181 - 262 2.2e-10 Elongation factor Tu domain 2
eIF2_C PF09173 275 - 364 1.1e-30 Initiation factor eIF2 gamma, C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 620
AarI CACCTGC 1 cut(s) 815
Acc36I ACCTGC 1 cut(s) 815
AccI GTMKAC 1 cut(s) 1223
AccII CGCG 4 cut(s) 937, 956, 1033, 1356
AciI CCGC 3 cut(s) 635, 956, 1356
AclWI GGATC 3 cut(s) 1013, 1026, 1222
AcoI YGGCCR 1 cut(s) 133
AcsI RAATTY 1 cut(s) 194
AcuI CTGAAG 2 cut(s) 824, 956
AfaI GTAC 4 cut(s) 353, 701, 953, 1075
AfiI CCNNNNNNNGG 1 cut(s) 730
AflIII ACRYGT 5 cut(s) 373, 479, 935, 1031, 1124
AgsI TTSAA 5 cut(s) 199, 853, 1097, 1103, 1207
AjiI CACGTC 1 cut(s) 1127
AjnI CCWGG 2 cut(s) 787, 880
AluBI AGCT 8 cut(s) 38, 68, 73, 500, 970, 1117, 1180, 1232
AluI AGCT 8 cut(s) 38, 68, 73, 500, 970, 1117, 1180, 1232
Alw21I GWGCWC 3 cut(s) 186, 646, 1292
Alw26I GTCTC 6 cut(s) 340, 382, 470, 664, 903, 1133
Alw44I GTGCAC 2 cut(s) 182, 1288
AlwI GGATC 3 cut(s) 1013, 1026, 1222
AlwNI CAGNNNCTG 1 cut(s) 1120
Ama87I CYCGRG 2 cut(s) 394, 985
AoxI GGCC 1 cut(s) 133
ApaLI GTGCAC 2 cut(s) 182, 1288
ApeKI GCWGC 3 cut(s) 73, 434, 467
ApoI RAATTY 1 cut(s) 194
AspLEI GCGC 1 cut(s) 667
AsuC2I CCSGG 4 cut(s) 395, 396, 986, 987
AsuHPI GGTGA 4 cut(s) 735, 1049, 1076, 1273
AvaI CYCGRG 2 cut(s) 394, 985
AxyI CCTNAGG 1 cut(s) 90
BaeGI GKGCMC 2 cut(s) 186, 1292
BaeI ACNNNNGTAYC 2 cut(s) 1187, 1220
BalI TGGCCA 1 cut(s) 135
BamHI GGATCC 1 cut(s) 1018
BauI CACGAG 1 cut(s) 599
BbsI GAAGAC 2 cut(s) 321, 1148
Bbv12I GWGCWC 3 cut(s) 186, 646, 1292
BbvI GCAGC 3 cut(s) 60, 446, 454
BccI CCATC 2 cut(s) 440, 797
BceAI ACGGC 2 cut(s) 155, 1308
BciT130I CCWGG 2 cut(s) 789, 882
BciVI GTATCC 1 cut(s) 845
BcnI CCSGG 4 cut(s) 395, 396, 986, 987
BcoDI GTCTC 6 cut(s) 340, 382, 470, 664, 903, 1133
BfaI CTAG 3 cut(s) 276, 891, 1181
BfmI CTRYAG 1 cut(s) 648
BfuAI ACCTGC 1 cut(s) 815
BfuI GTATCC 1 cut(s) 845
BglII AGATCT 1 cut(s) 46
BisI GCNGC 3 cut(s) 74, 435, 468
BlpI GCTNAGC 2 cut(s) 34, 69
BlsI GCNGC 3 cut(s) 75, 436, 469
Bme1390I CCNGG 6 cut(s) 395, 396, 789, 882, 986, 987
BmeT110I CYCGRG 2 cut(s) 394, 985
BmgBI CACGTC 1 cut(s) 1127
BmiI GGNNCC 3 cut(s) 127, 1020, 1375
BmrFI CCNGG 6 cut(s) 395, 396, 789, 882, 986, 987
BmsI GCATC 3 cut(s) 85, 516, 538
BpiI GAAGAC 2 cut(s) 321, 1148
BplI GAGNNNNNCTC 2 cut(s) 83, 115
Bpu1102I GCTNAGC 2 cut(s) 34, 69
BpuMI CCSGG 4 cut(s) 395, 396, 986, 987
Bsa29I ATCGAT 2 cut(s) 684, 1217
BsaJI CCNNGG 3 cut(s) 394, 985, 1060
BsaWI WCCGGW 1 cut(s) 176
BsaXI ACNNNNNCTCC 4 cut(s) 1221, 1251, 1293, 1323
Bsc4I CCNNNNNNNGG 1 cut(s) 730
Bse1I ACTGG 1 cut(s) 281
Bse21I CCTNAGG 1 cut(s) 90
Bse3DI GCAATG 1 cut(s) 462
BseBI CCWGG 2 cut(s) 789, 882
BseCI ATCGAT 2 cut(s) 684, 1217
BseDI CCNNGG 3 cut(s) 394, 985, 1060
BseGI GGATG 4 cut(s) 76, 451, 570, 606
BseLI CCNNNNNNNGG 1 cut(s) 730
BseMI GCAATG 1 cut(s) 462
BseMII CTCAG 3 cut(s) 81, 83, 675
BseNI ACTGG 1 cut(s) 281
BseRI GAGGAG 1 cut(s) 1386
BseSI GKGCMC 2 cut(s) 186, 1292
BseXI GCAGC 3 cut(s) 60, 446, 454
Bsh1236I CGCG 4 cut(s) 937, 956, 1033, 1356
Bsh1285I CGRYCG 1 cut(s) 1354
BshFI GGCC 1 cut(s) 135
BshVI ATCGAT 2 cut(s) 684, 1217
BsiEI CGRYCG 1 cut(s) 1354
BsiHKAI GWGCWC 3 cut(s) 186, 646, 1292
BsiHKCI CYCGRG 2 cut(s) 394, 985
BsiSI CCGG 3 cut(s) 177, 395, 986
BslFI GGGAC 3 cut(s) 411, 968, 1021
BslI CCNNNNNNNGG 1 cut(s) 730
BsmAI GTCTC 6 cut(s) 340, 382, 470, 664, 903, 1133
BsmBI CGTCTC 1 cut(s) 1133
BsmFI GGGAC 3 cut(s) 411, 968, 1021
BsmI GAATGC 1 cut(s) 637
BsnI GGCC 1 cut(s) 135
BsoBI CYCGRG 2 cut(s) 394, 985
Bsp1286I GDGCHC 3 cut(s) 186, 646, 1292
Bsp143I GATC 5 cut(s) 46, 565, 1018, 1214, 1347
Bsp1720I GCTNAGC 2 cut(s) 34, 69
BspACI CCGC 3 cut(s) 635, 956, 1356
BspANI GGCC 1 cut(s) 135
BspCNI CTCAG 3 cut(s) 82, 82, 674
BspDI ATCGAT 2 cut(s) 684, 1217
BspFNI CGCG 4 cut(s) 937, 956, 1033, 1356
BspLI GGNNCC 3 cut(s) 127, 1020, 1375
BspMI ACCTGC 1 cut(s) 815
BspPI GGATC 3 cut(s) 1013, 1026, 1222
BsrDI GCAATG 1 cut(s) 462
BsrI ACTGG 1 cut(s) 281
BssECI CCNNGG 3 cut(s) 394, 985, 1060
BssMI GATC 5 cut(s) 46, 565, 1018, 1214, 1347
BssSI CACGAG 1 cut(s) 599
BssT1I CCWWGG 1 cut(s) 1060
Bst2BI CACGAG 1 cut(s) 599
Bst2UI CCWGG 2 cut(s) 789, 882
Bst4CI ACNGT 1 cut(s) 190
BstDEI CTNAG 6 cut(s) 34, 50, 69, 90, 368, 661
BstF5I GGATG 4 cut(s) 76, 451, 570, 606
BstFNI CGCG 4 cut(s) 937, 956, 1033, 1356
BstHHI GCGC 1 cut(s) 667
BstKTI GATC 5 cut(s) 49, 568, 1021, 1217, 1350
BstMAI GTCTC 6 cut(s) 340, 382, 470, 664, 903, 1133
BstMBI GATC 5 cut(s) 46, 565, 1018, 1214, 1347
BstMCI CGRYCG 1 cut(s) 1354
BstMWI GCNNNNNNNGC 1 cut(s) 641
BstNI CCWGG 2 cut(s) 789, 882
BstNSI RCATGY 2 cut(s) 377, 483
BstSCI CCNGG 6 cut(s) 393, 394, 787, 880, 984, 985
BstSFI CTRYAG 1 cut(s) 648
BstSLI GKGCMC 2 cut(s) 186, 1292
BstUI CGCG 4 cut(s) 937, 956, 1033, 1356
BstV1I GCAGC 3 cut(s) 60, 446, 454
BstV2I GAAGAC 2 cut(s) 321, 1148
BstX2I RGATCY 2 cut(s) 46, 1018
BstYI RGATCY 2 cut(s) 46, 1018
Bsu15I ATCGAT 2 cut(s) 684, 1217
Bsu36I CCTNAGG 1 cut(s) 90
BsuI GTATCC 1 cut(s) 845
BsuRI GGCC 1 cut(s) 135
BsuTUI ATCGAT 2 cut(s) 684, 1217
BtrI CACGTC 1 cut(s) 1127
BtsCI GGATG 4 cut(s) 76, 451, 570, 606
BtsIMutI CAGTG 1 cut(s) 186
BveI ACCTGC 1 cut(s) 815
CaiI CAGNNNCTG 1 cut(s) 1120
CfoI GCGC 1 cut(s) 667
Cfr9I CCCGGG 2 cut(s) 394, 985
ClaI ATCGAT 2 cut(s) 684, 1217
Csp6I GTAC 4 cut(s) 352, 700, 952, 1074
CviAII CATG 6 cut(s) 137, 344, 374, 480, 1015, 1410
CviQI GTAC 4 cut(s) 352, 700, 952, 1074
DdeI CTNAG 6 cut(s) 34, 50, 69, 90, 368, 661
DpnI GATC 5 cut(s) 48, 567, 1020, 1216, 1349
DpnII GATC 5 cut(s) 46, 565, 1018, 1214, 1347
EaeI YGGCCR 1 cut(s) 133
Eco130I CCWWGG 1 cut(s) 1060
Eco32I GATATC 2 cut(s) 406, 541
Eco57I CTGAAG 2 cut(s) 824, 956
Eco81I CCTNAGG 1 cut(s) 90
Eco88I CYCGRG 2 cut(s) 394, 985
EcoRII CCWGG 2 cut(s) 787, 880
EcoRV GATATC 2 cut(s) 406, 541
EcoT14I CCWWGG 1 cut(s) 1060
EcoT22I ATGCAT 1 cut(s) 531
ErhI CCWWGG 1 cut(s) 1060
Esp3I CGTCTC 1 cut(s) 1133
FaeI CATG 6 cut(s) 140, 347, 377, 483, 1018, 1413
FaqI GGGAC 3 cut(s) 411, 968, 1021
FatI CATG 6 cut(s) 136, 343, 373, 479, 1014, 1409
FblI GTMKAC 1 cut(s) 1223
Fnu4HI GCNGC 3 cut(s) 74, 435, 468
FokI GGATG 4 cut(s) 63, 458, 557, 593
Fsp4HI GCNGC 3 cut(s) 74, 435, 468
FspBI CTAG 3 cut(s) 276, 891, 1181
GlaI GCGC 1 cut(s) 666
GluI GCNGC 3 cut(s) 74, 435, 468
HaeIII GGCC 1 cut(s) 135
HapII CCGG 3 cut(s) 177, 395, 986
HhaI GCGC 1 cut(s) 667
Hin1II CATG 6 cut(s) 140, 347, 377, 483, 1018, 1413
Hin6I GCGC 1 cut(s) 665
HinP1I GCGC 1 cut(s) 665
HinfI GANTC 3 cut(s) 715, 763, 885
HpaII CCGG 3 cut(s) 177, 395, 986
HphI GGTGA 4 cut(s) 735, 1049, 1076, 1273
Hpy166II GTNNAC 5 cut(s) 56, 184, 485, 1224, 1290
Hpy188I TCNGA 6 cut(s) 555, 796, 1122, 1214, 1275, 1362
Hpy188III TCNNGA 7 cut(s) 89, 163, 199, 301, 339, 610, 709
Hpy8I GTNNAC 5 cut(s) 56, 184, 485, 1224, 1290
HpyAV CCTTC 5 cut(s) 632, 847, 848, 1401, 1410
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4IV ACGT 1 cut(s) 1126
HpyCH4V TGCA 6 cut(s) 76, 184, 529, 824, 921, 1290
HpyF10VI GCNNNNNNNGC 1 cut(s) 641
HpyF3I CTNAG 6 cut(s) 34, 50, 69, 90, 368, 661
HpySE526I ACGT 1 cut(s) 1126
Hsp92II CATG 6 cut(s) 140, 347, 377, 483, 1018, 1413
HspAI GCGC 1 cut(s) 665
Kzo9I GATC 5 cut(s) 46, 565, 1018, 1214, 1347
LmnI GCTCC 4 cut(s) 211, 431, 649, 1229
Lsp1109I GCAGC 3 cut(s) 60, 446, 454
LweI GCATC 3 cut(s) 85, 516, 538
MaeI CTAG 3 cut(s) 276, 891, 1181
MaeII ACGT 1 cut(s) 1126
MaeIII GTNAC 3 cut(s) 215, 236, 741
MalI GATC 5 cut(s) 48, 567, 1020, 1216, 1349
MboI GATC 5 cut(s) 46, 565, 1018, 1214, 1347
MboII GAAGA 4 cut(s) 34, 326, 724, 1153
MflI RGATCY 2 cut(s) 46, 1018
MhlI GDGCHC 3 cut(s) 186, 646, 1292
MlsI TGGCCA 1 cut(s) 135
MluCI AATT 3 cut(s) 194, 206, 1002
MluI ACGCGT 2 cut(s) 935, 1031
MluNI TGGCCA 1 cut(s) 135
Mox20I TGGCCA 1 cut(s) 135
Mph1103I ATGCAT 1 cut(s) 531
MscI TGGCCA 1 cut(s) 135
MseI TTAA 5 cut(s) 117, 228, 534, 591, 1269
MslI CAYNNNNRTG 1 cut(s) 1136
Msp20I TGGCCA 1 cut(s) 135
MspA1I CMGCKG 2 cut(s) 73, 500
MspI CCGG 3 cut(s) 177, 395, 986
MspR9I CCNGG 6 cut(s) 395, 396, 789, 882, 986, 987
Mva1269I GAATGC 1 cut(s) 637
MvaI CCWGG 2 cut(s) 789, 882
MvnI CGCG 4 cut(s) 937, 956, 1033, 1356
MwoI GCNNNNNNNGC 1 cut(s) 641
NciI CCSGG 4 cut(s) 395, 396, 986, 987
NdeII GATC 5 cut(s) 46, 565, 1018, 1214, 1347
NlaIII CATG 6 cut(s) 140, 347, 377, 483, 1018, 1413
NlaIV GGNNCC 3 cut(s) 127, 1020, 1375
NmuCI GTSAC 1 cut(s) 741
NsiI ATGCAT 1 cut(s) 531
NspI RCATGY 2 cut(s) 377, 483
PaqCI CACCTGC 1 cut(s) 815
PciI ACATGT 2 cut(s) 373, 479
PcsI WCGNNNNNNNCGW 1 cut(s) 168
PctI GAATGC 1 cut(s) 637
PfeI GAWTC 3 cut(s) 715, 763, 885
PkrI GCNGC 3 cut(s) 75, 436, 469
PscI ACATGT 2 cut(s) 373, 479
PsiI TTATAA 1 cut(s) 620
Psp6I CCWGG 2 cut(s) 787, 880
PspGI CCWGG 2 cut(s) 787, 880
PspN4I GGNNCC 3 cut(s) 127, 1020, 1375
PstNI CAGNNNCTG 1 cut(s) 1120
PsuI RGATCY 2 cut(s) 46, 1018
PvuII CAGCTG 2 cut(s) 73, 500
RsaI GTAC 4 cut(s) 353, 701, 953, 1075
RsaNI GTAC 4 cut(s) 352, 700, 952, 1074
RseI CAYNNNNRTG 1 cut(s) 1136
SaqAI TTAA 5 cut(s) 117, 228, 534, 591, 1269
SatI GCNGC 3 cut(s) 74, 435, 468
Sau3AI GATC 5 cut(s) 46, 565, 1018, 1214, 1347
ScrFI CCNGG 6 cut(s) 395, 396, 789, 882, 986, 987
SduI GDGCHC 3 cut(s) 186, 646, 1292
SfaNI GCATC 3 cut(s) 85, 516, 538
SfcI CTRYAG 1 cut(s) 648
SmaI CCCGGG 2 cut(s) 396, 987
SmiMI CAYNNNNRTG 1 cut(s) 1136
Sse9I AATT 3 cut(s) 194, 206, 1002
SsiI CCGC 3 cut(s) 635, 956, 1356
SspMI CTAG 3 cut(s) 276, 891, 1181
StyD4I CCNGG 6 cut(s) 393, 394, 787, 880, 984, 985
StyI CCWWGG 1 cut(s) 1060
TaaI ACNGT 1 cut(s) 190
TaiI ACGT 1 cut(s) 1129
TaqI TCGA 4 cut(s) 20, 155, 684, 1217
TaqII GACCGA 1 cut(s) 1340
TasI AATT 3 cut(s) 194, 206, 1002
TatI WGTACW 2 cut(s) 351, 699
TfiI GAWTC 3 cut(s) 715, 763, 885
Tru1I TTAA 5 cut(s) 117, 228, 534, 591, 1269
Tru9I TTAA 5 cut(s) 117, 228, 534, 591, 1269
TscAI CASTG 1 cut(s) 193
TseFI GTSAC 1 cut(s) 741
TseI GCWGC 3 cut(s) 73, 434, 467
Tsp45I GTSAC 1 cut(s) 741
TspDTI ATGAA 4 cut(s) 17, 374, 824, 936
TspMI CCCGGG 2 cut(s) 394, 985
TspRI CASTG 1 cut(s) 193
VneI GTGCAC 2 cut(s) 182, 1288
XapI RAATTY 1 cut(s) 194
XceI RCATGY 2 cut(s) 377, 483
XmaI CCCGGG 2 cut(s) 394, 985
XmiI GTMKAC 1 cut(s) 1223
XspI CTAG 3 cut(s) 276, 891, 1181
Zsp2I ATGCAT 1 cut(s) 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.