RLG00000025399

Eukaryotic translation initiation factor 2 subunit

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Forward (+)
45556878 .. 45558938
2061 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025399

Sequence Viewer

Length: 1449 bp
ATGTCCTTCCGCCATTGCTCAGGATCTGAGCAAACTGGATCTAACTCAGTTAGATCCACTCTCGCCGGAAGTTATATCTCGTCAGGCCACGATCAACATTGGCGCAATAGGTCACGTGGCTCATGGTGCGGTGGCTGCCCCCGACCCAACTGCTACAAGTCTTATGGCAGTGGAAAGGAAGACAATCCTCTCTGTGATCGGTGTGGGAGTCTGATGAGGCTGGAGAGACATGTGTCCTTTGTAGATTGCCCCAGTCACGAAGCACTAATGGCTACTATGCTTAATGGTGTGTCCATTATGGATGGAGCGTTACTTGTTGTAGCTGCTGACGAACAGTTTCCCCAAGAACAAACCAAGGAGCATCTGGAAGCTGTTGAAATCATGTCTCTTAAACACAACATTGTGCTTGAAAACAAAGTTGACCTTGTCCAAGAGAAGGCAATCGAGCAGCAAAAGGAGATGAAGGAGTGGTTTCGTGGCACGGTAGCTGAAGATGCAACAATTGTGCCTATTGTTGCTCAGCTGAAGTATAATATCGATGTAGTGAACGAGTACATTGTCAAGAACATCCCCATTCCGAAAAGGGACTTTGCTTCGCCTCCTTATATGAGGATCATACGTTCCTTTGATGTCAACAAACCCGGGTTTGGGAGTGATGACATAAAAGGTGCTGTGGCTGGTGGAACCCTTCTCAGGGGTGTTTTGAAACTGAACCAATTGGTGGAGGTTCGTCCTGGTCTTGTTGTCAAAGATGAGAGGGGGAAATTCTTGAGGTGCACGCCATTGTATTCCAGAATAGTTTCCTTGTTTGCTGAGGAAAACGAGTTACAGTTTGCTGTGCCAGGAGGTCTGATTGGGGTTGGCACAACCTTGGATCCTGCTTTGACTCGCGGCGATAAATTGGTGGGTCAAGTAGTTGGTGATATTGGCTCACTCCCTGATGTGTATGCACAACTTGAGGCGCACTACCACATGACAAAAGGATCAGCTGAGAAGAAAGGGCTATCAAAGTTAAGCAAGAATGACATTGTGATGTTAAATATTGGATCCAAGGCTACAGAAGCAAAGGTTGTTGCTGTGAGGGAAAGTATGGTGAAGTTGCGACTATTCACATCTCCAGTTTGCACGAACATAGGTGACAGAATCGAGCAGCATAAGCCCCGGTATCTTATCGCTTGGGGCGAGATTACAGCTGGGAGAACACTCGATATCGAACCTTGCCCGACTTTAGTAGCTGACTCCACAAATCATCTTGTCCAGATCCTGAGATCTGCTATTGAAACACAAGAAAGACATCAACTCCTCGTATTGTCATCGCCTCTGTCCCTCACTTATCTCCAGCTGTTGAAGCATCATGTCCATCTTAAGCAGCTCAACATCCTCATGTGGCTACAACAGATCCGGAGAATTCCAATGATGAGGAAGCTCTGTGAGGCCATGAAGAATTAG

Protein Analysis

483

Amino Acids

53.72

Weight (kDa)

8.64

Isoelectric Point (pI)

45.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GTP_EFTU PF00009 75 - 191 6.7e-17 Elongation factor Tu GTP binding domain
GTP_EFTU_D2 PF03144 223 - 294 3e-06 Elongation factor Tu domain 2
eIF2_C PF09173 328 - 382 1.3e-09 Initiation factor eIF2 gamma, C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 721
AccII CGCG 1 cut(s) 891
AccIII TCCGGA 1 cut(s) 1401
AciI CCGC 3 cut(s) 10, 129, 891
AcsI RAATTY 2 cut(s) 764, 1407
AcuI CTGAAG 2 cut(s) 510, 545
AcvI CACGTG 1 cut(s) 116
AfaI GTAC 1 cut(s) 554
AfiI CCNNNNNNNGG 6 cut(s) 436, 647, 648, 693, 694, 721
AflII CTTAAG 1 cut(s) 1364
AflIII ACRYGT 1 cut(s) 229
AgsI TTSAA 5 cut(s) 377, 410, 706, 1280, 1348
AjnI CCWGG 2 cut(s) 733, 841
AloI GAACNNNNNNTCC 2 cut(s) 604, 636
Alw21I GWGCWC 1 cut(s) 779
Alw26I GTCTC 2 cut(s) 220, 390
Alw44I GTGCAC 1 cut(s) 775
AlwNI CAGNNNCTG 2 cut(s) 26, 1264
Ama87I CYCGRG 1 cut(s) 641
Aor13HI TCCGGA 1 cut(s) 1401
AoxI GGCC 2 cut(s) 85, 1434
ApaLI GTGCAC 1 cut(s) 775
ApeKI GCWGC 5 cut(s) 135, 323, 448, 1150, 1369
ApoI RAATTY 2 cut(s) 764, 1407
Asp700I GAANNNNTTC 2 cut(s) 336, 799
AspLEI GCGC 2 cut(s) 105, 964
AsuC2I CCSGG 3 cut(s) 642, 643, 1162
AsuHPI GGTGA 3 cut(s) 932, 1105, 1148
AvaI CYCGRG 1 cut(s) 641
BaeGI GKGCMC 1 cut(s) 779
BamHI GGATCC 2 cut(s) 874, 1046
BbrPI CACGTG 1 cut(s) 116
BbsI GAAGAC 1 cut(s) 186
Bbv12I GWGCWC 1 cut(s) 779
BbvCI CCTCAGC 1 cut(s) 813
BbvI GCAGC 5 cut(s) 122, 310, 460, 1162, 1381
BccI CCATC 2 cut(s) 296, 1368
BcgI CGANNNNNNTGC 2 cut(s) 132, 166
BciT130I CCWGG 2 cut(s) 735, 843
BcnI CCSGG 3 cut(s) 642, 643, 1162
BcoDI GTCTC 2 cut(s) 220, 390
BfmI CTRYAG 1 cut(s) 1056
BfrI CTTAAG 1 cut(s) 1364
BglII AGATCT 1 cut(s) 1268
BisI GCNGC 6 cut(s) 136, 324, 449, 892, 1151, 1370
BlpI GCTNAGC 1 cut(s) 519
BlsI GCNGC 6 cut(s) 137, 325, 450, 893, 1152, 1371
Bme1390I CCNGG 5 cut(s) 642, 643, 735, 843, 1162
BmeT110I CYCGRG 1 cut(s) 641
BmiI GGNNCC 3 cut(s) 685, 876, 1048
BmrFI CCNGG 5 cut(s) 642, 643, 735, 843, 1162
BmrI ACTGGG 1 cut(s) 246
BmsI GCATC 3 cut(s) 370, 484, 1360
BmuI ACTGGG 1 cut(s) 246
BoxI GACNNNNGTC 1 cut(s) 232
BpiI GAAGAC 1 cut(s) 186
BpmI CTGGAG 3 cut(s) 242, 1101, 1322
Bpu10I CCTNAGC 2 cut(s) 19, 813
Bpu1102I GCTNAGC 1 cut(s) 519
BpuEI CTTGAG 2 cut(s) 790, 977
BpuMI CCSGG 3 cut(s) 642, 643, 1162
Bsa29I ATCGAT 1 cut(s) 537
BsaAI YACGTR 1 cut(s) 116
BsaJI CCNNGG 5 cut(s) 354, 641, 870, 1050, 1160
BsaWI WCCGGW 1 cut(s) 1401
BsaXI ACNNNNNCTCC 2 cut(s) 1284, 1314
Bsc4I CCNNNNNNNGG 6 cut(s) 436, 647, 648, 693, 694, 721
Bse1I ACTGG 3 cut(s) 40, 252, 1118
Bse3DI GCAATG 1 cut(s) 13
BseAI TCCGGA 1 cut(s) 1401
BseBI CCWGG 2 cut(s) 735, 843
BseCI ATCGAT 1 cut(s) 537
BseDI CCNNGG 5 cut(s) 354, 641, 870, 1050, 1160
BseGI GGATG 3 cut(s) 307, 567, 1377
BseLI CCNNNNNNNGG 6 cut(s) 436, 647, 648, 693, 694, 721
BseMI GCAATG 1 cut(s) 13
BseMII CTCAG 8 cut(s) 18, 33, 60, 533, 706, 804, 981, 1256
BseNI ACTGG 3 cut(s) 40, 252, 1118
BseRI GAGGAG 1 cut(s) 1292
BseSI GKGCMC 1 cut(s) 779
BseXI GCAGC 5 cut(s) 122, 310, 460, 1162, 1381
BseYI CCCAGC 1 cut(s) 1193
Bsh1236I CGCG 1 cut(s) 891
BshFI GGCC 2 cut(s) 87, 1436
BshVI ATCGAT 1 cut(s) 537
BsiHKAI GWGCWC 1 cut(s) 779
BsiHKCI CYCGRG 1 cut(s) 641
BsiSI CCGG 4 cut(s) 66, 642, 1162, 1402
BslFI GGGAC 2 cut(s) 599, 1309
BslI CCNNNNNNNGG 6 cut(s) 436, 647, 648, 693, 694, 721
BsmAI GTCTC 2 cut(s) 220, 390
BsmFI GGGAC 2 cut(s) 599, 1309
BsnI GGCC 2 cut(s) 87, 1436
BsoBI CYCGRG 1 cut(s) 641
Bsp1286I GDGCHC 1 cut(s) 779
Bsp13I TCCGGA 1 cut(s) 1401
Bsp1720I GCTNAGC 1 cut(s) 519
BspACI CCGC 3 cut(s) 10, 129, 891
BspANI GGCC 2 cut(s) 87, 1436
BspCNI CTCAG 8 cut(s) 19, 32, 59, 532, 705, 805, 982, 1257
BspDI ATCGAT 1 cut(s) 537
BspEI TCCGGA 1 cut(s) 1401
BspFNI CGCG 1 cut(s) 891
BspLI GGNNCC 3 cut(s) 685, 876, 1048
BspTI CTTAAG 1 cut(s) 1364
BsrDI GCAATG 1 cut(s) 13
BsrI ACTGG 3 cut(s) 40, 252, 1118
BssECI CCNNGG 5 cut(s) 354, 641, 870, 1050, 1160
BssT1I CCWWGG 3 cut(s) 354, 870, 1050
Bst2UI CCWGG 2 cut(s) 735, 843
Bst4CI ACNGT 3 cut(s) 336, 484, 831
BstAFI CTTAAG 1 cut(s) 1364
BstBAI YACGTR 1 cut(s) 116
BstC8I GCNNGC 1 cut(s) 779
BstDEI CTNAG 8 cut(s) 19, 27, 46, 519, 692, 813, 990, 1265
BstF5I GGATG 3 cut(s) 307, 567, 1377
BstFNI CGCG 1 cut(s) 891
BstHHI GCGC 2 cut(s) 105, 964
BstMAI GTCTC 2 cut(s) 220, 390
BstMWI GCNNNNNNNGC 7 cut(s) 126, 135, 269, 494, 1061, 1156, 1348
BstNI CCWGG 2 cut(s) 735, 843
BstNSI RCATGY 1 cut(s) 233
BstPAI GACNNNNGTC 1 cut(s) 232
BstSCI CCNGG 5 cut(s) 640, 641, 733, 841, 1160
BstSFI CTRYAG 1 cut(s) 1056
BstSLI GKGCMC 1 cut(s) 779
BstUI CGCG 1 cut(s) 891
BstV1I GCAGC 5 cut(s) 122, 310, 460, 1162, 1381
BstV2I GAAGAC 1 cut(s) 186
BstX2I RGATCY 8 cut(s) 23, 38, 53, 874, 1046, 1260, 1268, 1398
BstYI RGATCY 8 cut(s) 23, 38, 53, 874, 1046, 1260, 1268, 1398
Bsu15I ATCGAT 1 cut(s) 537
BsuRI GGCC 2 cut(s) 87, 1436
BsuTUI ATCGAT 1 cut(s) 537
BtgZI GCGATG 1 cut(s) 1299
BtsCI GGATG 3 cut(s) 307, 567, 1377
BtsI GCAGTG 1 cut(s) 175
BtsIMutI CAGTG 1 cut(s) 175
Cac8I GCNNGC 1 cut(s) 779
CaiI CAGNNNCTG 2 cut(s) 26, 1264
CfoI GCGC 2 cut(s) 105, 964
Cfr9I CCCGGG 1 cut(s) 641
ClaI ATCGAT 1 cut(s) 537
Csp6I GTAC 1 cut(s) 553
CviAII CATG 7 cut(s) 123, 230, 382, 973, 1355, 1384, 1438
CviQI GTAC 1 cut(s) 553
DdeI CTNAG 8 cut(s) 19, 27, 46, 519, 692, 813, 990, 1265
Eco130I CCWWGG 3 cut(s) 354, 870, 1050
Eco32I GATATC 1 cut(s) 1210
Eco57I CTGAAG 2 cut(s) 510, 545
Eco72I CACGTG 1 cut(s) 116
Eco88I CYCGRG 1 cut(s) 641
EcoRI GAATTC 1 cut(s) 1407
EcoRII CCWGG 2 cut(s) 733, 841
EcoRV GATATC 1 cut(s) 1210
EcoT14I CCWWGG 3 cut(s) 354, 870, 1050
ErhI CCWWGG 3 cut(s) 354, 870, 1050
FaeI CATG 7 cut(s) 126, 233, 385, 976, 1358, 1387, 1441
FalI AAGNNNNNCTT 2 cut(s) 408, 440
FaqI GGGAC 2 cut(s) 599, 1309
FatI CATG 7 cut(s) 122, 229, 381, 972, 1354, 1383, 1437
Fnu4HI GCNGC 6 cut(s) 136, 324, 449, 892, 1151, 1370
FokI GGATG 3 cut(s) 314, 554, 1364
Fsp4HI GCNGC 6 cut(s) 136, 324, 449, 892, 1151, 1370
GlaI GCGC 2 cut(s) 104, 963
GluI GCNGC 6 cut(s) 136, 324, 449, 892, 1151, 1370
GsaI CCCAGC 1 cut(s) 1197
GsuI CTGGAG 3 cut(s) 242, 1101, 1322
HaeIII GGCC 2 cut(s) 87, 1436
HapII CCGG 4 cut(s) 66, 642, 1162, 1402
HhaI GCGC 2 cut(s) 105, 964
Hin1II CATG 7 cut(s) 126, 233, 385, 976, 1358, 1387, 1441
Hin6I GCGC 2 cut(s) 103, 962
HinP1I GCGC 2 cut(s) 103, 962
HincII GTYRAC 2 cut(s) 421, 634
HindII GTYRAC 2 cut(s) 421, 634
HinfI GANTC 4 cut(s) 208, 886, 1143, 1238
HpaII CCGG 4 cut(s) 66, 642, 1162, 1402
HphI GGTGA 3 cut(s) 932, 1105, 1148
Hpy166II GTNNAC 4 cut(s) 421, 547, 634, 777
Hpy188I TCNGA 4 cut(s) 28, 213, 579, 852
Hpy188III TCNNGA 9 cut(s) 21, 257, 365, 562, 769, 792, 1258, 1264, 1402
Hpy8I GTNNAC 4 cut(s) 421, 547, 634, 777
HpyAV CCTTC 4 cut(s) 16, 430, 457, 698
HpyCH4III ACNGT 3 cut(s) 336, 484, 831
HpyCH4IV ACGT 2 cut(s) 115, 619
HpyCH4V TGCA 4 cut(s) 497, 777, 950, 1125
HpyF10VI GCNNNNNNNGC 7 cut(s) 126, 135, 269, 494, 1061, 1156, 1348
HpyF3I CTNAG 8 cut(s) 19, 27, 46, 519, 692, 813, 990, 1265
HpySE526I ACGT 2 cut(s) 115, 619
Hsp92II CATG 7 cut(s) 126, 233, 385, 976, 1358, 1387, 1441
HspAI GCGC 2 cut(s) 103, 962
Kpn2I TCCGGA 1 cut(s) 1401
LmnI GCTCC 2 cut(s) 305, 358
Lsp1109I GCAGC 5 cut(s) 122, 310, 460, 1162, 1381
LweI GCATC 3 cut(s) 370, 484, 1360
MaeII ACGT 2 cut(s) 115, 619
MaeIII GTNAC 5 cut(s) 111, 254, 309, 825, 1136
MboII GAAGA 3 cut(s) 191, 503, 1006
MfeI CAATTG 2 cut(s) 501, 716
MflI RGATCY 8 cut(s) 23, 38, 53, 874, 1046, 1260, 1268, 1398
MhlI GDGCHC 1 cut(s) 779
MluCI AATT 6 cut(s) 501, 716, 764, 899, 1407, 1444
MlyI GAGTC 3 cut(s) 217, 880, 1232
MroI TCCGGA 1 cut(s) 1401
MroXI GAANNNNTTC 2 cut(s) 336, 799
MseI TTAA 5 cut(s) 282, 390, 1013, 1037, 1365
MslI CAYNNNNRTG 2 cut(s) 1031, 1382
MspA1I CMGCKG 4 cut(s) 523, 989, 1193, 1342
MspCI CTTAAG 1 cut(s) 1364
MspI CCGG 4 cut(s) 66, 642, 1162, 1402
MspR9I CCNGG 5 cut(s) 642, 643, 735, 843, 1162
MunI CAATTG 2 cut(s) 501, 716
MvaI CCWGG 2 cut(s) 735, 843
MvnI CGCG 1 cut(s) 891
MwoI GCNNNNNNNGC 7 cut(s) 126, 135, 269, 494, 1061, 1156, 1348
NciI CCSGG 3 cut(s) 642, 643, 1162
NlaIII CATG 7 cut(s) 126, 233, 385, 976, 1358, 1387, 1441
NlaIV GGNNCC 3 cut(s) 685, 876, 1048
NmuCI GTSAC 3 cut(s) 111, 254, 1136
NspI RCATGY 1 cut(s) 233
PciI ACATGT 1 cut(s) 229
PcsI WCGNNNNNNNCGW 1 cut(s) 1179
PdmI GAANNNNTTC 2 cut(s) 336, 799
PfeI GAWTC 1 cut(s) 1143
PflFI GACNNNGTC 1 cut(s) 425
PflMI CCANNNNNTGG 1 cut(s) 721
PkrI GCNGC 6 cut(s) 137, 325, 450, 893, 1152, 1371
PleI GAGTC 3 cut(s) 216, 880, 1232
PmaCI CACGTG 1 cut(s) 116
PmlI CACGTG 1 cut(s) 116
PpsI GAGTC 3 cut(s) 216, 880, 1232
Ppu21I YACGTR 1 cut(s) 116
PscI ACATGT 1 cut(s) 229
PshAI GACNNNNGTC 1 cut(s) 232
Psp6I CCWGG 2 cut(s) 733, 841
PspCI CACGTG 1 cut(s) 116
PspFI CCCAGC 1 cut(s) 1193
PspGI CCWGG 2 cut(s) 733, 841
PspN4I GGNNCC 3 cut(s) 685, 876, 1048
PstNI CAGNNNCTG 2 cut(s) 26, 1264
PsuI RGATCY 8 cut(s) 23, 38, 53, 874, 1046, 1260, 1268, 1398
PsyI GACNNNGTC 1 cut(s) 425
PvuII CAGCTG 4 cut(s) 523, 989, 1193, 1342
RsaI GTAC 1 cut(s) 554
RsaNI GTAC 1 cut(s) 553
RseI CAYNNNNRTG 2 cut(s) 1031, 1382
SaqAI TTAA 5 cut(s) 282, 390, 1013, 1037, 1365
SatI GCNGC 6 cut(s) 136, 324, 449, 892, 1151, 1370
SchI GAGTC 3 cut(s) 217, 880, 1232
ScrFI CCNGG 5 cut(s) 642, 643, 735, 843, 1162
SduI GDGCHC 1 cut(s) 779
SfaNI GCATC 3 cut(s) 370, 484, 1360
SfcI CTRYAG 1 cut(s) 1056
SmaI CCCGGG 1 cut(s) 643
SmiMI CAYNNNNRTG 2 cut(s) 1031, 1382
SmlI CTYRAG 3 cut(s) 769, 956, 1364
SmoI CTYRAG 3 cut(s) 769, 956, 1364
Sse9I AATT 6 cut(s) 501, 716, 764, 899, 1407, 1444
SsiI CCGC 3 cut(s) 10, 129, 891
SspI AATATT 1 cut(s) 1042
StyD4I CCNGG 5 cut(s) 640, 641, 733, 841, 1160
StyI CCWWGG 3 cut(s) 354, 870, 1050
TaaI ACNGT 3 cut(s) 336, 484, 831
TaiI ACGT 2 cut(s) 118, 622
TaqI TCGA 5 cut(s) 444, 537, 1146, 1206, 1212
TasI AATT 6 cut(s) 501, 716, 764, 899, 1407, 1444
TatI WGTACW 1 cut(s) 552
TauI GCSGC 1 cut(s) 894
TfiI GAWTC 1 cut(s) 1143
Tru1I TTAA 5 cut(s) 282, 390, 1013, 1037, 1365
Tru9I TTAA 5 cut(s) 282, 390, 1013, 1037, 1365
TscAI CASTG 1 cut(s) 175
TseFI GTSAC 3 cut(s) 111, 254, 1136
TseI GCWGC 5 cut(s) 135, 323, 448, 1150, 1369
Tsp45I GTSAC 3 cut(s) 111, 254, 1136
TspDTI ATGAA 1 cut(s) 476
TspMI CCCGGG 1 cut(s) 641
TspRI CASTG 1 cut(s) 175
Tth111I GACNNNGTC 1 cut(s) 425
Van91I CCANNNNNTGG 1 cut(s) 721
Vha464I CTTAAG 1 cut(s) 1364
VneI GTGCAC 1 cut(s) 775
XapI RAATTY 2 cut(s) 764, 1407
XceI RCATGY 1 cut(s) 233
XcmI CCANNNNNNNNNTGG 1 cut(s) 361
XmaI CCCGGG 1 cut(s) 641
XmnI GAANNNNTTC 2 cut(s) 336, 799
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.