Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002084

Physical Location & Seq

Genomic Coordinates Reverse (-)

290374 .. 294455

Gene Structure 4082 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0003100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGCGATGGTGGTGGTGGTGCTATTCTGGGTTTCTCTGCTTCTTCTTCTCTTGTTTGCTTTAATCAAATTTACCACAGCTGATGGTGATTTCACTTTGATGTCCAAACGCCATGTCAAGCGGGACGAAATTGAAGACAAAGTTGTTTGGATAACTGGTGCTAGCCGTGGAATTGGGGAGGTTCTTGCTAAGCAACTTGCAAATTTGGGAGCTAAGCTCATTATTTCCGCCCGTAATGAAGCTGAATTGGAGCGAGTCAAGAAACAACTTACTGGTAAACATGCACCTGATGGTGTGAAAGTTTTGCCATTGGATTTGGCTTCTGGTGAAGATTGTCTCAAGGATGTTGTAGAGAAAGCAGAGTCATTCTTTCCGAATGCTGGTGTTGATTACATGATCCACAATGCTGCTTTTGAGCGTCCTAAAACTACAGCCTTGGATGTTACTGAGGAGAGTCTAAAGGTAACTTTCAATGTCAATGTTCTTGGGACAATAACGCTGACCCGGCTACTTGCACCTTACATGCTAAGGCGAGGGAAGGGCCATTTTGTTGTGATGAGCAGTGCTGCAGGAAAGACACCTGCACCAGGTCAGGCCATATACTCTGCCTCTAAACATGCCTTAAATGGGTACTTTCACACCTTGCGTTCCGAGCTCTATCAGAAAGGAATTGGGGTGACTATTGTTTGTCCTGGTCCAATAGAAACATCAAATGGTACAGGAGCAGCAAGCTCAGAAAATAAAGCTTCTTCTGTGAAGCGTGTGTCATCAGAAAGGTGTGCAGAGTTGACAATAATTGCTGCCACCCATGGTCTAAAGGAAGTTTGGATATCATATCAGCCTGTCCTGGCTGTAATGTACTTGGTGCAGTACATGCCAACCATTGGTTATTGGCTTATGGACAAGATTGGTGGAAATCGAGTTGAAGCTGCTGCAAGGAAGGGCAACACTTACTCATTGAGCTTACTATTTGGGAAAAAGAAGGCATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0003824 GO:0003924 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005850 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006810 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

GTP_EFTU GTP_EFTU_D2 eIF2_C

Protein Analysis

330

Amino Acids

35.9

Weight (kDa)

9.37

Isoelectric Point (pI)

35.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	47 - 239	2.6e-46	short chain dehydrogenase
KR	PF08659	49 - 217	2.3e-14	KR domain
Polysacc_synt_2	PF02719	49 - 239	8.9e-06	Polysaccharide biosynthesis protein
adh_short_C2	PF13561	53 - 262	6.8e-35	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04170 AT1G04170 AT2G18720 AT2G18720 AT2G18720 AT4G18330
fragaria_vesca	FvH4_4g18420 FvH4_4g18420 FvH4_4g18420
malus_domestica	MD00G1127900.v1.1 MD16G1166900.v1.1
prunus_persica	Prupe.1G133900_v2.0.a1 Prupe.1G133900_v2.0.a1
pyrus_communis	pycom13g14270 pycom16g14090
rosa_chinensis	RchiOBHm_Chr3g0454951 RchiOBHm_Chr4g0422871 RchiOBHm_Chr4g0422891
rosa_laevigata	RLG00000007598 RLG00000025399
rosa_multiflora	Rmu_sc0000744.1_g000135 Rmu_sc0000830.1_g000040 Rmu_sc0001792.1_g000003 Rmu_sc0002169.1_g000007 Rmu_sc0012762.1_g000009
rosa_roxburghii	Rroxscaffold_5G00364730 Rroxscaffold_6G00424660 Rroxscaffold_7G00207260
rosa_rugosa	Rorug03G0003100 Rorug04G0182000 Rorug04G0182500
rosa_samantha	Rh3AG063000 Rh3BG064900 Rh3CG063800 Rh3DG064900 Rh4AG242400 Rh4AG242600 Rh4BG246000 Rh4BG246200 Rh4CG256400
rosa_wichuraiana	Rw0G015780 Rw0G018540 Rw3G004940 Rw4G020880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	589
Acc36I	ACCTGC	1 cut(s)	589
AccB7I	CCANNNNNTGG	1 cut(s)	884
AciI	CCGC	2 cut(s)	121, 228
AclWI	GGATC	1 cut(s)	391
AcsI	RAATTY	2 cut(s)	68, 202
AfaI	GTAC	4 cut(s)	632, 718, 860, 872
AfiI	CCNNNNNNNGG	4 cut(s)	380, 587, 627, 884
AgsI	TTSAA	3 cut(s)	134, 472, 926
AjnI	CCWGG	3 cut(s)	586, 691, 846
AluBI	AGCT	9 cut(s)	80, 212, 217, 242, 655, 732, 746, 929, 963
AluI	AGCT	9 cut(s)	80, 212, 217, 242, 655, 732, 746, 929, 963
Alw21I	GWGCWC	1 cut(s)	657
Alw26I	GTCTC	1 cut(s)	341
AlwI	GGATC	1 cut(s)	391
AoxI	GGCC	2 cut(s)	541, 594
ApeKI	GCWGC	6 cut(s)	407, 566, 725, 800, 929, 932
ApoI	RAATTY	2 cut(s)	68, 202
ArsI	GACNNNNNNTTYG	2 cut(s)	99, 131
AspS9I	GGNCC	2 cut(s)	541, 695
AsuC2I	CCSGG	1 cut(s)	505
AsuHPI	GGTGA	3 cut(s)	98, 338, 688
AsuNHI	GCTAGC	1 cut(s)	161
AvaII	GGWCC	1 cut(s)	695
BanII	GRGCYC	1 cut(s)	657
BbsI	GAAGAC	1 cut(s)	141
Bbv12I	GWGCWC	1 cut(s)	657
BbvI	GCAGC	6 cut(s)	394, 553, 737, 787, 916, 919
BccI	CCATC	2 cut(s)	77, 284
BceAI	ACGGC	1 cut(s)	150
BciT130I	CCWGG	3 cut(s)	588, 693, 848
BcnI	CCSGG	1 cut(s)	505
BcoDI	GTCTC	1 cut(s)	341
BfaI	CTAG	1 cut(s)	162
BfmI	CTRYAG	2 cut(s)	429, 567
BfuAI	ACCTGC	1 cut(s)	589
BisI	GCNGC	6 cut(s)	408, 567, 726, 801, 930, 933
BlpI	GCTNAGC	2 cut(s)	189, 213
BlsI	GCNGC	6 cut(s)	409, 568, 727, 802, 931, 934
Bme1390I	CCNGG	4 cut(s)	505, 588, 693, 848
Bme18I	GGWCC	1 cut(s)	695
BmgT120I	GGNCC	2 cut(s)	541, 695
BmrFI	CCNGG	4 cut(s)	505, 588, 693, 848
BmtI	GCTAGC	1 cut(s)	165
BpiI	GAAGAC	1 cut(s)	141
BplI	GAGNNNNNCTC	2 cut(s)	201, 233
Bpu10I	CCTNAGC	1 cut(s)	527
Bpu1102I	GCTNAGC	2 cut(s)	189, 213
BpuEI	CTTGAG	1 cut(s)	323
BpuMI	CCSGG	1 cut(s)	505
BsaJI	CCNNGG	3 cut(s)	166, 435, 808
Bsc4I	CCNNNNNNNGG	4 cut(s)	380, 587, 627, 884
Bse1I	ACTGG	2 cut(s)	160, 277
BseBI	CCWGG	3 cut(s)	588, 693, 848
BseDI	CCNNGG	3 cut(s)	166, 435, 808
BseGI	GGATG	2 cut(s)	349, 445
BseLI	CCNNNNNNNGG	4 cut(s)	380, 587, 627, 884
BseMII	CTCAG	2 cut(s)	438, 747
BseNI	ACTGG	2 cut(s)	160, 277
BseRI	GAGGAG	1 cut(s)	464
BseXI	GCAGC	6 cut(s)	394, 553, 737, 787, 916, 919
BsgI	GTGCAG	3 cut(s)	567, 801, 887
BshFI	GGCC	2 cut(s)	543, 596
BsiHKAI	GWGCWC	1 cut(s)	657
BsiSI	CCGG	1 cut(s)	505
BslFI	GGGAC	2 cut(s)	137, 502
BslI	CCNNNNNNNGG	4 cut(s)	380, 587, 627, 884
BsmAI	GTCTC	1 cut(s)	341
BsmFI	GGGAC	2 cut(s)	137, 502
BsmI	GAATGC	1 cut(s)	382
BsnI	GGCC	2 cut(s)	543, 596
Bsp1286I	GDGCHC	1 cut(s)	657
Bsp143I	GATC	1 cut(s)	396
Bsp1720I	GCTNAGC	2 cut(s)	189, 213
Bsp19I	CCATGG	1 cut(s)	808
BspACI	CCGC	2 cut(s)	121, 228
BspANI	GGCC	2 cut(s)	543, 596
BspCNI	CTCAG	2 cut(s)	439, 746
BspHI	TCATGA	1 cut(s)	989
BspMAI	CTGCAG	1 cut(s)	571
BspMI	ACCTGC	1 cut(s)	589
BspOI	GCTAGC	1 cut(s)	165
BspPI	GGATC	1 cut(s)	391
BsrI	ACTGG	2 cut(s)	160, 277
BssECI	CCNNGG	3 cut(s)	166, 435, 808
BssMI	GATC	1 cut(s)	396
BssT1I	CCWWGG	2 cut(s)	435, 808
Bst2UI	CCWGG	3 cut(s)	588, 693, 848
BstAPI	GCANNNNNTGC	1 cut(s)	874
BstC8I	GCNNGC	2 cut(s)	163, 730
BstDEI	CTNAG	5 cut(s)	189, 213, 447, 527, 733
BstDSI	CCRYGG	2 cut(s)	166, 808
BstENI	CCTNNNNNAGG	1 cut(s)	585
BstF5I	GGATG	2 cut(s)	349, 445
BstKTI	GATC	1 cut(s)	399
BstMAI	GTCTC	1 cut(s)	341
BstMBI	GATC	1 cut(s)	396
BstMWI	GCNNNNNNNGC	3 cut(s)	505, 652, 874
BstNI	CCWGG	3 cut(s)	588, 693, 848
BstNSI	RCATGY	4 cut(s)	284, 526, 620, 877
BstSCI	CCNGG	4 cut(s)	503, 586, 691, 846
BstSFI	CTRYAG	2 cut(s)	429, 567
BstV1I	GCAGC	6 cut(s)	394, 553, 737, 787, 916, 919
BstV2I	GAAGAC	1 cut(s)	141
BsuRI	GGCC	2 cut(s)	543, 596
BtgI	CCRYGG	2 cut(s)	166, 808
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	2 cut(s)	349, 445
BtsI	GCAGTG	1 cut(s)	568
BtsIMutI	CAGTG	1 cut(s)	568
BveI	ACCTGC	1 cut(s)	589
Cac8I	GCNNGC	2 cut(s)	163, 730
CciI	TCATGA	1 cut(s)	989
Cfr13I	GGNCC	2 cut(s)	541, 695
CseI	GACGC	1 cut(s)	407
CsiI	ACCWGGT	1 cut(s)	586
Csp6I	GTAC	4 cut(s)	631, 717, 859, 871
CspCI	CAANNNNNGTGG	2 cut(s)	892, 927
CviAII	CATG	8 cut(s)	113, 281, 394, 523, 617, 809, 874, 990
CviQI	GTAC	4 cut(s)	631, 717, 859, 871
DdeI	CTNAG	5 cut(s)	189, 213, 447, 527, 733
DpnI	GATC	1 cut(s)	398
DpnII	GATC	1 cut(s)	396
EciI	GGCGGA	1 cut(s)	217
Ecl136II	GAGCTC	1 cut(s)	655
Eco130I	CCWWGG	2 cut(s)	435, 808
Eco24I	GRGCYC	1 cut(s)	657
Eco32I	GATATC	1 cut(s)	831
Eco47I	GGWCC	1 cut(s)	695
Eco53kI	GAGCTC	1 cut(s)	655
EcoICRI	GAGCTC	1 cut(s)	655
EcoNI	CCTNNNNNAGG	1 cut(s)	585
EcoRII	CCWGG	3 cut(s)	586, 691, 846
EcoRV	GATATC	1 cut(s)	831
EcoT14I	CCWWGG	2 cut(s)	435, 808
EcoT38I	GRGCYC	1 cut(s)	657
ErhI	CCWWGG	2 cut(s)	435, 808
FaeI	CATG	8 cut(s)	116, 284, 397, 526, 620, 812, 877, 993
FaqI	GGGAC	2 cut(s)	137, 502
FatI	CATG	8 cut(s)	112, 280, 393, 522, 616, 808, 873, 989
FauI	CCCGC	1 cut(s)	114
Fnu4HI	GCNGC	6 cut(s)	408, 567, 726, 801, 930, 933
FokI	GGATG	2 cut(s)	356, 452
FriOI	GRGCYC	1 cut(s)	657
Fsp4HI	GCNGC	6 cut(s)	408, 567, 726, 801, 930, 933
FspBI	CTAG	1 cut(s)	162
GluI	GCNGC	6 cut(s)	408, 567, 726, 801, 930, 933
HaeIII	GGCC	2 cut(s)	543, 596
HapII	CCGG	1 cut(s)	505
HgaI	GACGC	1 cut(s)	407
Hin1II	CATG	8 cut(s)	116, 284, 397, 526, 620, 812, 877, 993
HincII	GTYRAC	1 cut(s)	789
HindII	GTYRAC	1 cut(s)	789
HindIII	AAGCTT	1 cut(s)	744
HinfI	GANTC	3 cut(s)	255, 362, 454
HpaII	CCGG	1 cut(s)	505
HphI	GGTGA	3 cut(s)	98, 338, 688
Hpy166II	GTNNAC	2 cut(s)	278, 789
Hpy188I	TCNGA	5 cut(s)	375, 652, 663, 736, 772
Hpy188III	TCNNGA	2 cut(s)	259, 990
Hpy8I	GTNNAC	2 cut(s)	278, 789
HpyAV	CCTTC	3 cut(s)	532, 934, 976
HpyCH4V	TGCA	8 cut(s)	200, 284, 515, 569, 584, 782, 868, 935
HpyF10VI	GCNNNNNNNGC	3 cut(s)	505, 652, 874
HpyF3I	CTNAG	5 cut(s)	189, 213, 447, 527, 733
Hsp92II	CATG	8 cut(s)	116, 284, 397, 526, 620, 812, 877, 993
Kzo9I	GATC	1 cut(s)	396
LmnI	GCTCC	3 cut(s)	209, 250, 722
Lsp1109I	GCAGC	6 cut(s)	394, 553, 737, 787, 916, 919
MabI	ACCWGGT	1 cut(s)	586
MaeI	CTAG	1 cut(s)	162
MaeIII	GTNAC	3 cut(s)	442, 463, 676
MalI	GATC	1 cut(s)	398
MboI	GATC	1 cut(s)	396
MboII	GAAGA	5 cut(s)	35, 38, 146, 341, 741
MhlI	GDGCHC	1 cut(s)	657
MluCI	AATT	7 cut(s)	68, 129, 171, 202, 245, 669, 795
MlyI	GAGTC	3 cut(s)	264, 371, 463
MnlI	CCTC	4 cut(s)	172, 442, 527, 619
MseI	TTAA	2 cut(s)	62, 623
MslI	CAYNNNNRTG	1 cut(s)	98
MspA1I	CMGCKG	1 cut(s)	80
MspI	CCGG	1 cut(s)	505
MspR9I	CCNGG	4 cut(s)	505, 588, 693, 848
Mva1269I	GAATGC	1 cut(s)	382
MvaI	CCWGG	3 cut(s)	588, 693, 848
MwoI	GCNNNNNNNGC	3 cut(s)	505, 652, 874
NciI	CCSGG	1 cut(s)	505
NcoI	CCATGG	1 cut(s)	808
NdeII	GATC	1 cut(s)	396
NheI	GCTAGC	1 cut(s)	161
NlaIII	CATG	8 cut(s)	116, 284, 397, 526, 620, 812, 877, 993
NmuCI	GTSAC	1 cut(s)	676
NspI	RCATGY	4 cut(s)	284, 526, 620, 877
PagI	TCATGA	1 cut(s)	989
PaqCI	CACCTGC	1 cut(s)	589
PctI	GAATGC	1 cut(s)	382
PflMI	CCANNNNNTGG	1 cut(s)	884
PkrI	GCNGC	6 cut(s)	409, 568, 727, 802, 931, 934
PleI	GAGTC	3 cut(s)	263, 370, 462
PpsI	GAGTC	3 cut(s)	263, 370, 462
Psp124BI	GAGCTC	1 cut(s)	657
Psp6I	CCWGG	3 cut(s)	586, 691, 846
PspGI	CCWGG	3 cut(s)	586, 691, 846
PspPI	GGNCC	2 cut(s)	541, 695
PstI	CTGCAG	1 cut(s)	571
PvuII	CAGCTG	1 cut(s)	80
RsaI	GTAC	4 cut(s)	632, 718, 860, 872
RsaNI	GTAC	4 cut(s)	631, 717, 859, 871
RseI	CAYNNNNRTG	1 cut(s)	98
SacI	GAGCTC	1 cut(s)	657
SaqAI	TTAA	2 cut(s)	62, 623
SatI	GCNGC	6 cut(s)	408, 567, 726, 801, 930, 933
Sau3AI	GATC	1 cut(s)	396
Sau96I	GGNCC	2 cut(s)	541, 695
SchI	GAGTC	3 cut(s)	264, 371, 463
ScrFI	CCNGG	4 cut(s)	505, 588, 693, 848
SduI	GDGCHC	1 cut(s)	657
SexAI	ACCWGGT	1 cut(s)	586
SfcI	CTRYAG	2 cut(s)	429, 567
SinI	GGWCC	1 cut(s)	695
SmiMI	CAYNNNNRTG	1 cut(s)	98
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
Sse9I	AATT	7 cut(s)	68, 129, 171, 202, 245, 669, 795
SsiI	CCGC	2 cut(s)	121, 228
SspMI	CTAG	1 cut(s)	162
SstI	GAGCTC	1 cut(s)	657
StyD4I	CCNGG	4 cut(s)	503, 586, 691, 846
StyI	CCWWGG	2 cut(s)	435, 808
TaqI	TCGA	1 cut(s)	919
TasI	AATT	7 cut(s)	68, 129, 171, 202, 245, 669, 795
TatI	WGTACW	2 cut(s)	858, 870
Tru1I	TTAA	2 cut(s)	62, 623
Tru9I	TTAA	2 cut(s)	62, 623
TscAI	CASTG	1 cut(s)	568
TseFI	GTSAC	1 cut(s)	676
TseI	GCWGC	6 cut(s)	407, 566, 725, 800, 929, 932
Tsp45I	GTSAC	1 cut(s)	676
TspDTI	ATGAA	1 cut(s)	252
TspRI	CASTG	1 cut(s)	568
Van91I	CCANNNNNTGG	1 cut(s)	884
VpaK11BI	GGWCC	1 cut(s)	695
XagI	CCTNNNNNAGG	1 cut(s)	585
XapI	RAATTY	2 cut(s)	68, 202
XceI	RCATGY	4 cut(s)	284, 526, 620, 877
XspI	CTAG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.