Rw3G004940

Eukaryotic translation initiation factor 2 subunit

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Reverse (-)
4161069 .. 4162449
1381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G004940.1

Sequence Viewer

Length: 1275 bp
ATGAAGGGTTTGGTGGCTCAGGATCTGAGCAAACTGGATCTAACTCAGTTAGATCCACTCTCGCCGGAAGTTATATCTCGTCAGGCCACGATCAACATTGGCACAATAGGTCACGTGGCTCATGGTAAGTCAACGGTGGTCAAAGCAATTTCGGGGGTTCAGACAGTTCGTTTCAAACAGGAGCTGGAGCGCAACATAACTATAAAAACAGGATATGCTAATGCCAAAATTTACAATGGAAAGGAAGACAATCCTCTCTGTGAACGGTGTGGGAGTCAGATGAGACTGGAGAGACATGTGTCCTTTGTAGATTGCCCCGGTCACGAAGCACTAATGGCTACTATGCTTAATGGTGTGTCCATTATGGATGGAGCGTTACTTGTTGTAGCTGCTGACGAACAGTTTCCCCAAGAACAAACCAAGGAGCATCTGGAAGCTGTTGAAATCATGTCTCTTAAACACAACATTGTGCTTCAAAACAAAGTTGACCTTGTCCGAGAGAAGGCAATCGAGCAGCGAGAGGAGATGAAGGAGTGGTTTCGTGGCACGGTAGCTGAAGATGCAACAATTGTGCCTATTGTTGCTCAGCTGAAGTATAACATCGATGTAGTGAACGAGTACATTGTCAAGAACATCCCCATTCCGAAAAGGGACTTTGCTTCGCCTCCTTATATGAGGATCATACGTTCCTTTGATGTCAACAAACCCGGGTTTGGGAGTGATGACATAAAAGGTGCTGTGGCTGGTGGAACCCTTCTTAGGGGTTCGTCCTGGTCTTGTTGTCAAAGACGAGAGGGGGAATTCTTGAGGTGCACGCCATTGTATTCCAGAATAGTTTCCTTGTTTGCTGAGGAAAACGAGTTACAGTTTGCTGTGCCAGGAGGTCTGATTGGGGTTGGCACAACCTTGGATCCTGCTTTGACTCGCGGCGATAAATTGGTGGGTCAAGTAGTTGGAGATGTTGGCTCACTCCCTGATGTGTATGCACAACTTGAGAAGAAAGGGCTATCAAAGTTAAGCAAGAATGACATTGTGATGTTAAATATTGGATCCAAGGCTACAGAAGCAAAGGTTGTTGCTGTGAGGGAAAGTAAGGTGAAATTGCGACTCATCACATCTCCAGTTTGCACGAACATAGGTGACATAGTGGCGATCAGTCAAAGAATCGAGCAGCATAAGCCCCGGTATCTTATCGCTTGGGGCGAGATTACAGCTGGGAGAACACTCGATATCGAACCTTGCCCTACTTTAGTAGCTGACTCCACAAATCAGTAA

Protein Analysis

424

Amino Acids

46.59

Weight (kDa)

6.68

Isoelectric Point (pI)

40.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GTP_EFTU PF00009 30 - 213 2.5e-25 Elongation factor Tu GTP binding domain
eIF2_C PF09173 327 - 403 4.3e-14 Initiation factor eIF2 gamma, C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 927
AciI CCGC 1 cut(s) 927
AclWI GGATC 8 cut(s) 30, 45, 47, 686, 905, 918, 1044, 1057
AcsI RAATTY 2 cut(s) 228, 800
AcuI CTGAAG 2 cut(s) 576, 611
AcvI CACGTG 1 cut(s) 115
AfaI GTAC 1 cut(s) 620
AfiI CCNNNNNNNGG 5 cut(s) 502, 713, 714, 759, 760
AflIII ACRYGT 1 cut(s) 295
AgsI TTSAA 3 cut(s) 175, 443, 476
AjnI CCWGG 2 cut(s) 770, 877
AloI GAACNNNNNNTCC 2 cut(s) 670, 702
AluBI AGCT 7 cut(s) 184, 389, 437, 554, 589, 1214, 1256
AluI AGCT 7 cut(s) 184, 389, 437, 554, 589, 1214, 1256
Alw21I GWGCWC 1 cut(s) 815
Alw26I GTCTC 3 cut(s) 277, 286, 456
Alw44I GTGCAC 1 cut(s) 811
AlwI GGATC 8 cut(s) 30, 45, 47, 686, 905, 918, 1044, 1057
AlwNI CAGNNNCTG 2 cut(s) 25, 184
Ama87I CYCGRG 1 cut(s) 707
AoxI GGCC 1 cut(s) 84
ApaLI GTGCAC 1 cut(s) 811
ApeKI GCWGC 3 cut(s) 389, 514, 1171
ApoI RAATTY 2 cut(s) 228, 800
Asp700I GAANNNNTTC 2 cut(s) 402, 835
AspLEI GCGC 1 cut(s) 192
AsuC2I CCSGG 4 cut(s) 318, 708, 709, 1183
AsuHPI GGTGA 2 cut(s) 1108, 1151
AvaI CYCGRG 1 cut(s) 707
BaeGI GKGCMC 1 cut(s) 815
BamHI GGATCC 2 cut(s) 910, 1049
BbrPI CACGTG 1 cut(s) 115
BbsI GAAGAC 1 cut(s) 252
Bbv12I GWGCWC 1 cut(s) 815
BbvCI CCTCAGC 1 cut(s) 849
BbvI GCAGC 3 cut(s) 376, 526, 1183
BccI CCATC 1 cut(s) 362
BciT130I CCWGG 2 cut(s) 772, 879
BcnI CCSGG 4 cut(s) 318, 708, 709, 1183
BcoDI GTCTC 3 cut(s) 277, 286, 456
BfmI CTRYAG 1 cut(s) 1059
BisI GCNGC 4 cut(s) 390, 515, 928, 1172
BlpI GCTNAGC 1 cut(s) 585
BlsI GCNGC 4 cut(s) 391, 516, 929, 1173
Bme1390I CCNGG 6 cut(s) 318, 708, 709, 772, 879, 1183
BmeT110I CYCGRG 1 cut(s) 707
BmiI GGNNCC 3 cut(s) 751, 912, 1051
BmrFI CCNGG 6 cut(s) 318, 708, 709, 772, 879, 1183
BmsI GCATC 2 cut(s) 436, 550
BoxI GACNNNNGTC 1 cut(s) 298
BpiI GAAGAC 1 cut(s) 252
BpmI CTGGAG 3 cut(s) 206, 308, 1104
Bpu10I CCTNAGC 2 cut(s) 18, 849
Bpu1102I GCTNAGC 1 cut(s) 585
BpuEI CTTGAG 2 cut(s) 826, 1013
BpuMI CCSGG 4 cut(s) 318, 708, 709, 1183
Bsa29I ATCGAT 1 cut(s) 603
BsaAI YACGTR 1 cut(s) 115
BsaJI CCNNGG 6 cut(s) 316, 420, 707, 906, 1053, 1181
Bsc4I CCNNNNNNNGG 5 cut(s) 502, 713, 714, 759, 760
Bse1I ACTGG 3 cut(s) 39, 291, 1121
BseBI CCWGG 2 cut(s) 772, 879
BseCI ATCGAT 1 cut(s) 603
BseDI CCNNGG 6 cut(s) 316, 420, 707, 906, 1053, 1181
BseGI GGATG 2 cut(s) 373, 633
BseLI CCNNNNNNNGG 5 cut(s) 502, 713, 714, 759, 760
BseMII CTCAG 5 cut(s) 17, 32, 59, 599, 840
BseNI ACTGG 3 cut(s) 39, 291, 1121
BseRI GAGGAG 1 cut(s) 536
BseSI GKGCMC 1 cut(s) 815
BseXI GCAGC 3 cut(s) 376, 526, 1183
BseYI CCCAGC 1 cut(s) 1214
Bsh1236I CGCG 1 cut(s) 927
BshFI GGCC 1 cut(s) 86
BshVI ATCGAT 1 cut(s) 603
BsiHKAI GWGCWC 1 cut(s) 815
BsiHKCI CYCGRG 1 cut(s) 707
BsiSI CCGG 4 cut(s) 65, 318, 708, 1183
BslFI GGGAC 1 cut(s) 665
BslI CCNNNNNNNGG 5 cut(s) 502, 713, 714, 759, 760
BsmAI GTCTC 3 cut(s) 277, 286, 456
BsmFI GGGAC 1 cut(s) 665
BsnI GGCC 1 cut(s) 86
BsoBI CYCGRG 1 cut(s) 707
Bsp1286I GDGCHC 1 cut(s) 815
Bsp143I GATC 8 cut(s) 22, 37, 52, 90, 678, 910, 1049, 1152
Bsp1720I GCTNAGC 1 cut(s) 585
BspACI CCGC 1 cut(s) 927
BspANI GGCC 1 cut(s) 86
BspCNI CTCAG 5 cut(s) 18, 31, 58, 598, 841
BspDI ATCGAT 1 cut(s) 603
BspFNI CGCG 1 cut(s) 927
BspLI GGNNCC 3 cut(s) 751, 912, 1051
BspPI GGATC 8 cut(s) 30, 45, 47, 686, 905, 918, 1044, 1057
BsrI ACTGG 3 cut(s) 39, 291, 1121
BssECI CCNNGG 6 cut(s) 316, 420, 707, 906, 1053, 1181
BssMI GATC 8 cut(s) 22, 37, 52, 90, 678, 910, 1049, 1152
BssT1I CCWWGG 3 cut(s) 420, 906, 1053
Bst2UI CCWGG 2 cut(s) 772, 879
Bst4CI ACNGT 6 cut(s) 136, 166, 267, 402, 550, 867
BstBAI YACGTR 1 cut(s) 115
BstC8I GCNNGC 1 cut(s) 815
BstDEI CTNAG 6 cut(s) 18, 26, 45, 585, 758, 849
BstF5I GGATG 2 cut(s) 373, 633
BstFNI CGCG 1 cut(s) 927
BstHHI GCGC 1 cut(s) 192
BstKTI GATC 8 cut(s) 25, 40, 55, 93, 681, 913, 1052, 1155
BstMAI GTCTC 3 cut(s) 277, 286, 456
BstMBI GATC 8 cut(s) 22, 37, 52, 90, 678, 910, 1049, 1152
BstMWI GCNNNNNNNGC 4 cut(s) 335, 560, 1064, 1177
BstNI CCWGG 2 cut(s) 772, 879
BstNSI RCATGY 1 cut(s) 299
BstPAI GACNNNNGTC 1 cut(s) 298
BstSCI CCNGG 6 cut(s) 316, 706, 707, 770, 877, 1181
BstSFI CTRYAG 1 cut(s) 1059
BstSLI GKGCMC 1 cut(s) 815
BstUI CGCG 1 cut(s) 927
BstV1I GCAGC 3 cut(s) 376, 526, 1183
BstV2I GAAGAC 1 cut(s) 252
BstX2I RGATCY 5 cut(s) 22, 37, 52, 910, 1049
BstYI RGATCY 5 cut(s) 22, 37, 52, 910, 1049
Bsu15I ATCGAT 1 cut(s) 603
BsuRI GGCC 1 cut(s) 86
BsuTUI ATCGAT 1 cut(s) 603
BtsCI GGATG 2 cut(s) 373, 633
Cac8I GCNNGC 1 cut(s) 815
CaiI CAGNNNCTG 2 cut(s) 25, 184
CfoI GCGC 1 cut(s) 192
Cfr9I CCCGGG 1 cut(s) 707
ClaI ATCGAT 1 cut(s) 603
Csp6I GTAC 1 cut(s) 619
CviAII CATG 3 cut(s) 122, 296, 448
CviQI GTAC 1 cut(s) 619
DdeI CTNAG 6 cut(s) 18, 26, 45, 585, 758, 849
DpnI GATC 8 cut(s) 24, 39, 54, 92, 680, 912, 1051, 1154
DpnII GATC 8 cut(s) 22, 37, 52, 90, 678, 910, 1049, 1152
Eco130I CCWWGG 3 cut(s) 420, 906, 1053
Eco32I GATATC 1 cut(s) 1231
Eco57I CTGAAG 2 cut(s) 576, 611
Eco72I CACGTG 1 cut(s) 115
Eco88I CYCGRG 1 cut(s) 707
EcoRI GAATTC 1 cut(s) 800
EcoRII CCWGG 2 cut(s) 770, 877
EcoRV GATATC 1 cut(s) 1231
EcoT14I CCWWGG 3 cut(s) 420, 906, 1053
ErhI CCWWGG 3 cut(s) 420, 906, 1053
FaeI CATG 3 cut(s) 125, 299, 451
FalI AAGNNNNNCTT 2 cut(s) 474, 506
FaqI GGGAC 1 cut(s) 665
FatI CATG 3 cut(s) 121, 295, 447
Fnu4HI GCNGC 4 cut(s) 390, 515, 928, 1172
FokI GGATG 2 cut(s) 380, 620
Fsp4HI GCNGC 4 cut(s) 390, 515, 928, 1172
GlaI GCGC 1 cut(s) 191
GluI GCNGC 4 cut(s) 390, 515, 928, 1172
GsaI CCCAGC 1 cut(s) 1218
GsuI CTGGAG 3 cut(s) 206, 308, 1104
HaeIII GGCC 1 cut(s) 86
HapII CCGG 4 cut(s) 65, 318, 708, 1183
HhaI GCGC 1 cut(s) 192
Hin1II CATG 3 cut(s) 125, 299, 451
Hin6I GCGC 1 cut(s) 190
HinP1I GCGC 1 cut(s) 190
HincII GTYRAC 3 cut(s) 132, 487, 700
HindII GTYRAC 3 cut(s) 132, 487, 700
HinfI GANTC 5 cut(s) 274, 922, 1107, 1164, 1259
HpaII CCGG 4 cut(s) 65, 318, 708, 1183
HphI GGTGA 2 cut(s) 1108, 1151
Hpy166II GTNNAC 6 cut(s) 132, 263, 487, 613, 700, 813
Hpy188I TCNGA 6 cut(s) 27, 162, 279, 497, 645, 888
Hpy188III TCNNGA 6 cut(s) 20, 323, 431, 628, 805, 828
Hpy8I GTNNAC 6 cut(s) 132, 263, 487, 613, 700, 813
HpyAV CCTTC 3 cut(s) 496, 523, 764
HpyCH4III ACNGT 6 cut(s) 136, 166, 267, 402, 550, 867
HpyCH4IV ACGT 2 cut(s) 114, 685
HpyCH4V TGCA 4 cut(s) 563, 813, 986, 1128
HpyF10VI GCNNNNNNNGC 4 cut(s) 335, 560, 1064, 1177
HpyF3I CTNAG 6 cut(s) 18, 26, 45, 585, 758, 849
HpySE526I ACGT 2 cut(s) 114, 685
Hsp92II CATG 3 cut(s) 125, 299, 451
HspAI GCGC 1 cut(s) 190
Kzo9I GATC 8 cut(s) 22, 37, 52, 90, 678, 910, 1049, 1152
LmnI GCTCC 4 cut(s) 181, 187, 371, 424
Lsp1109I GCAGC 3 cut(s) 376, 526, 1183
LweI GCATC 2 cut(s) 436, 550
MaeII ACGT 2 cut(s) 114, 685
MaeIII GTNAC 5 cut(s) 110, 320, 375, 861, 1139
MalI GATC 8 cut(s) 24, 39, 54, 92, 680, 912, 1051, 1154
MboI GATC 8 cut(s) 22, 37, 52, 90, 678, 910, 1049, 1152
MboII GAAGA 3 cut(s) 257, 569, 1009
MfeI CAATTG 1 cut(s) 567
MflI RGATCY 5 cut(s) 22, 37, 52, 910, 1049
MhlI GDGCHC 1 cut(s) 815
MluCI AATT 6 cut(s) 147, 228, 567, 800, 935, 1100
MlyI GAGTC 4 cut(s) 283, 916, 1101, 1253
MmeI TCCRAC 1 cut(s) 934
MnlI CCTC 9 cut(s) 264, 514, 669, 675, 787, 801, 844, 875, 1077
MroXI GAANNNNTTC 2 cut(s) 402, 835
MseI TTAA 4 cut(s) 348, 456, 1016, 1040
MslI CAYNNNNRTG 1 cut(s) 1034
MspA1I CMGCKG 2 cut(s) 589, 1214
MspI CCGG 4 cut(s) 65, 318, 708, 1183
MspR9I CCNGG 6 cut(s) 318, 708, 709, 772, 879, 1183
MunI CAATTG 1 cut(s) 567
MvaI CCWGG 2 cut(s) 772, 879
MvnI CGCG 1 cut(s) 927
MwoI GCNNNNNNNGC 4 cut(s) 335, 560, 1064, 1177
NciI CCSGG 4 cut(s) 318, 708, 709, 1183
NdeII GATC 8 cut(s) 22, 37, 52, 90, 678, 910, 1049, 1152
NlaIII CATG 3 cut(s) 125, 299, 451
NlaIV GGNNCC 3 cut(s) 751, 912, 1051
NmuCI GTSAC 3 cut(s) 110, 320, 1139
NspI RCATGY 1 cut(s) 299
PciI ACATGT 1 cut(s) 295
PcsI WCGNNNNNNNCGW 1 cut(s) 1200
PdmI GAANNNNTTC 2 cut(s) 402, 835
PfeI GAWTC 1 cut(s) 1164
PflFI GACNNNGTC 1 cut(s) 491
PkrI GCNGC 4 cut(s) 391, 516, 929, 1173
PleI GAGTC 4 cut(s) 282, 916, 1101, 1253
PmaCI CACGTG 1 cut(s) 115
PmlI CACGTG 1 cut(s) 115
PpsI GAGTC 4 cut(s) 282, 916, 1101, 1253
Ppu21I YACGTR 1 cut(s) 115
PscI ACATGT 1 cut(s) 295
PshAI GACNNNNGTC 1 cut(s) 298
Psp6I CCWGG 2 cut(s) 770, 877
PspCI CACGTG 1 cut(s) 115
PspFI CCCAGC 1 cut(s) 1214
PspGI CCWGG 2 cut(s) 770, 877
PspN4I GGNNCC 3 cut(s) 751, 912, 1051
PstNI CAGNNNCTG 2 cut(s) 25, 184
PsuI RGATCY 5 cut(s) 22, 37, 52, 910, 1049
PsyI GACNNNGTC 1 cut(s) 491
PvuII CAGCTG 2 cut(s) 589, 1214
RsaI GTAC 1 cut(s) 620
RsaNI GTAC 1 cut(s) 619
RseI CAYNNNNRTG 1 cut(s) 1034
SaqAI TTAA 4 cut(s) 348, 456, 1016, 1040
SatI GCNGC 4 cut(s) 390, 515, 928, 1172
Sau3AI GATC 8 cut(s) 22, 37, 52, 90, 678, 910, 1049, 1152
SchI GAGTC 4 cut(s) 283, 916, 1101, 1253
ScrFI CCNGG 6 cut(s) 318, 708, 709, 772, 879, 1183
SduI GDGCHC 1 cut(s) 815
SfaNI GCATC 2 cut(s) 436, 550
SfcI CTRYAG 1 cut(s) 1059
SmaI CCCGGG 1 cut(s) 709
SmiMI CAYNNNNRTG 1 cut(s) 1034
SmlI CTYRAG 2 cut(s) 805, 992
SmoI CTYRAG 2 cut(s) 805, 992
Sse9I AATT 6 cut(s) 147, 228, 567, 800, 935, 1100
SsiI CCGC 1 cut(s) 927
SspI AATATT 1 cut(s) 1045
StyD4I CCNGG 6 cut(s) 316, 706, 707, 770, 877, 1181
StyI CCWWGG 3 cut(s) 420, 906, 1053
TaaI ACNGT 6 cut(s) 136, 166, 267, 402, 550, 867
TaiI ACGT 2 cut(s) 117, 688
TaqI TCGA 5 cut(s) 510, 603, 1167, 1227, 1233
TasI AATT 6 cut(s) 147, 228, 567, 800, 935, 1100
TatI WGTACW 1 cut(s) 618
TauI GCSGC 1 cut(s) 930
TfiI GAWTC 1 cut(s) 1164
Tru1I TTAA 4 cut(s) 348, 456, 1016, 1040
Tru9I TTAA 4 cut(s) 348, 456, 1016, 1040
TseFI GTSAC 3 cut(s) 110, 320, 1139
TseI GCWGC 3 cut(s) 389, 514, 1171
Tsp45I GTSAC 3 cut(s) 110, 320, 1139
TspDTI ATGAA 2 cut(s) 17, 542
TspMI CCCGGG 1 cut(s) 707
Tth111I GACNNNGTC 1 cut(s) 491
VneI GTGCAC 1 cut(s) 811
XapI RAATTY 2 cut(s) 228, 800
XceI RCATGY 1 cut(s) 299
XcmI CCANNNNNNNNNTGG 1 cut(s) 427
XmaI CCCGGG 1 cut(s) 707
XmnI GAANNNNTTC 2 cut(s) 402, 835
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.