Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002084

Physical Location & Seq

Genomic Coordinates Reverse (-)

31850417 .. 31851241

Gene Structure 825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0182000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGCCATGAGAATAGCCAGTGACTATTGGGAAGTGGTGGGCGACGCTCTCTGTGACGTATGTGTCAACCCACATTTTGTGGACGTCGTTTCTGAACCAGAAAACGAGGTGCTATGTACCACCAAGTTCTTGATCGATTTCCAGGCGGTGATCAGACGCGTCTCCTCCTGCGATACCGAACGACTCTCAGACTTGGACGACGTCATCAGCCGCACGAGTGTGACTGAGGCCTCAATGGAACTCGACTCTTCTAACTCAGACGAAGCAGCTGCAGTCTCCGACGCGCTCCGAGAGCTGAAGGTACCACTGAATGAACGTGTCCCCATGGTGCAGAGAATAATGTACAAAGCCTGCGAGATAGAAAATGAGAATAGGTGTTATGGAAGGAGAAAGATTGCTCATATGTTGGTGAAGATCGATCTTATTGTTGTTGATGATGGTGGCGACGACACAGATGAGGATGGTATTGTGGAGTGCTGCCTTGAAGGATCACATCCTTACCCGGATCGTTCCATGGTAGAGCAGCTGCAGAAAACTGGGGTTTGCCCTATGTGTGATGATGATAGGAAAATGTGCTTGACAAAGATGGAGAACGAGGGGATTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

GTP_EFTU GTP_EFTU_D2 eIF2_C

Protein Analysis

202

Amino Acids

22.69

Weight (kDa)

4.36

Isoelectric Point (pI)

43.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04170 AT1G04170 AT2G18720 AT2G18720 AT2G18720 AT4G18330
fragaria_vesca	FvH4_4g18420 FvH4_4g18420 FvH4_4g18420
malus_domestica	MD00G1127900.v1.1 MD16G1166900.v1.1
prunus_persica	Prupe.1G133900_v2.0.a1 Prupe.1G133900_v2.0.a1
pyrus_communis	pycom13g14270 pycom16g14090
rosa_chinensis	RchiOBHm_Chr3g0454951 RchiOBHm_Chr4g0422871 RchiOBHm_Chr4g0422891
rosa_laevigata	RLG00000007598 RLG00000025399
rosa_multiflora	Rmu_sc0000744.1_g000135 Rmu_sc0000830.1_g000040 Rmu_sc0001792.1_g000003 Rmu_sc0002169.1_g000007 Rmu_sc0012762.1_g000009
rosa_roxburghii	Rroxscaffold_5G00364730 Rroxscaffold_6G00424660 Rroxscaffold_7G00207260
rosa_rugosa	Rorug03G0003100 Rorug04G0182000 Rorug04G0182500
rosa_samantha	Rh3AG063000 Rh3BG064900 Rh3CG063800 Rh3DG064900 Rh4AG242400 Rh4AG242600 Rh4BG246000 Rh4BG246200 Rh4CG256400
rosa_wichuraiana	Rw0G015780 Rw0G018540 Rw3G004940 Rw4G020880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	62
AatII	GACGTC	2 cut(s)	87, 204
Acc65I	GGTACC	1 cut(s)	301
AccB1I	GGYRCC	1 cut(s)	301
AccII	CGCG	2 cut(s)	159, 284
AciI	CCGC	2 cut(s)	146, 211
AclWI	GGATC	2 cut(s)	496, 513
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	317
AcyI	GRCGYC	2 cut(s)	84, 201
AfaI	GTAC	3 cut(s)	118, 303, 344
AflIII	ACRYGT	2 cut(s)	157, 316
AgsI	TTSAA	1 cut(s)	485
AjnI	CCWGG	1 cut(s)	141
AleI	CACNNNNGTG	1 cut(s)	218
AluBI	AGCT	3 cut(s)	269, 295, 526
AluI	AGCT	3 cut(s)	269, 295, 526
Alw26I	GTCTC	2 cut(s)	166, 280
AlwI	GGATC	2 cut(s)	496, 513
AoxI	GGCC	2 cut(s)	3, 228
ApeKI	GCWGC	5 cut(s)	266, 269, 477, 523, 526
Asp718I	GGTACC	1 cut(s)	301
AspLEI	GCGC	1 cut(s)	286
AsuC2I	CCSGG	1 cut(s)	503
AsuHPI	GGTGA	2 cut(s)	160, 421
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	301
BauI	CACGAG	1 cut(s)	214
BbvI	GCAGC	5 cut(s)	256, 278, 464, 513, 535
BccI	CCATC	3 cut(s)	431, 455, 580
BcgI	CGANNNNNNTGC	2 cut(s)	251, 285
BciT130I	CCWGG	1 cut(s)	143
BclI	TGATCA	1 cut(s)	150
BcnI	CCSGG	1 cut(s)	503
BcoDI	GTCTC	2 cut(s)	166, 280
BfmI	CTRYAG	2 cut(s)	270, 527
BisI	GCNGC	6 cut(s)	211, 267, 270, 478, 524, 527
BlsI	GCNGC	6 cut(s)	212, 268, 271, 479, 525, 528
Bme1390I	CCNGG	2 cut(s)	143, 503
BmiI	GGNNCC	1 cut(s)	303
BmrFI	CCNGG	2 cut(s)	143, 503
BmrI	ACTGGG	1 cut(s)	546
BmuI	ACTGGG	1 cut(s)	546
BpuMI	CCSGG	1 cut(s)	503
Bsa29I	ATCGAT	2 cut(s)	135, 417
BsaHI	GRCGYC	2 cut(s)	84, 201
BsaJI	CCNNGG	2 cut(s)	324, 513
Bse1I	ACTGG	2 cut(s)	18, 541
BseBI	CCWGG	1 cut(s)	143
BseCI	ATCGAT	2 cut(s)	135, 417
BseDI	CCNNGG	2 cut(s)	324, 513
BseGI	GGATG	2 cut(s)	466, 493
BseMII	CTCAG	3 cut(s)	201, 216, 270
BseNI	ACTGG	2 cut(s)	18, 541
BseRI	GAGGAG	1 cut(s)	154
BseXI	GCAGC	5 cut(s)	256, 278, 464, 513, 535
BsgI	GTGCAG	1 cut(s)	350
Bsh1236I	CGCG	2 cut(s)	159, 284
BshFI	GGCC	2 cut(s)	5, 230
BshNI	GGYRCC	1 cut(s)	301
BshVI	ATCGAT	2 cut(s)	135, 417
BsiSI	CCGG	1 cut(s)	503
BslFI	GGGAC	1 cut(s)	305
BsmAI	GTCTC	2 cut(s)	166, 280
BsmBI	CGTCTC	1 cut(s)	166
BsmFI	GGGAC	1 cut(s)	305
BsnI	GGCC	2 cut(s)	5, 230
Bsp1407I	TGTACA	1 cut(s)	342
Bsp143I	GATC	6 cut(s)	132, 150, 414, 418, 488, 505
Bsp19I	CCATGG	2 cut(s)	324, 513
BspACI	CCGC	2 cut(s)	146, 211
BspANI	GGCC	2 cut(s)	5, 230
BspCNI	CTCAG	3 cut(s)	200, 217, 269
BspDI	ATCGAT	2 cut(s)	135, 417
BspFNI	CGCG	2 cut(s)	159, 284
BspLI	GGNNCC	1 cut(s)	303
BspMAI	CTGCAG	2 cut(s)	274, 531
BspPI	GGATC	2 cut(s)	496, 513
BspT107I	GGYRCC	1 cut(s)	301
BsrGI	TGTACA	1 cut(s)	342
BsrI	ACTGG	2 cut(s)	18, 541
BssECI	CCNNGG	2 cut(s)	324, 513
BssMI	GATC	6 cut(s)	132, 150, 414, 418, 488, 505
BssNI	GRCGYC	2 cut(s)	84, 201
BssSI	CACGAG	1 cut(s)	214
BssT1I	CCWWGG	2 cut(s)	324, 513
Bst2BI	CACGAG	1 cut(s)	214
Bst2UI	CCWGG	1 cut(s)	143
Bst6I	CTCTTC	1 cut(s)	253
BstACI	GRCGYC	2 cut(s)	84, 201
BstAUI	TGTACA	1 cut(s)	342
BstC8I	GCNNGC	1 cut(s)	352
BstDEI	CTNAG	3 cut(s)	187, 225, 256
BstDSI	CCRYGG	2 cut(s)	324, 513
BstF5I	GGATG	2 cut(s)	466, 493
BstFNI	CGCG	2 cut(s)	159, 284
BstHHI	GCGC	1 cut(s)	286
BstKTI	GATC	6 cut(s)	135, 153, 417, 421, 491, 508
BstMAI	GTCTC	2 cut(s)	166, 280
BstMBI	GATC	6 cut(s)	132, 150, 414, 418, 488, 505
BstMWI	GCNNNNNNNGC	1 cut(s)	292
BstNI	CCWGG	1 cut(s)	143
BstSCI	CCNGG	2 cut(s)	141, 501
BstSFI	CTRYAG	2 cut(s)	270, 527
BstUI	CGCG	2 cut(s)	159, 284
BstV1I	GCAGC	5 cut(s)	256, 278, 464, 513, 535
Bsu15I	ATCGAT	2 cut(s)	135, 417
BsuRI	GGCC	2 cut(s)	5, 230
BsuTUI	ATCGAT	2 cut(s)	135, 417
BtgI	CCRYGG	2 cut(s)	324, 513
BtsCI	GGATG	2 cut(s)	466, 493
BtsIMutI	CAGTG	2 cut(s)	25, 305
Cac8I	GCNNGC	1 cut(s)	352
CfoI	GCGC	1 cut(s)	286
ClaI	ATCGAT	2 cut(s)	135, 417
CseI	GACGC	4 cut(s)	53, 148, 165, 290
Csp6I	GTAC	3 cut(s)	117, 302, 343
CviAII	CATG	3 cut(s)	7, 325, 514
CviJI	RGCY	8 cut(s)	5, 17, 210, 230, 269, 295, 350, 526
CviKI_1	RGCY	8 cut(s)	5, 17, 210, 230, 269, 295, 350, 526
CviQI	GTAC	3 cut(s)	117, 302, 343
DdeI	CTNAG	3 cut(s)	187, 225, 256
DpnI	GATC	6 cut(s)	134, 152, 416, 420, 490, 507
DpnII	GATC	6 cut(s)	132, 150, 414, 418, 488, 505
DrdI	GACNNNNNNGTC	1 cut(s)	62
DseDI	GACNNNNNNGTC	1 cut(s)	62
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	253
EarI	CTCTTC	1 cut(s)	253
Eco130I	CCWWGG	2 cut(s)	324, 513
Eco147I	AGGCCT	1 cut(s)	230
Eco57I	CTGAAG	1 cut(s)	317
EcoRII	CCWGG	1 cut(s)	141
EcoT14I	CCWWGG	2 cut(s)	324, 513
ErhI	CCWWGG	2 cut(s)	324, 513
Esp3I	CGTCTC	1 cut(s)	166
FaeI	CATG	3 cut(s)	10, 328, 517
FaqI	GGGAC	1 cut(s)	305
FatI	CATG	3 cut(s)	6, 324, 513
FauNDI	CATATG	1 cut(s)	402
FbaI	TGATCA	1 cut(s)	150
Fnu4HI	GCNGC	6 cut(s)	211, 267, 270, 478, 524, 527
FokI	GGATG	2 cut(s)	473, 480
Fsp4HI	GCNGC	6 cut(s)	211, 267, 270, 478, 524, 527
GlaI	GCGC	1 cut(s)	285
GluI	GCNGC	6 cut(s)	211, 267, 270, 478, 524, 527
HaeIII	GGCC	2 cut(s)	5, 230
HapII	CCGG	1 cut(s)	503
HgaI	GACGC	4 cut(s)	53, 148, 165, 290
HhaI	GCGC	1 cut(s)	286
Hin1I	GRCGYC	2 cut(s)	84, 201
Hin1II	CATG	3 cut(s)	10, 328, 517
Hin6I	GCGC	1 cut(s)	284
HinP1I	GCGC	1 cut(s)	284
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HinfI	GANTC	3 cut(s)	183, 245, 601
HpaII	CCGG	1 cut(s)	503
HphI	GGTGA	2 cut(s)	160, 421
Hpy166II	GTNNAC	2 cut(s)	67, 82
Hpy188I	TCNGA	6 cut(s)	94, 155, 190, 259, 280, 290
Hpy188III	TCNNGA	1 cut(s)	130
Hpy8I	GTNNAC	2 cut(s)	67, 82
Hpy99I	CGWCG	5 cut(s)	47, 89, 203, 284, 449
HpyAV	CCTTC	3 cut(s)	292, 378, 479
HpyCH4IV	ACGT	4 cut(s)	57, 84, 201, 316
HpyCH4V	TGCA	3 cut(s)	272, 331, 529
HpyF10VI	GCNNNNNNNGC	1 cut(s)	292
HpyF3I	CTNAG	3 cut(s)	187, 225, 256
HpySE526I	ACGT	4 cut(s)	57, 84, 201, 316
Hsp92I	GRCGYC	2 cut(s)	84, 201
Hsp92II	CATG	3 cut(s)	10, 328, 517
HspAI	GCGC	1 cut(s)	284
KpnI	GGTACC	1 cut(s)	305
Ksp22I	TGATCA	1 cut(s)	150
Kzo9I	GATC	6 cut(s)	132, 150, 414, 418, 488, 505
LmnI	GCTCC	1 cut(s)	291
LpnPI	CCDG	8 cut(s)	31, 111, 128, 155, 181, 364, 516, 522
Lsp1109I	GCAGC	5 cut(s)	256, 278, 464, 513, 535
MaeII	ACGT	4 cut(s)	57, 84, 201, 316
MaeIII	GTNAC	3 cut(s)	20, 53, 220
MalI	GATC	6 cut(s)	134, 152, 416, 420, 490, 507
MboI	GATC	6 cut(s)	132, 150, 414, 418, 488, 505
MboII	GAAGA	2 cut(s)	240, 424
MlsI	TGGCCA	1 cut(s)	5
MluI	ACGCGT	1 cut(s)	157
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	177, 239
MmeI	TCCRAC	1 cut(s)	303
MnlI	CCTC	6 cut(s)	100, 175, 220, 241, 451, 589
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	218
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	269, 526
MspI	CCGG	1 cut(s)	503
MspR9I	CCNGG	2 cut(s)	143, 503
MvaI	CCWGG	1 cut(s)	143
MvnI	CGCG	2 cut(s)	159, 284
MwoI	GCNNNNNNNGC	1 cut(s)	292
NciI	CCSGG	1 cut(s)	503
NcoI	CCATGG	2 cut(s)	324, 513
NdeI	CATATG	1 cut(s)	402
NdeII	GATC	6 cut(s)	132, 150, 414, 418, 488, 505
NlaIII	CATG	3 cut(s)	10, 328, 517
NlaIV	GGNNCC	1 cut(s)	303
NmuCI	GTSAC	3 cut(s)	20, 53, 220
OliI	CACNNNNGTG	1 cut(s)	218
PceI	AGGCCT	1 cut(s)	230
PfeI	GAWTC	1 cut(s)	601
PflFI	GACNNNGTC	1 cut(s)	200
PkrI	GCNGC	6 cut(s)	212, 268, 271, 479, 525, 528
PleI	GAGTC	2 cut(s)	177, 239
PpsI	GAGTC	2 cut(s)	177, 239
Psp6I	CCWGG	1 cut(s)	141
PspGI	CCWGG	1 cut(s)	141
PspN4I	GGNNCC	1 cut(s)	303
PstI	CTGCAG	2 cut(s)	274, 531
PsyI	GACNNNGTC	1 cut(s)	200
PvuII	CAGCTG	2 cut(s)	269, 526
RsaI	GTAC	3 cut(s)	118, 303, 344
RsaNI	GTAC	3 cut(s)	117, 302, 343
RseI	CAYNNNNRTG	1 cut(s)	218
SatI	GCNGC	6 cut(s)	211, 267, 270, 478, 524, 527
Sau3AI	GATC	6 cut(s)	132, 150, 414, 418, 488, 505
SchI	GAGTC	2 cut(s)	177, 239
ScrFI	CCNGG	2 cut(s)	143, 503
SfcI	CTRYAG	2 cut(s)	270, 527
SmiMI	CAYNNNNRTG	1 cut(s)	218
SseBI	AGGCCT	1 cut(s)	230
SsiI	CCGC	2 cut(s)	146, 211
StuI	AGGCCT	1 cut(s)	230
StyD4I	CCNGG	2 cut(s)	141, 501
StyI	CCWWGG	2 cut(s)	324, 513
TaiI	ACGT	4 cut(s)	60, 87, 204, 319
TaqI	TCGA	3 cut(s)	135, 243, 417
TatI	WGTACW	1 cut(s)	342
TauI	GCSGC	1 cut(s)	213
TfiI	GAWTC	1 cut(s)	601
TscAI	CASTG	2 cut(s)	25, 312
TseFI	GTSAC	3 cut(s)	20, 53, 220
TseI	GCWGC	5 cut(s)	266, 269, 477, 523, 526
Tsp45I	GTSAC	3 cut(s)	20, 53, 220
TspDTI	ATGAA	1 cut(s)	327
TspRI	CASTG	2 cut(s)	25, 312
Tth111I	GACNNNGTC	1 cut(s)	200
ZraI	GACGTC	2 cut(s)	85, 202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.