Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000744.1

Orthogroup ID

OG0002084

Physical Location & Seq

Genomic Coordinates Forward (+)

500031 .. 501917

Gene Structure 1887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000744.1_g000135.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

atggctactatgcttaatggggctgcaattatggacggggcattgcttctgattgctgcaaatgaaagctgtccccagcctcaaacgtctgagcatcttgctgctgtggaaattatgcgtcttcagcatatcattatccttcaaaataaggttgatcttattcaggagaatgtggccatcaaccaacatgaagcaatccggaagtttattgagggtactgtagctgatggtgcaccagttgtgccaatttctgctcagttgaaatataatattgctgtggtgtgcgagtacatcgtgaagaagatcccaattccagaaaggaactttatctctcctccaaatatgattgttgttcgttctttcgatgttaacaaacctggatttgaggttgatgagatacgaggcggtgtagctggtggaagtattctcaggggtgttttgaaagtgaatcagtttattgaggttcgtcctggtattgttgtgaaagatgagagtggaaacatcaagtgcacacctatatattcgagaatagtctcgctgtatgctgagcagaacgagttgcaattcgcggttccaggtggtctcataggggttggaacaaccatggatcccaccttgacacttgcggatagattattggggcaagttcttggtgaagtaggctcacttcctgaagtatttgttgagcttgaggtaagggcagtaaactttttcctgttgagaaggcttctgggggtgcggacaaagggttctgaaaagcaggggaaggtctccaagcttgccaaggctgtgatacttatgttaaatattggttctatgtcgactggtgctagggtaatagctgtgagaaatgatttagcgaagcttcagttgacttctcctgtgtgcacaagcgaaggagagaaaattgcgctcagtatgcgagttgagaagcactggcgcctgatcggttggggccagatcctagctggaaccacacttgaagtcccaccctgccctatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

GTP_EFTU GTP_EFTU_D2 eIF2_C

Protein Analysis

334

Amino Acids

36.2

Weight (kDa)

8.23

Isoelectric Point (pI)

42.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04170 AT1G04170 AT2G18720 AT2G18720 AT2G18720 AT4G18330
fragaria_vesca	FvH4_4g18420 FvH4_4g18420 FvH4_4g18420
malus_domestica	MD00G1127900.v1.1 MD16G1166900.v1.1
prunus_persica	Prupe.1G133900_v2.0.a1 Prupe.1G133900_v2.0.a1
pyrus_communis	pycom13g14270 pycom16g14090
rosa_chinensis	RchiOBHm_Chr3g0454951 RchiOBHm_Chr4g0422871 RchiOBHm_Chr4g0422891
rosa_laevigata	RLG00000007598 RLG00000025399
rosa_multiflora	Rmu_sc0000744.1_g000135 Rmu_sc0000830.1_g000040 Rmu_sc0001792.1_g000003 Rmu_sc0002169.1_g000007 Rmu_sc0012762.1_g000009
rosa_roxburghii	Rroxscaffold_5G00364730 Rroxscaffold_6G00424660 Rroxscaffold_7G00207260
rosa_rugosa	Rorug03G0003100 Rorug04G0182000 Rorug04G0182500
rosa_samantha	Rh3AG063000 Rh3BG064900 Rh3CG063800 Rh3DG064900 Rh4AG242400 Rh4AG242600 Rh4BG246000 Rh4BG246200 Rh4CG256400
rosa_wichuraiana	Rw0G015780 Rw0G018540 Rw3G004940 Rw4G020880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	939
AccI	GTMKAC	1 cut(s)	821
AccII	CGCG	1 cut(s)	569
AccIII	TCCGGA	1 cut(s)	198
AciI	CCGC	4 cut(s)	405, 569, 626, 739
AclWI	GGATC	4 cut(s)	298, 602, 615, 955
AcoI	YGGCCR	1 cut(s)	174
AcuI	CTGAAG	3 cut(s)	107, 693, 851
AcyI	GRCGYC	1 cut(s)	940
AfaI	GTAC	2 cut(s)	217, 290
AgsI	TTSAA	4 cut(s)	143, 262, 442, 983
AjnI	CCWGG	3 cut(s)	376, 469, 574
AloI	GAACNNNNNNTCC	2 cut(s)	733, 765
AluBI	AGCT	8 cut(s)	69, 224, 413, 688, 778, 842, 865, 968
AluI	AGCT	8 cut(s)	69, 224, 413, 688, 778, 842, 865, 968
Alw21I	GWGCWC	3 cut(s)	235, 512, 890
Alw26I	GTCTC	3 cut(s)	538, 587, 775
Alw44I	GTGCAC	3 cut(s)	231, 508, 886
AlwI	GGATC	4 cut(s)	298, 602, 615, 955
Aor13HI	TCCGGA	1 cut(s)	198
AoxI	GGCC	2 cut(s)	174, 955
ApaLI	GTGCAC	3 cut(s)	231, 508, 886
ApeKI	GCWGC	3 cut(s)	23, 56, 101
AspLEI	GCGC	2 cut(s)	913, 942
AspS9I	GGNCC	1 cut(s)	955
AsuHPI	GGTGA	1 cut(s)	665
BaeGI	GKGCMC	3 cut(s)	235, 512, 890
BaeI	ACNNNNGTAYC	2 cut(s)	785, 818
BalI	TGGCCA	1 cut(s)	176
BamHI	GGATCC	1 cut(s)	607
BanI	GGYRCC	1 cut(s)	939
BarI	GAAGNNNNNNTAC	2 cut(s)	651, 683
BbsI	GAAGAC	1 cut(s)	113
Bbv12I	GWGCWC	3 cut(s)	235, 512, 890
BbvI	GCAGC	3 cut(s)	10, 43, 88
BccI	CCATC	2 cut(s)	185, 221
BciT130I	CCWGG	3 cut(s)	378, 471, 576
BcoDI	GTCTC	3 cut(s)	538, 587, 775
BfaI	CTAG	2 cut(s)	831, 965
BfmI	CTRYAG	1 cut(s)	219
BfoI	RGCGCY	1 cut(s)	943
BisI	GCNGC	3 cut(s)	24, 57, 102
BlpI	GCTNAGC	1 cut(s)	546
BlsI	GCNGC	3 cut(s)	25, 58, 103
Bme1390I	CCNGG	3 cut(s)	378, 471, 576
BmgT120I	GGNCC	1 cut(s)	955
BmiI	GGNNCC	5 cut(s)	573, 609, 941, 956, 973
BmrFI	CCNGG	3 cut(s)	378, 471, 576
BmsI	GCATC	1 cut(s)	103
BpiI	GAAGAC	1 cut(s)	113
Bpu1102I	GCTNAGC	1 cut(s)	546
BpuEI	CTTGAG	1 cut(s)	710
BsaHI	GRCGYC	1 cut(s)	940
BsaI	GGTCTC	2 cut(s)	587, 775
BsaJI	CCNNGG	2 cut(s)	603, 783
BsaWI	WCCGGW	1 cut(s)	198
Bse1I	ACTGG	3 cut(s)	236, 829, 941
Bse3DI	GCAATG	1 cut(s)	41
BseAI	TCCGGA	1 cut(s)	198
BseBI	CCWGG	3 cut(s)	378, 471, 576
BseDI	CCNNGG	2 cut(s)	603, 783
BseMI	GCAATG	1 cut(s)	41
BseMII	CTCAG	5 cut(s)	81, 269, 442, 537, 928
BseNI	ACTGG	3 cut(s)	236, 829, 941
BseRI	GAGGAG	1 cut(s)	324
BseSI	GKGCMC	3 cut(s)	235, 512, 890
BseXI	GCAGC	3 cut(s)	10, 43, 88
BseYI	CCCAGC	1 cut(s)	75
Bsh1236I	CGCG	1 cut(s)	569
BshFI	GGCC	2 cut(s)	176, 957
BshNI	GGYRCC	1 cut(s)	939
BsiHKAI	GWGCWC	3 cut(s)	235, 512, 890
BsiSI	CCGG	1 cut(s)	199
BslFI	GGGAC	2 cut(s)	57, 971
BsmAI	GTCTC	3 cut(s)	538, 587, 775
BsmFI	GGGAC	2 cut(s)	57, 971
BsnI	GGCC	2 cut(s)	176, 957
Bso31I	GGTCTC	2 cut(s)	587, 775
Bsp1286I	GDGCHC	3 cut(s)	235, 512, 890
Bsp13I	TCCGGA	1 cut(s)	198
Bsp143I	GATC	5 cut(s)	154, 303, 607, 945, 960
Bsp1720I	GCTNAGC	1 cut(s)	546
Bsp19I	CCATGG	1 cut(s)	603
BspACI	CCGC	4 cut(s)	405, 569, 626, 739
BspANI	GGCC	2 cut(s)	176, 957
BspCNI	CTCAG	5 cut(s)	82, 268, 441, 538, 927
BspEI	TCCGGA	1 cut(s)	198
BspFNI	CGCG	1 cut(s)	569
BspLI	GGNNCC	5 cut(s)	573, 609, 941, 956, 973
BspPI	GGATC	4 cut(s)	298, 602, 615, 955
BspT107I	GGYRCC	1 cut(s)	939
BspTNI	GGTCTC	2 cut(s)	587, 775
BsrDI	GCAATG	1 cut(s)	41
BsrI	ACTGG	3 cut(s)	236, 829, 941
BssECI	CCNNGG	2 cut(s)	603, 783
BssMI	GATC	5 cut(s)	154, 303, 607, 945, 960
BssNI	GRCGYC	1 cut(s)	940
BssT1I	CCWWGG	2 cut(s)	603, 783
Bst2UI	CCWGG	3 cut(s)	378, 471, 576
Bst4CI	ACNGT	1 cut(s)	220
BstACI	GRCGYC	1 cut(s)	940
BstC8I	GCNNGC	1 cut(s)	780
BstDEI	CTNAG	5 cut(s)	90, 255, 428, 546, 914
BstDSI	CCRYGG	1 cut(s)	603
BstFNI	CGCG	1 cut(s)	569
BstH2I	RGCGCY	1 cut(s)	943
BstHHI	GCGC	2 cut(s)	913, 942
BstKTI	GATC	5 cut(s)	157, 306, 610, 948, 963
BstMAI	GTCTC	3 cut(s)	538, 587, 775
BstMBI	GATC	5 cut(s)	154, 303, 607, 945, 960
BstMWI	GCNNNNNNNGC	3 cut(s)	124, 230, 919
BstNI	CCWGG	3 cut(s)	378, 471, 576
BstSCI	CCNGG	3 cut(s)	376, 469, 574
BstSFI	CTRYAG	1 cut(s)	219
BstSLI	GKGCMC	3 cut(s)	235, 512, 890
BstUI	CGCG	1 cut(s)	569
BstV1I	GCAGC	3 cut(s)	10, 43, 88
BstV2I	GAAGAC	1 cut(s)	113
BstX2I	RGATCY	3 cut(s)	303, 607, 960
BstYI	RGATCY	3 cut(s)	303, 607, 960
BsuRI	GGCC	2 cut(s)	176, 957
BtgI	CCRYGG	1 cut(s)	603
BtsIMutI	CAGTG	1 cut(s)	934
Cac8I	GCNNGC	1 cut(s)	780
CfoI	GCGC	2 cut(s)	913, 942
Cfr13I	GGNCC	1 cut(s)	955
CseI	GACGC	1 cut(s)	107
Csp6I	GTAC	2 cut(s)	216, 289
CviAII	CATG	2 cut(s)	188, 604
CviQI	GTAC	2 cut(s)	216, 289
DdeI	CTNAG	5 cut(s)	90, 255, 428, 546, 914
DinI	GGCGCC	1 cut(s)	941
DpnI	GATC	5 cut(s)	156, 305, 609, 947, 962
DpnII	GATC	5 cut(s)	154, 303, 607, 945, 960
EaeI	YGGCCR	1 cut(s)	174
Eco130I	CCWWGG	2 cut(s)	603, 783
Eco31I	GGTCTC	2 cut(s)	587, 775
Eco57I	CTGAAG	3 cut(s)	107, 693, 851
EcoRII	CCWGG	3 cut(s)	376, 469, 574
EcoT14I	CCWWGG	2 cut(s)	603, 783
EgeI	GGCGCC	1 cut(s)	941
EheI	GGCGCC	1 cut(s)	941
ErhI	CCWWGG	2 cut(s)	603, 783
FaeI	CATG	2 cut(s)	191, 607
FaqI	GGGAC	2 cut(s)	57, 971
FatI	CATG	2 cut(s)	187, 603
FblI	GTMKAC	1 cut(s)	821
Fnu4HI	GCNGC	3 cut(s)	24, 57, 102
Fsp4HI	GCNGC	3 cut(s)	24, 57, 102
FspBI	CTAG	2 cut(s)	831, 965
GlaI	GCGC	2 cut(s)	912, 941
GluI	GCNGC	3 cut(s)	24, 57, 102
GsaI	CCCAGC	1 cut(s)	79
HaeII	RGCGCY	1 cut(s)	943
HaeIII	GGCC	2 cut(s)	176, 957
HapII	CCGG	1 cut(s)	199
HgaI	GACGC	1 cut(s)	107
HhaI	GCGC	2 cut(s)	913, 942
Hin1I	GRCGYC	1 cut(s)	940
Hin1II	CATG	2 cut(s)	191, 607
Hin6I	GCGC	2 cut(s)	911, 940
HinP1I	GCGC	2 cut(s)	911, 940
HincII	GTYRAC	3 cut(s)	370, 822, 873
HindII	GTYRAC	3 cut(s)	370, 822, 873
HindIII	AAGCTT	2 cut(s)	776, 863
HinfI	GANTC	1 cut(s)	448
HpaI	GTTAAC	1 cut(s)	370
HpaII	CCGG	1 cut(s)	199
HphI	GGTGA	1 cut(s)	665
Hpy166II	GTNNAC	7 cut(s)	233, 370, 510, 706, 822, 873, 888
Hpy188I	TCNGA	3 cut(s)	51, 91, 754
Hpy188III	TCNNGA	6 cut(s)	164, 199, 295, 314, 525, 671
Hpy8I	GTNNAC	7 cut(s)	233, 370, 510, 706, 822, 873, 888
HpyAV	CCTTC	4 cut(s)	149, 717, 760, 890
HpyCH4III	ACNGT	1 cut(s)	220
HpyCH4IV	ACGT	1 cut(s)	86
HpyCH4V	TGCA	6 cut(s)	26, 59, 233, 510, 562, 888
HpyF10VI	GCNNNNNNNGC	3 cut(s)	124, 230, 919
HpyF3I	CTNAG	5 cut(s)	90, 255, 428, 546, 914
HpySE526I	ACGT	1 cut(s)	86
Hsp92I	GRCGYC	1 cut(s)	940
Hsp92II	CATG	2 cut(s)	191, 607
HspAI	GCGC	2 cut(s)	911, 940
KasI	GGCGCC	1 cut(s)	939
Kpn2I	TCCGGA	1 cut(s)	198
KspAI	GTTAAC	1 cut(s)	370
Kzo9I	GATC	5 cut(s)	154, 303, 607, 945, 960
Lsp1109I	GCAGC	3 cut(s)	10, 43, 88
LweI	GCATC	1 cut(s)	103
MaeI	CTAG	2 cut(s)	831, 965
MaeII	ACGT	1 cut(s)	86
MalI	GATC	5 cut(s)	156, 305, 609, 947, 962
MboI	GATC	5 cut(s)	154, 303, 607, 945, 960
MboII	GAAGA	3 cut(s)	113, 310, 313
MflI	RGATCY	3 cut(s)	303, 607, 960
MhlI	GDGCHC	3 cut(s)	235, 512, 890
MlsI	TGGCCA	1 cut(s)	176
MluCI	AATT	6 cut(s)	27, 111, 246, 309, 563, 906
MluNI	TGGCCA	1 cut(s)	176
Mly113I	GGCGCC	1 cut(s)	940
MmeI	TCCRAC	1 cut(s)	574
MnlI	CCTC	7 cut(s)	90, 205, 345, 379, 395, 454, 685
Mox20I	TGGCCA	1 cut(s)	176
MroI	TCCGGA	1 cut(s)	198
MscI	TGGCCA	1 cut(s)	176
MseI	TTAA	3 cut(s)	15, 369, 803
Msp20I	TGGCCA	1 cut(s)	176
MspI	CCGG	1 cut(s)	199
MspR9I	CCNGG	3 cut(s)	378, 471, 576
MvaI	CCWGG	3 cut(s)	378, 471, 576
MvnI	CGCG	1 cut(s)	569
MwoI	GCNNNNNNNGC	3 cut(s)	124, 230, 919
NarI	GGCGCC	1 cut(s)	940
NcoI	CCATGG	1 cut(s)	603
NdeII	GATC	5 cut(s)	154, 303, 607, 945, 960
NlaIII	CATG	2 cut(s)	191, 607
NlaIV	GGNNCC	5 cut(s)	573, 609, 941, 956, 973
PfeI	GAWTC	1 cut(s)	448
PkrI	GCNGC	3 cut(s)	25, 58, 103
PluTI	GGCGCC	1 cut(s)	943
Psp6I	CCWGG	3 cut(s)	376, 469, 574
PspFI	CCCAGC	1 cut(s)	75
PspGI	CCWGG	3 cut(s)	376, 469, 574
PspN4I	GGNNCC	5 cut(s)	573, 609, 941, 956, 973
PspPI	GGNCC	1 cut(s)	955
PsuI	RGATCY	3 cut(s)	303, 607, 960
RsaI	GTAC	2 cut(s)	217, 290
RsaNI	GTAC	2 cut(s)	216, 289
SalI	GTCGAC	1 cut(s)	820
SaqAI	TTAA	3 cut(s)	15, 369, 803
SatI	GCNGC	3 cut(s)	24, 57, 102
Sau3AI	GATC	5 cut(s)	154, 303, 607, 945, 960
Sau96I	GGNCC	1 cut(s)	955
ScrFI	CCNGG	3 cut(s)	378, 471, 576
SduI	GDGCHC	3 cut(s)	235, 512, 890
SfaNI	GCATC	1 cut(s)	103
SfcI	CTRYAG	1 cut(s)	219
SfoI	GGCGCC	1 cut(s)	941
SmlI	CTYRAG	1 cut(s)	689
SmoI	CTYRAG	1 cut(s)	689
Sse9I	AATT	6 cut(s)	27, 111, 246, 309, 563, 906
SsiI	CCGC	4 cut(s)	405, 569, 626, 739
SspDI	GGCGCC	1 cut(s)	939
SspI	AATATT	2 cut(s)	271, 808
SspMI	CTAG	2 cut(s)	831, 965
StyD4I	CCNGG	3 cut(s)	376, 469, 574
StyI	CCWWGG	2 cut(s)	603, 783
TaaI	ACNGT	1 cut(s)	220
TaiI	ACGT	1 cut(s)	89
TaqI	TCGA	3 cut(s)	363, 524, 821
TasI	AATT	6 cut(s)	27, 111, 246, 309, 563, 906
TatI	WGTACW	1 cut(s)	288
TfiI	GAWTC	1 cut(s)	448
Tru1I	TTAA	3 cut(s)	15, 369, 803
Tru9I	TTAA	3 cut(s)	15, 369, 803
TscAI	CASTG	1 cut(s)	941
TseI	GCWGC	3 cut(s)	23, 56, 101
TspDTI	ATGAA	2 cut(s)	78, 204
TspRI	CASTG	1 cut(s)	941
VneI	GTGCAC	3 cut(s)	231, 508, 886
XcmI	CCANNNNNNNNNTGG	1 cut(s)	965
XmiI	GTMKAC	1 cut(s)	821
XspI	CTAG	2 cut(s)	831, 965

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.