RchiOBHm_Chr4g0422891

Eukaryotic translation initiation factor 2 subunit

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
48471807 .. 48481753
9947 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39233

Sequence Viewer

Length: 1239 bp
ATGGATTGGGGTACTGTACGTTTTAAAAATGAGCTGGAGCGTAACATTACTATCAAGCTCGGATACGCAAATGCAAAAATCTACAAATGTGAAGATGAGAAGTGCCCACGACCATCATGCTACAAGGCATATGGAAGAGGAAAAGAAGATGCTCCCCTATGTGATGTTGCTGGATTTGAGAACTGCAGGATGAAGTTGTTGCGACATGTATCATTTGTAGATTGCCCGGGCCACGATATTCTCATGGCTACTATGCTTAATGGGGCTGCAATTATGGACGAGGCATTGCTTCTGATTGCTGCAAATGAAAGCTGTCCCCAGCCTCAAACGTCTGAGCATCTTGCTGCTGTGGAAATTATGCGTCTTCAGCATACCATTATCCTTCAAAATAAGGTTGATCTTATTCAGGAGAATGTGGCCATCAACCAACATGAAGCAATCCGGAAGTTTATTGAGGGTACTGTAGCTGATGGTGCACCAGTTGTGCCAATTTCTGCTCAGTTGAAATATAATATTGCTGTGGTGTGCGAGTACATCGTGAAGAAGATCCCAATTCCAGAAAGGAACTTTATCTCTCCTCCAAATATGATTGTTGTTCGTTCTTTCGATGTTAACAAACCTGGATTTGAGGTTGATGAGATACGAGGCGGTGTAGCTGGTGGAAGTATTCTCAGGGGTGTTTTGAAAGTGAATCAGTTTATTGAGGTTCGTCCTGGTATTGTTGTGAAAGATGAGAGTGGAAACATCAAGTGCACGCCTATATATTCGAGAATAGTCTCGCTGTATGCTGAGCAGAACGAGTTGCAATTCGCGGTTCCAGGTGGTCTCATAGGGGTTGGAACAACCATGGATCCCACCTTGACACTTGCGGATAGATTATTGGGGCAAGTTCTTGGTGAAGTAGGCTCACTTCCTGAAGTATTTGTTGAGCTTGAGGTAAACTTTTTCCTGTTGAGAAGGCTTCTGGGGGTCCGGACAAAGGGTTCTGAAAAGCAGGGGAAGGTCTCCAAGCTTGCCAAGGCTGTGATACTTATGTTAAATATTGGTTCTATGTCGACTGGTGCTAGGGTAATAGCTGTGAGAAATGATTTAGCGAAGCTTCAGTTGACTTCTCCTGTGTGCACAAGCGAAGGAGAGAAAATTGCGCTCAGTATGCGAGTTGAGAAGCACTGGCGCCTGATCGGTTGGGGCCAGATCCAAGCTGGAACCACACTTGAAGTCCCACCCTGCCCTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

412

Amino Acids

45.26

Weight (kDa)

7.94

Isoelectric Point (pI)

39.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GTP_EFTU PF00009 8 - 184 2.4e-19 Elongation factor Tu GTP binding domain
GTP_EFTU_D2 PF03144 216 - 286 4.2e-08 Elongation factor Tu domain 2
eIF2_C PF09173 310 - 399 2e-29 Initiation factor eIF2 gamma, C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1173
AccI GTMKAC 1 cut(s) 1055
AccII CGCG 1 cut(s) 812
AccIII TCCGGA 2 cut(s) 441, 972
AciI CCGC 3 cut(s) 648, 812, 869
AclWI GGATC 4 cut(s) 541, 845, 858, 1189
AcoI YGGCCR 1 cut(s) 417
AcuI CTGAAG 3 cut(s) 350, 936, 1085
AcyI GRCGYC 1 cut(s) 1174
AfaI GTAC 4 cut(s) 13, 18, 460, 533
AfiI CCNNNNNNNGG 1 cut(s) 979
AflIII ACRYGT 1 cut(s) 205
AgsI TTSAA 4 cut(s) 386, 505, 685, 1217
AjnI CCWGG 3 cut(s) 619, 712, 817
AloI GAACNNNNNNTCC 2 cut(s) 967, 999
Alw21I GWGCWC 3 cut(s) 478, 755, 1124
Alw26I GTCTC 3 cut(s) 781, 830, 1009
Alw44I GTGCAC 3 cut(s) 474, 751, 1120
AlwI GGATC 4 cut(s) 541, 845, 858, 1189
Ama87I CYCGRG 1 cut(s) 226
Aor13HI TCCGGA 2 cut(s) 441, 972
AoxI GGCC 3 cut(s) 229, 417, 1189
ApaLI GTGCAC 3 cut(s) 474, 751, 1120
ApeKI GCWGC 3 cut(s) 266, 299, 344
AspLEI GCGC 2 cut(s) 1147, 1176
AspS9I GGNCC 3 cut(s) 229, 970, 1189
AsuC2I CCSGG 2 cut(s) 227, 228
AsuHPI GGTGA 1 cut(s) 908
AvaI CYCGRG 1 cut(s) 226
AvaII GGWCC 1 cut(s) 970
BaeGI GKGCMC 4 cut(s) 107, 478, 755, 1124
BaeI ACNNNNGTAYC 2 cut(s) 1019, 1052
BalI TGGCCA 1 cut(s) 419
BamHI GGATCC 1 cut(s) 850
BanI GGYRCC 1 cut(s) 1173
BarI GAAGNNNNNNTAC 2 cut(s) 894, 926
BbsI GAAGAC 1 cut(s) 356
Bbv12I GWGCWC 3 cut(s) 478, 755, 1124
BbvI GCAGC 3 cut(s) 253, 286, 331
BccI CCATC 3 cut(s) 121, 428, 464
BcgI CGANNNNNNTGC 2 cut(s) 99, 133
BciT130I CCWGG 3 cut(s) 621, 714, 819
BciVI GTATCC 1 cut(s) 56
BcnI CCSGG 2 cut(s) 227, 228
BcoDI GTCTC 3 cut(s) 781, 830, 1009
BfaI CTAG 1 cut(s) 1065
BfmI CTRYAG 2 cut(s) 184, 462
BfoI RGCGCY 1 cut(s) 1177
BfuI GTATCC 1 cut(s) 56
BisI GCNGC 3 cut(s) 267, 300, 345
BlpI GCTNAGC 1 cut(s) 789
BlsI GCNGC 3 cut(s) 268, 301, 346
Bme1390I CCNGG 5 cut(s) 227, 228, 621, 714, 819
Bme18I GGWCC 1 cut(s) 970
BmeT110I CYCGRG 1 cut(s) 226
BmgT120I GGNCC 3 cut(s) 229, 970, 1189
BmiI GGNNCC 6 cut(s) 816, 852, 971, 1175, 1190, 1207
BmrFI CCNGG 5 cut(s) 227, 228, 621, 714, 819
BmsI GCATC 2 cut(s) 139, 346
BpiI GAAGAC 1 cut(s) 356
BpmI CTGGAG 1 cut(s) 56
Bpu1102I GCTNAGC 1 cut(s) 789
BpuEI CTTGAG 1 cut(s) 953
BpuMI CCSGG 2 cut(s) 227, 228
BsaHI GRCGYC 1 cut(s) 1174
BsaI GGTCTC 2 cut(s) 830, 1009
BsaJI CCNNGG 3 cut(s) 226, 846, 1017
BsaWI WCCGGW 2 cut(s) 441, 972
Bsc4I CCNNNNNNNGG 1 cut(s) 979
Bse1I ACTGG 3 cut(s) 479, 1063, 1175
Bse3DI GCAATG 1 cut(s) 284
BseAI TCCGGA 2 cut(s) 441, 972
BseBI CCWGG 3 cut(s) 621, 714, 819
BseDI CCNNGG 3 cut(s) 226, 846, 1017
BseGI GGATG 1 cut(s) 195
BseLI CCNNNNNNNGG 1 cut(s) 979
BseMI GCAATG 1 cut(s) 284
BseMII CTCAG 5 cut(s) 324, 512, 685, 780, 1162
BseNI ACTGG 3 cut(s) 479, 1063, 1175
BseRI GAGGAG 1 cut(s) 567
BseSI GKGCMC 4 cut(s) 107, 478, 755, 1124
BseXI GCAGC 3 cut(s) 253, 286, 331
BseYI CCCAGC 1 cut(s) 318
Bsh1236I CGCG 1 cut(s) 812
BshFI GGCC 3 cut(s) 231, 419, 1191
BshNI GGYRCC 1 cut(s) 1173
BsiHKAI GWGCWC 3 cut(s) 478, 755, 1124
BsiHKCI CYCGRG 1 cut(s) 226
BsiSI CCGG 3 cut(s) 227, 442, 973
BslFI GGGAC 2 cut(s) 300, 1205
BslI CCNNNNNNNGG 1 cut(s) 979
BsmAI GTCTC 3 cut(s) 781, 830, 1009
BsmFI GGGAC 2 cut(s) 300, 1205
BsnI GGCC 3 cut(s) 231, 419, 1191
Bso31I GGTCTC 2 cut(s) 830, 1009
BsoBI CYCGRG 1 cut(s) 226
Bsp1286I GDGCHC 4 cut(s) 107, 478, 755, 1124
Bsp13I TCCGGA 2 cut(s) 441, 972
Bsp143I GATC 5 cut(s) 397, 546, 850, 1179, 1194
Bsp1720I GCTNAGC 1 cut(s) 789
Bsp19I CCATGG 1 cut(s) 846
BspACI CCGC 3 cut(s) 648, 812, 869
BspANI GGCC 3 cut(s) 231, 419, 1191
BspCNI CTCAG 5 cut(s) 325, 511, 684, 781, 1161
BspEI TCCGGA 2 cut(s) 441, 972
BspFNI CGCG 1 cut(s) 812
BspLI GGNNCC 6 cut(s) 816, 852, 971, 1175, 1190, 1207
BspMAI CTGCAG 1 cut(s) 188
BspPI GGATC 4 cut(s) 541, 845, 858, 1189
BspT107I GGYRCC 1 cut(s) 1173
BspTNI GGTCTC 2 cut(s) 830, 1009
BsrDI GCAATG 1 cut(s) 284
BsrI ACTGG 3 cut(s) 479, 1063, 1175
BssECI CCNNGG 3 cut(s) 226, 846, 1017
BssMI GATC 5 cut(s) 397, 546, 850, 1179, 1194
BssNI GRCGYC 1 cut(s) 1174
BssT1I CCWWGG 2 cut(s) 846, 1017
Bst2UI CCWGG 3 cut(s) 621, 714, 819
Bst4CI ACNGT 2 cut(s) 16, 463
Bst6I CTCTTC 1 cut(s) 130
BstACI GRCGYC 1 cut(s) 1174
BstC8I GCNNGC 2 cut(s) 755, 1014
BstDEI CTNAG 5 cut(s) 333, 498, 671, 789, 1148
BstDSI CCRYGG 1 cut(s) 846
BstF5I GGATG 1 cut(s) 195
BstFNI CGCG 1 cut(s) 812
BstH2I RGCGCY 1 cut(s) 1177
BstHHI GCGC 2 cut(s) 1147, 1176
BstKTI GATC 5 cut(s) 400, 549, 853, 1182, 1197
BstMAI GTCTC 3 cut(s) 781, 830, 1009
BstMBI GATC 5 cut(s) 397, 546, 850, 1179, 1194
BstMWI GCNNNNNNNGC 3 cut(s) 367, 473, 1153
BstNI CCWGG 3 cut(s) 621, 714, 819
BstNSI RCATGY 1 cut(s) 209
BstSCI CCNGG 5 cut(s) 225, 226, 619, 712, 817
BstSFI CTRYAG 2 cut(s) 184, 462
BstSLI GKGCMC 4 cut(s) 107, 478, 755, 1124
BstUI CGCG 1 cut(s) 812
BstV1I GCAGC 3 cut(s) 253, 286, 331
BstV2I GAAGAC 1 cut(s) 356
BstX2I RGATCY 3 cut(s) 546, 850, 1194
BstYI RGATCY 3 cut(s) 546, 850, 1194
BsuI GTATCC 1 cut(s) 56
BsuRI GGCC 3 cut(s) 231, 419, 1191
BtgI CCRYGG 1 cut(s) 846
BtsCI GGATG 1 cut(s) 195
BtsIMutI CAGTG 1 cut(s) 1168
Cac8I GCNNGC 2 cut(s) 755, 1014
CfoI GCGC 2 cut(s) 1147, 1176
Cfr13I GGNCC 3 cut(s) 229, 970, 1189
Cfr9I CCCGGG 1 cut(s) 226
CseI GACGC 1 cut(s) 350
Csp6I GTAC 4 cut(s) 12, 17, 459, 532
CviAII CATG 5 cut(s) 117, 206, 244, 431, 847
CviQI GTAC 4 cut(s) 12, 17, 459, 532
DdeI CTNAG 5 cut(s) 333, 498, 671, 789, 1148
DinI GGCGCC 1 cut(s) 1175
DpnI GATC 5 cut(s) 399, 548, 852, 1181, 1196
DpnII GATC 5 cut(s) 397, 546, 850, 1179, 1194
DraI TTTAAA 1 cut(s) 25
EaeI YGGCCR 1 cut(s) 417
Eam1104I CTCTTC 1 cut(s) 130
EarI CTCTTC 1 cut(s) 130
Eco130I CCWWGG 2 cut(s) 846, 1017
Eco31I GGTCTC 2 cut(s) 830, 1009
Eco47I GGWCC 1 cut(s) 970
Eco57I CTGAAG 3 cut(s) 350, 936, 1085
Eco88I CYCGRG 1 cut(s) 226
EcoRII CCWGG 3 cut(s) 619, 712, 817
EcoT14I CCWWGG 2 cut(s) 846, 1017
EgeI GGCGCC 1 cut(s) 1175
EheI GGCGCC 1 cut(s) 1175
ErhI CCWWGG 2 cut(s) 846, 1017
FaeI CATG 5 cut(s) 120, 209, 247, 434, 850
FaqI GGGAC 2 cut(s) 300, 1205
FatI CATG 5 cut(s) 116, 205, 243, 430, 846
FauNDI CATATG 1 cut(s) 130
FblI GTMKAC 1 cut(s) 1055
Fnu4HI GCNGC 3 cut(s) 267, 300, 345
FokI GGATG 1 cut(s) 202
Fsp4HI GCNGC 3 cut(s) 267, 300, 345
FspBI CTAG 1 cut(s) 1065
GlaI GCGC 2 cut(s) 1146, 1175
GluI GCNGC 3 cut(s) 267, 300, 345
GsaI CCCAGC 1 cut(s) 322
GsuI CTGGAG 1 cut(s) 56
HaeII RGCGCY 1 cut(s) 1177
HaeIII GGCC 3 cut(s) 231, 419, 1191
HapII CCGG 3 cut(s) 227, 442, 973
HgaI GACGC 1 cut(s) 350
HhaI GCGC 2 cut(s) 1147, 1176
Hin1I GRCGYC 1 cut(s) 1174
Hin1II CATG 5 cut(s) 120, 209, 247, 434, 850
Hin6I GCGC 2 cut(s) 1145, 1174
HinP1I GCGC 2 cut(s) 1145, 1174
HincII GTYRAC 3 cut(s) 613, 1056, 1107
HindII GTYRAC 3 cut(s) 613, 1056, 1107
HindIII AAGCTT 2 cut(s) 1010, 1097
HinfI GANTC 1 cut(s) 691
HpaI GTTAAC 1 cut(s) 613
HpaII CCGG 3 cut(s) 227, 442, 973
HphI GGTGA 1 cut(s) 908
Hpy166II GTNNAC 7 cut(s) 476, 613, 753, 940, 1056, 1107, 1122
Hpy188I TCNGA 4 cut(s) 62, 294, 334, 988
Hpy188III TCNNGA 7 cut(s) 407, 442, 538, 557, 768, 914, 973
Hpy8I GTNNAC 7 cut(s) 476, 613, 753, 940, 1056, 1107, 1122
HpyAV CCTTC 4 cut(s) 392, 951, 994, 1124
HpyCH4III ACNGT 2 cut(s) 16, 463
HpyCH4IV ACGT 2 cut(s) 19, 329
HpyCH4V TGCA 8 cut(s) 74, 186, 269, 302, 476, 753, 805, 1122
HpyF10VI GCNNNNNNNGC 3 cut(s) 367, 473, 1153
HpyF3I CTNAG 5 cut(s) 333, 498, 671, 789, 1148
HpySE526I ACGT 2 cut(s) 19, 329
Hsp92I GRCGYC 1 cut(s) 1174
Hsp92II CATG 5 cut(s) 120, 209, 247, 434, 850
HspAI GCGC 2 cut(s) 1145, 1174
KasI GGCGCC 1 cut(s) 1173
Kpn2I TCCGGA 2 cut(s) 441, 972
KspAI GTTAAC 1 cut(s) 613
Kzo9I GATC 5 cut(s) 397, 546, 850, 1179, 1194
LmnI GCTCC 2 cut(s) 37, 157
Lsp1109I GCAGC 3 cut(s) 253, 286, 331
LweI GCATC 2 cut(s) 139, 346
MaeI CTAG 1 cut(s) 1065
MaeII ACGT 2 cut(s) 19, 329
MaeIII GTNAC 1 cut(s) 41
MalI GATC 5 cut(s) 399, 548, 852, 1181, 1196
MboI GATC 5 cut(s) 397, 546, 850, 1179, 1194
MboII GAAGA 6 cut(s) 104, 147, 158, 356, 553, 556
MflI RGATCY 3 cut(s) 546, 850, 1194
MhlI GDGCHC 4 cut(s) 107, 478, 755, 1124
MlsI TGGCCA 1 cut(s) 419
MluCI AATT 6 cut(s) 270, 354, 489, 552, 806, 1140
MluNI TGGCCA 1 cut(s) 419
Mly113I GGCGCC 1 cut(s) 1174
MmeI TCCRAC 1 cut(s) 817
MnlI CCTC 9 cut(s) 131, 274, 333, 448, 588, 622, 638, 697, 928
Mox20I TGGCCA 1 cut(s) 419
MroI TCCGGA 2 cut(s) 441, 972
MscI TGGCCA 1 cut(s) 419
MseI TTAA 4 cut(s) 24, 258, 612, 1037
Msp20I TGGCCA 1 cut(s) 419
MspI CCGG 3 cut(s) 227, 442, 973
MspR9I CCNGG 5 cut(s) 227, 228, 621, 714, 819
MvaI CCWGG 3 cut(s) 621, 714, 819
MvnI CGCG 1 cut(s) 812
MwoI GCNNNNNNNGC 3 cut(s) 367, 473, 1153
NarI GGCGCC 1 cut(s) 1174
NciI CCSGG 2 cut(s) 227, 228
NcoI CCATGG 1 cut(s) 846
NdeI CATATG 1 cut(s) 130
NdeII GATC 5 cut(s) 397, 546, 850, 1179, 1194
NlaIII CATG 5 cut(s) 120, 209, 247, 434, 850
NlaIV GGNNCC 6 cut(s) 816, 852, 971, 1175, 1190, 1207
NspI RCATGY 1 cut(s) 209
PciI ACATGT 1 cut(s) 205
PfeI GAWTC 1 cut(s) 691
PkrI GCNGC 3 cut(s) 268, 301, 346
PluTI GGCGCC 1 cut(s) 1177
PscI ACATGT 1 cut(s) 205
Psp6I CCWGG 3 cut(s) 619, 712, 817
PspFI CCCAGC 1 cut(s) 318
PspGI CCWGG 3 cut(s) 619, 712, 817
PspN4I GGNNCC 6 cut(s) 816, 852, 971, 1175, 1190, 1207
PspPI GGNCC 3 cut(s) 229, 970, 1189
PstI CTGCAG 1 cut(s) 188
PsuI RGATCY 3 cut(s) 546, 850, 1194
RsaI GTAC 4 cut(s) 13, 18, 460, 533
RsaNI GTAC 4 cut(s) 12, 17, 459, 532
SalI GTCGAC 1 cut(s) 1054
SaqAI TTAA 4 cut(s) 24, 258, 612, 1037
SatI GCNGC 3 cut(s) 267, 300, 345
Sau3AI GATC 5 cut(s) 397, 546, 850, 1179, 1194
Sau96I GGNCC 3 cut(s) 229, 970, 1189
ScrFI CCNGG 5 cut(s) 227, 228, 621, 714, 819
SduI GDGCHC 4 cut(s) 107, 478, 755, 1124
SfaNI GCATC 2 cut(s) 139, 346
SfcI CTRYAG 2 cut(s) 184, 462
SfoI GGCGCC 1 cut(s) 1175
SinI GGWCC 1 cut(s) 970
SmaI CCCGGG 1 cut(s) 228
SmlI CTYRAG 1 cut(s) 932
SmoI CTYRAG 1 cut(s) 932
SrfI GCCCGGGC 1 cut(s) 228
Sse9I AATT 6 cut(s) 270, 354, 489, 552, 806, 1140
SsiI CCGC 3 cut(s) 648, 812, 869
SspDI GGCGCC 1 cut(s) 1173
SspI AATATT 2 cut(s) 514, 1042
SspMI CTAG 1 cut(s) 1065
StyD4I CCNGG 5 cut(s) 225, 226, 619, 712, 817
StyI CCWWGG 2 cut(s) 846, 1017
TaaI ACNGT 2 cut(s) 16, 463
TaiI ACGT 2 cut(s) 22, 332
TaqI TCGA 3 cut(s) 606, 767, 1055
TasI AATT 6 cut(s) 270, 354, 489, 552, 806, 1140
TatI WGTACW 1 cut(s) 531
TfiI GAWTC 1 cut(s) 691
Tru1I TTAA 4 cut(s) 24, 258, 612, 1037
Tru9I TTAA 4 cut(s) 24, 258, 612, 1037
TscAI CASTG 1 cut(s) 1175
TseI GCWGC 3 cut(s) 266, 299, 344
TspDTI ATGAA 3 cut(s) 206, 321, 447
TspMI CCCGGG 1 cut(s) 226
TspRI CASTG 1 cut(s) 1175
VneI GTGCAC 3 cut(s) 474, 751, 1120
VpaK11BI GGWCC 1 cut(s) 970
XceI RCATGY 1 cut(s) 209
XcmI CCANNNNNNNNNTGG 1 cut(s) 1199
XmaI CCCGGG 1 cut(s) 226
XmiI GTMKAC 1 cut(s) 1055
XspI CTAG 1 cut(s) 1065
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.