Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002084

Physical Location & Seq

Genomic Coordinates Reverse (-)

57144841 .. 57146192

Gene Structure 1352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00207260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGCTACTATGCTTAATGGTGTGTCCATTACGGATGGAGCGTTACTTGTCGTAGCTGCTGACGAACAGCAACTGGAAGCTGTTGAAAACATGTCTCTTAAACAAAACATTGTGCTTCAAAACAAAATTGACCTTGTCCGAGAGAAGGCAATCAAGCATGAACGAGTACATTGTCAAGAACATCCCCATCCGGAAAGGGACTTTGTTTCGCCTCCTTATATGAGGATCATACGTTCGTTTGATGTCAATAAACCTGGGTTGGGGATTGATGACATAAAAGGTGCTGTGGCTGGTGGAACCCTTCTTAGGGGTGCTTTGAAACTGAACCAATTGGTCGAGTCAAGTTGCAATTTGGAGGAGCTCATGTTTGGATTGGGATCACAAGATTTAGAATTGGATGCTTGTGGTCAAGGTGGAGCTATTGGAATTCAGATCATGAGACAATTGAAGATGGCTCGAATCACGCCAAGGTGGAGATTGTTGGAAAAATGTGGCTTAGTTTCCTTGTTTGCTGAGGAAAATGAGTCGCAGTTTGCTGTGCCAGGAGGTCTGATTGGGGTTGGCATAACCTTGGATCCTGCTTTGACTCGCGGGGATAAATTGGTGGGTCAAGTCGTTGGTGATGTTGGCTCACTCCCTGATGTGTATGCACAACTTGAGGTGCATTACCACATGACTAAGGGATCAGCAGAGAAGAAGGGGTATCAAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0003824 GO:0003924 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005850 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006810 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

GTP_EFTU GTP_EFTU_D2 eIF2_C

Protein Analysis

237

Amino Acids

25.77

Weight (kDa)

5.55

Isoelectric Point (pI)

39.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04170 AT1G04170 AT2G18720 AT2G18720 AT2G18720 AT4G18330
fragaria_vesca	FvH4_4g18420 FvH4_4g18420 FvH4_4g18420
malus_domestica	MD00G1127900.v1.1 MD16G1166900.v1.1
prunus_persica	Prupe.1G133900_v2.0.a1 Prupe.1G133900_v2.0.a1
pyrus_communis	pycom13g14270 pycom16g14090
rosa_chinensis	RchiOBHm_Chr3g0454951 RchiOBHm_Chr4g0422871 RchiOBHm_Chr4g0422891
rosa_laevigata	RLG00000007598 RLG00000025399
rosa_multiflora	Rmu_sc0000744.1_g000135 Rmu_sc0000830.1_g000040 Rmu_sc0001792.1_g000003 Rmu_sc0002169.1_g000007 Rmu_sc0012762.1_g000009
rosa_roxburghii	Rroxscaffold_5G00364730 Rroxscaffold_6G00424660 Rroxscaffold_7G00207260
rosa_rugosa	Rorug03G0003100 Rorug04G0182000 Rorug04G0182500
rosa_samantha	Rh3AG063000 Rh3BG064900 Rh3CG063800 Rh3DG064900 Rh4AG242400 Rh4AG242600 Rh4BG246000 Rh4BG246200 Rh4CG256400
rosa_wichuraiana	Rw0G015780 Rw0G018540 Rw3G004940 Rw4G020880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	591
AccIII	TCCGGA	1 cut(s)	190
AciI	CCGC	1 cut(s)	591
AclWI	GGATC	5 cut(s)	233, 385, 569, 582, 691
AcsI	RAATTY	1 cut(s)	426
AfaI	GTAC	1 cut(s)	168
AfiI	CCNNNNNNNGG	4 cut(s)	145, 260, 306, 307
AflIII	ACRYGT	1 cut(s)	90
AgsI	TTSAA	4 cut(s)	86, 119, 319, 448
AjnI	CCWGG	2 cut(s)	253, 541
AloI	GAACNNNNNNTCC	2 cut(s)	217, 249
AluBI	AGCT	4 cut(s)	56, 80, 361, 419
AluI	AGCT	4 cut(s)	56, 80, 361, 419
Alw21I	GWGCWC	1 cut(s)	363
Alw26I	GTCTC	2 cut(s)	99, 433
AlwI	GGATC	5 cut(s)	233, 385, 569, 582, 691
AlwNI	CAGNNNCTG	1 cut(s)	73
Aor13HI	TCCGGA	1 cut(s)	190
ApeKI	GCWGC	1 cut(s)	56
ApoI	RAATTY	1 cut(s)	426
AsuHPI	GGTGA	1 cut(s)	632
BamHI	GGATCC	1 cut(s)	574
BanII	GRGCYC	1 cut(s)	363
Bbv12I	GWGCWC	1 cut(s)	363
BbvCI	CCTCAGC	1 cut(s)	513
BbvI	GCAGC	1 cut(s)	43
BccI	CCATC	3 cut(s)	29, 195, 445
BciT130I	CCWGG	2 cut(s)	255, 543
BcoDI	GTCTC	2 cut(s)	99, 433
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
Bme1390I	CCNGG	2 cut(s)	255, 543
BmiI	GGNNCC	2 cut(s)	298, 576
BmrFI	CCNGG	2 cut(s)	255, 543
BmsI	GCATC	1 cut(s)	388
Bpu10I	CCTNAGC	1 cut(s)	513
BpuEI	CTTGAG	1 cut(s)	677
BsaBI	GATNNNNATC	1 cut(s)	376
BsaJI	CCNNGG	3 cut(s)	254, 467, 570
BsaWI	WCCGGW	1 cut(s)	190
BsaXI	ACNNNNNCTCC	2 cut(s)	350, 380
Bsc4I	CCNNNNNNNGG	4 cut(s)	145, 260, 306, 307
Bse1I	ACTGG	1 cut(s)	78
Bse8I	GATNNNNATC	1 cut(s)	376
BseAI	TCCGGA	1 cut(s)	190
BseBI	CCWGG	2 cut(s)	255, 543
BseDI	CCNNGG	3 cut(s)	254, 467, 570
BseGI	GGATG	4 cut(s)	40, 181, 187, 403
BseJI	GATNNNNATC	1 cut(s)	376
BseLI	CCNNNNNNNGG	4 cut(s)	145, 260, 306, 307
BseMII	CTCAG	1 cut(s)	504
BseNI	ACTGG	1 cut(s)	78
BseRI	GAGGAG	1 cut(s)	371
BseXI	GCAGC	1 cut(s)	43
Bsh1236I	CGCG	1 cut(s)	591
BsiHKAI	GWGCWC	1 cut(s)	363
BsiSI	CCGG	1 cut(s)	191
BslFI	GGGAC	1 cut(s)	212
BslI	CCNNNNNNNGG	4 cut(s)	145, 260, 306, 307
BsmAI	GTCTC	2 cut(s)	99, 433
BsmFI	GGGAC	1 cut(s)	212
Bsp1286I	GDGCHC	1 cut(s)	363
Bsp13I	TCCGGA	1 cut(s)	190
Bsp143I	GATC	5 cut(s)	225, 377, 432, 574, 683
BspACI	CCGC	1 cut(s)	591
BspCNI	CTCAG	1 cut(s)	505
BspEI	TCCGGA	1 cut(s)	190
BspFNI	CGCG	1 cut(s)	591
BspHI	TCATGA	1 cut(s)	435
BspLI	GGNNCC	2 cut(s)	298, 576
BspPI	GGATC	5 cut(s)	233, 385, 569, 582, 691
BsrI	ACTGG	1 cut(s)	78
BssECI	CCNNGG	3 cut(s)	254, 467, 570
BssMI	GATC	5 cut(s)	225, 377, 432, 574, 683
BssT1I	CCWWGG	2 cut(s)	467, 570
Bst2UI	CCWGG	2 cut(s)	255, 543
BstDEI	CTNAG	4 cut(s)	305, 496, 513, 678
BstF5I	GGATG	4 cut(s)	40, 181, 187, 403
BstFNI	CGCG	1 cut(s)	591
BstKTI	GATC	5 cut(s)	228, 380, 435, 577, 686
BstMAI	GTCTC	2 cut(s)	99, 433
BstMBI	GATC	5 cut(s)	225, 377, 432, 574, 683
BstNI	CCWGG	2 cut(s)	255, 543
BstNSI	RCATGY	1 cut(s)	94
BstSCI	CCNGG	2 cut(s)	253, 541
BstUI	CGCG	1 cut(s)	591
BstV1I	GCAGC	1 cut(s)	43
BstX2I	RGATCY	1 cut(s)	574
BstYI	RGATCY	1 cut(s)	574
BtsCI	GGATG	4 cut(s)	40, 181, 187, 403
CaiI	CAGNNNCTG	1 cut(s)	73
CciI	TCATGA	1 cut(s)	435
Csp6I	GTAC	1 cut(s)	167
CviAII	CATG	5 cut(s)	91, 158, 364, 436, 673
CviJI	RGCY	9 cut(s)	5, 56, 80, 290, 361, 419, 455, 495, 630
CviKI_1	RGCY	9 cut(s)	5, 56, 80, 290, 361, 419, 455, 495, 630
CviQI	GTAC	1 cut(s)	167
DdeI	CTNAG	4 cut(s)	305, 496, 513, 678
DpnI	GATC	5 cut(s)	227, 379, 434, 576, 685
DpnII	GATC	5 cut(s)	225, 377, 432, 574, 683
Ecl136II	GAGCTC	1 cut(s)	361
Eco130I	CCWWGG	2 cut(s)	467, 570
Eco24I	GRGCYC	1 cut(s)	363
Eco53kI	GAGCTC	1 cut(s)	361
EcoICRI	GAGCTC	1 cut(s)	361
EcoRI	GAATTC	1 cut(s)	426
EcoRII	CCWGG	2 cut(s)	253, 541
EcoT14I	CCWWGG	2 cut(s)	467, 570
EcoT38I	GRGCYC	1 cut(s)	363
ErhI	CCWWGG	2 cut(s)	467, 570
FaeI	CATG	5 cut(s)	94, 161, 367, 439, 676
FaqI	GGGAC	1 cut(s)	212
FatI	CATG	5 cut(s)	90, 157, 363, 435, 672
FauI	CCCGC	1 cut(s)	584
Fnu4HI	GCNGC	1 cut(s)	57
FokI	GGATG	4 cut(s)	47, 168, 174, 410
FriOI	GRGCYC	1 cut(s)	363
Fsp4HI	GCNGC	1 cut(s)	57
GluI	GCNGC	1 cut(s)	57
HapII	CCGG	1 cut(s)	191
Hin1II	CATG	5 cut(s)	94, 161, 367, 439, 676
HinfI	GANTC	4 cut(s)	338, 459, 524, 586
HpaII	CCGG	1 cut(s)	191
HphI	GGTGA	1 cut(s)	632
Hpy188I	TCNGA	3 cut(s)	140, 432, 552
Hpy188III	TCNNGA	3 cut(s)	176, 191, 436
HpyAV	CCTTC	3 cut(s)	139, 311, 691
HpyCH4IV	ACGT	1 cut(s)	232
HpyCH4V	TGCA	3 cut(s)	348, 650, 664
HpyF3I	CTNAG	4 cut(s)	305, 496, 513, 678
HpySE526I	ACGT	1 cut(s)	232
Hsp92II	CATG	5 cut(s)	94, 161, 367, 439, 676
Kpn2I	TCCGGA	1 cut(s)	190
Kzo9I	GATC	5 cut(s)	225, 377, 432, 574, 683
LmnI	GCTCC	3 cut(s)	38, 358, 416
LpnPI	CCDG	9 cut(s)	59, 204, 240, 267, 276, 528, 555, 591, 651
Lsp1109I	GCAGC	1 cut(s)	43
LweI	GCATC	1 cut(s)	388
MaeII	ACGT	1 cut(s)	232
MaeIII	GTNAC	1 cut(s)	42
MalI	GATC	5 cut(s)	227, 379, 434, 576, 685
MboI	GATC	5 cut(s)	225, 377, 432, 574, 683
MboII	GAAGA	2 cut(s)	460, 706
MfeI	CAATTG	2 cut(s)	329, 443
MflI	RGATCY	1 cut(s)	574
MhlI	GDGCHC	1 cut(s)	363
MluCI	AATT	7 cut(s)	126, 329, 349, 392, 426, 443, 599
MlyI	GAGTC	3 cut(s)	347, 533, 580
MmeI	TCCRAC	1 cut(s)	462
MnlI	CCTC	6 cut(s)	216, 222, 349, 508, 539, 652
MroI	TCCGGA	1 cut(s)	190
MseI	TTAA	3 cut(s)	15, 99, 712
MspI	CCGG	1 cut(s)	191
MspR9I	CCNGG	2 cut(s)	255, 543
MunI	CAATTG	2 cut(s)	329, 443
MvaI	CCWGG	2 cut(s)	255, 543
MvnI	CGCG	1 cut(s)	591
NdeII	GATC	5 cut(s)	225, 377, 432, 574, 683
NlaIII	CATG	5 cut(s)	94, 161, 367, 439, 676
NlaIV	GGNNCC	2 cut(s)	298, 576
NspI	RCATGY	1 cut(s)	94
PagI	TCATGA	1 cut(s)	435
PciI	ACATGT	1 cut(s)	90
PcsI	WCGNNNNNNNCGW	1 cut(s)	38
PfeI	GAWTC	1 cut(s)	459
PflFI	GACNNNGTC	1 cut(s)	134
PkrI	GCNGC	1 cut(s)	58
PleI	GAGTC	3 cut(s)	346, 532, 580
PpsI	GAGTC	3 cut(s)	346, 532, 580
PscI	ACATGT	1 cut(s)	90
Psp124BI	GAGCTC	1 cut(s)	363
Psp6I	CCWGG	2 cut(s)	253, 541
PspGI	CCWGG	2 cut(s)	253, 541
PspN4I	GGNNCC	2 cut(s)	298, 576
PstNI	CAGNNNCTG	1 cut(s)	73
PsuI	RGATCY	1 cut(s)	574
PsyI	GACNNNGTC	1 cut(s)	134
RsaI	GTAC	1 cut(s)	168
RsaNI	GTAC	1 cut(s)	167
SacI	GAGCTC	1 cut(s)	363
SaqAI	TTAA	3 cut(s)	15, 99, 712
SatI	GCNGC	1 cut(s)	57
Sau3AI	GATC	5 cut(s)	225, 377, 432, 574, 683
SchI	GAGTC	3 cut(s)	347, 533, 580
ScrFI	CCNGG	2 cut(s)	255, 543
SduI	GDGCHC	1 cut(s)	363
SfaNI	GCATC	1 cut(s)	388
SmlI	CTYRAG	1 cut(s)	656
SmoI	CTYRAG	1 cut(s)	656
Sse9I	AATT	7 cut(s)	126, 329, 349, 392, 426, 443, 599
SsiI	CCGC	1 cut(s)	591
SstI	GAGCTC	1 cut(s)	363
StyD4I	CCNGG	2 cut(s)	253, 541
StyI	CCWWGG	2 cut(s)	467, 570
TaiI	ACGT	1 cut(s)	235
TaqI	TCGA	2 cut(s)	336, 457
TasI	AATT	7 cut(s)	126, 329, 349, 392, 426, 443, 599
TatI	WGTACW	1 cut(s)	166
TfiI	GAWTC	1 cut(s)	459
Tru1I	TTAA	3 cut(s)	15, 99, 712
Tru9I	TTAA	3 cut(s)	15, 99, 712
TseI	GCWGC	1 cut(s)	56
TspDTI	ATGAA	1 cut(s)	174
TspGWI	ACGGA	1 cut(s)	47
Tth111I	GACNNNGTC	1 cut(s)	134
XapI	RAATTY	1 cut(s)	426
XceI	RCATGY	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.