FvH4_4g18420

Eukaryotic translation initiation factor 2 subunit

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
22297445 .. 22302067
4623 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g18420.t2

Sequence Viewer

Length: 1395 bp
ATGTCGAGGAAGGGATTGATGGAGCAGGATCTCAGTAAGCTGGATGTCACTACTTTACATCCACTCTCACCTGAAGTGATATCCCGCCAAGCGACTATCAATATTGGTACTATTGGTCACGTGGCTCACGGGAAGTCGACGGTTGTGAAGGCAATTTCTGGTGTTCAGACTGTACGTTTTAAAAATGAGCTGGAGCGTAACATTACTATCAAGCTTGGATACGCAAATGCAAAAATCTACAAATGTGAAGATGAGAAGTGCCCGCGACCTTCATGCTACAAGGCATATGGAAGTGGAAAAGAAGATGCTCCCCTATGTGATGTTGCTGGATTTGAGAACTGCAGGATGAAGTTGCTGCGACATGTATCATTTGTAGATTGCCCGGGCCACGATATTCTCATGGCTACTATGCTTAATGGGGCTGCAATTATGGACGGTGCATTGCTTCTGATAGCTGCAAATGAAAGCTGTCCCCAGCCACAAACATCTGAACATCTTGCTGCTGTGGAAATTATGCGTCTTCAGCATATCATTATCCTTCAAAATAAGGTTGATCTCATTCAGGAGAATGTGGCCATCAACCAACATGAGGCAATCCGGAAGTTTATTGAGGGTACTGTAGCTGATGGTGCACCAGTTGTGCCAATTTCTGCTCAGTTGAAATACAATATTGATGTAGTGTGTGAGTACATCGTGAAAAAGATCCCAATTCCAGAAAGGAACTTCATCTCGCCTCCAAATATGATTGTTATTCGGTCTTTCGATGTCAACAAACCTGGATTTGAGGTTGATGAGATACGAGGTGGTGTAGCTGGTGGAAGTATTCTCAGGGGTGTTTTGAAAGTGAATCAGTTTATTGAGGTTCGCCCTGGTATTGTTGTGAAAGATGAGTCTGGCAACATAAAGTGCACACCAATATATTCCAGAATAGTCTCACTGTATGCTGAGCAGAATGAGTTGCAATTTGCCGTTCCAGGTGGACTCATAGGGGTTGGAACAACTATGGATCCCACTTTGACGCGTGCGGATAGATTAGTGGGGCAAGTTCTCGGTGAAGTAGGCTCACTTCCTGAAGTGTTTGTTGAGCTTGAGGTAAACTTTTTCCTTTTGAGAAGGCTTCTGGGGGTCCGGACAAAGGGTTCTGAAAAGCAGGGGAAGGTCTCCAAGCTTGCCAAGGCCGAGATACTCATGTTGAATATTGGATCTATGTCAACTGGTGCTAGGGTAATTGCCGTGAGAAATGATTTAGCTAAGCTTCAGTTGACTTCTCCTGTGTGCACAAGCAAAGGAGAGAAGATTGCACTGAGTAGAAGGGTCGAGAAGCACTGGCGTCTGATCGGTTGGGGACAGATCCAGGCCGGAACCACACTTGAAGTCCCACCCTGCCCGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

465

Amino Acids

50.71

Weight (kDa)

8.75

Isoelectric Point (pI)

42.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GTP_EFTU PF00009 32 - 236 9.9e-26 Elongation factor Tu GTP binding domain
GTP_EFTU_D2 PF03144 268 - 350 2.4e-08 Elongation factor Tu domain 2
eIF2_C PF09173 362 - 451 1.2e-32 Initiation factor eIF2 gamma, C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 137
AccII CGCG 2 cut(s) 265, 1021
AccIII TCCGGA 2 cut(s) 597, 1128
AciI CCGC 3 cut(s) 85, 263, 1025
AclWI GGATC 6 cut(s) 36, 697, 1001, 1014, 1210, 1345
AcoI YGGCCR 1 cut(s) 573
AcuI CTGAAG 4 cut(s) 93, 506, 1092, 1241
AcvI CACGTG 1 cut(s) 121
AcyI GRCGYC 1 cut(s) 1330
AfaI GTAC 4 cut(s) 109, 174, 616, 689
AfiI CCNNNNNNNGG 2 cut(s) 589, 1135
AflIII ACRYGT 2 cut(s) 361, 1019
AgsI TTSAA 5 cut(s) 542, 661, 841, 1195, 1373
AjnI CCWGG 4 cut(s) 775, 868, 973, 1353
AloI GAACNNNNNNTCC 2 cut(s) 1123, 1155
Alw21I GWGCWC 3 cut(s) 634, 911, 1280
Alw26I GTCTC 2 cut(s) 937, 1165
Alw44I GTGCAC 3 cut(s) 630, 907, 1276
AlwI GGATC 6 cut(s) 36, 697, 1001, 1014, 1210, 1345
Ama87I CYCGRG 1 cut(s) 382
Aor13HI TCCGGA 2 cut(s) 597, 1128
AoxI GGCC 4 cut(s) 385, 573, 1176, 1356
ApaLI GTGCAC 3 cut(s) 630, 907, 1276
ApeKI GCWGC 4 cut(s) 355, 422, 455, 500
AspS9I GGNCC 2 cut(s) 385, 1126
AsuC2I CCSGG 2 cut(s) 383, 384
AsuHPI GGTGA 2 cut(s) 60, 1064
AvaI CYCGRG 1 cut(s) 382
AvaII GGWCC 1 cut(s) 1126
BaeGI GKGCMC 4 cut(s) 263, 634, 911, 1280
BaeI ACNNNNGTAYC 2 cut(s) 1175, 1208
BalI TGGCCA 1 cut(s) 575
BamHI GGATCC 1 cut(s) 1006
BarI GAAGNNNNNNTAC 2 cut(s) 1050, 1082
BbrPI CACGTG 1 cut(s) 121
BbsI GAAGAC 1 cut(s) 512
Bbv12I GWGCWC 3 cut(s) 634, 911, 1280
BbvI GCAGC 4 cut(s) 342, 409, 442, 487
BccI CCATC 3 cut(s) 13, 584, 620
BceAI ACGGC 2 cut(s) 953, 1217
BcgI CGANNNNNNTGC 2 cut(s) 255, 289
BciT130I CCWGG 4 cut(s) 777, 870, 975, 1355
BciVI GTATCC 1 cut(s) 212
BcnI CCSGG 2 cut(s) 383, 384
BcoDI GTCTC 2 cut(s) 937, 1165
BfaI CTAG 1 cut(s) 1221
BfmI CTRYAG 2 cut(s) 340, 618
BfuI GTATCC 1 cut(s) 212
BisI GCNGC 4 cut(s) 356, 423, 456, 501
BlpI GCTNAGC 2 cut(s) 945, 1251
BlsI GCNGC 4 cut(s) 357, 424, 457, 502
Bme1390I CCNGG 6 cut(s) 383, 384, 777, 870, 975, 1355
Bme18I GGWCC 1 cut(s) 1126
BmeT110I CYCGRG 1 cut(s) 382
BmgT120I GGNCC 2 cut(s) 385, 1126
BmiI GGNNCC 3 cut(s) 1008, 1127, 1363
BmrFI CCNGG 6 cut(s) 383, 384, 777, 870, 975, 1355
BmsI GCATC 1 cut(s) 295
BpiI GAAGAC 1 cut(s) 512
BpmI CTGGAG 1 cut(s) 212
Bpu1102I GCTNAGC 2 cut(s) 945, 1251
BpuEI CTTGAG 1 cut(s) 1109
BpuMI CCSGG 2 cut(s) 383, 384
BsaAI YACGTR 1 cut(s) 121
BsaHI GRCGYC 1 cut(s) 1330
BsaI GGTCTC 1 cut(s) 1165
BsaJI CCNNGG 3 cut(s) 382, 868, 1173
BsaWI WCCGGW 2 cut(s) 597, 1128
Bsc4I CCNNNNNNNGG 2 cut(s) 589, 1135
Bse1I ACTGG 3 cut(s) 635, 1219, 1331
Bse3DI GCAATG 1 cut(s) 440
BseAI TCCGGA 2 cut(s) 597, 1128
BseBI CCWGG 4 cut(s) 777, 870, 975, 1355
BseDI CCNNGG 3 cut(s) 382, 868, 1173
BseGI GGATG 3 cut(s) 49, 58, 351
BseLI CCNNNNNNNGG 2 cut(s) 589, 1135
BseMI GCAATG 1 cut(s) 440
BseMII CTCAG 5 cut(s) 46, 668, 841, 936, 1295
BseNI ACTGG 3 cut(s) 635, 1219, 1331
BseSI GKGCMC 4 cut(s) 263, 634, 911, 1280
BseXI GCAGC 4 cut(s) 342, 409, 442, 487
BseYI CCCAGC 1 cut(s) 474
Bsh1236I CGCG 2 cut(s) 265, 1021
BshFI GGCC 4 cut(s) 387, 575, 1178, 1358
BsiHKAI GWGCWC 3 cut(s) 634, 911, 1280
BsiHKCI CYCGRG 1 cut(s) 382
BsiSI CCGG 4 cut(s) 383, 598, 1129, 1359
BslFI GGGAC 3 cut(s) 456, 1359, 1361
BslI CCNNNNNNNGG 2 cut(s) 589, 1135
BsmAI GTCTC 2 cut(s) 937, 1165
BsmFI GGGAC 3 cut(s) 456, 1359, 1361
BsnI GGCC 4 cut(s) 387, 575, 1178, 1358
Bso31I GGTCTC 1 cut(s) 1165
BsoBI CYCGRG 1 cut(s) 382
Bsp1286I GDGCHC 4 cut(s) 263, 634, 911, 1280
Bsp13I TCCGGA 2 cut(s) 597, 1128
Bsp143I GATC 7 cut(s) 28, 553, 702, 1006, 1202, 1335, 1350
Bsp1720I GCTNAGC 2 cut(s) 945, 1251
BspACI CCGC 3 cut(s) 85, 263, 1025
BspANI GGCC 4 cut(s) 387, 575, 1178, 1358
BspCNI CTCAG 5 cut(s) 45, 667, 840, 937, 1296
BspEI TCCGGA 2 cut(s) 597, 1128
BspFNI CGCG 2 cut(s) 265, 1021
BspLI GGNNCC 3 cut(s) 1008, 1127, 1363
BspMAI CTGCAG 1 cut(s) 344
BspPI GGATC 6 cut(s) 36, 697, 1001, 1014, 1210, 1345
BspTNI GGTCTC 1 cut(s) 1165
BsrDI GCAATG 1 cut(s) 440
BsrI ACTGG 3 cut(s) 635, 1219, 1331
BssECI CCNNGG 3 cut(s) 382, 868, 1173
BssMI GATC 7 cut(s) 28, 553, 702, 1006, 1202, 1335, 1350
BssNI GRCGYC 1 cut(s) 1330
BssT1I CCWWGG 1 cut(s) 1173
Bst2UI CCWGG 4 cut(s) 777, 870, 975, 1355
Bst4CI ACNGT 5 cut(s) 142, 172, 437, 619, 939
BstACI GRCGYC 1 cut(s) 1330
BstBAI YACGTR 1 cut(s) 121
BstC8I GCNNGC 3 cut(s) 263, 1023, 1170
BstDEI CTNAG 6 cut(s) 32, 654, 827, 945, 1251, 1304
BstF5I GGATG 3 cut(s) 49, 58, 351
BstFNI CGCG 2 cut(s) 265, 1021
BstKTI GATC 7 cut(s) 31, 556, 705, 1009, 1205, 1338, 1353
BstMAI GTCTC 2 cut(s) 937, 1165
BstMBI GATC 7 cut(s) 28, 553, 702, 1006, 1202, 1335, 1350
BstMWI GCNNNNNNNGC 2 cut(s) 523, 629
BstNI CCWGG 4 cut(s) 777, 870, 975, 1355
BstNSI RCATGY 1 cut(s) 365
BstSCI CCNGG 6 cut(s) 381, 382, 775, 868, 973, 1353
BstSFI CTRYAG 2 cut(s) 340, 618
BstSLI GKGCMC 4 cut(s) 263, 634, 911, 1280
BstUI CGCG 2 cut(s) 265, 1021
BstV1I GCAGC 4 cut(s) 342, 409, 442, 487
BstV2I GAAGAC 1 cut(s) 512
BstX2I RGATCY 5 cut(s) 28, 702, 1006, 1202, 1350
BstYI RGATCY 5 cut(s) 28, 702, 1006, 1202, 1350
BsuI GTATCC 1 cut(s) 212
BsuRI GGCC 4 cut(s) 387, 575, 1178, 1358
BtsCI GGATG 3 cut(s) 49, 58, 351
BtsIMutI CAGTG 3 cut(s) 935, 1301, 1324
Cac8I GCNNGC 3 cut(s) 263, 1023, 1170
Cfr13I GGNCC 2 cut(s) 385, 1126
Cfr9I CCCGGG 1 cut(s) 382
CseI GACGC 3 cut(s) 506, 1027, 1319
Csp6I GTAC 4 cut(s) 108, 173, 615, 688
CviAII CATG 5 cut(s) 273, 362, 400, 587, 1189
CviQI GTAC 4 cut(s) 108, 173, 615, 688
DdeI CTNAG 6 cut(s) 32, 654, 827, 945, 1251, 1304
DpnI GATC 7 cut(s) 30, 555, 704, 1008, 1204, 1337, 1352
DpnII GATC 7 cut(s) 28, 553, 702, 1006, 1202, 1335, 1350
DraI TTTAAA 1 cut(s) 181
EaeI YGGCCR 1 cut(s) 573
Eco130I CCWWGG 1 cut(s) 1173
Eco31I GGTCTC 1 cut(s) 1165
Eco32I GATATC 1 cut(s) 81
Eco47I GGWCC 1 cut(s) 1126
Eco57I CTGAAG 4 cut(s) 93, 506, 1092, 1241
Eco72I CACGTG 1 cut(s) 121
Eco88I CYCGRG 1 cut(s) 382
EcoRII CCWGG 4 cut(s) 775, 868, 973, 1353
EcoRV GATATC 1 cut(s) 81
EcoT14I CCWWGG 1 cut(s) 1173
ErhI CCWWGG 1 cut(s) 1173
FaeI CATG 5 cut(s) 276, 365, 403, 590, 1192
FaqI GGGAC 3 cut(s) 456, 1359, 1361
FatI CATG 5 cut(s) 272, 361, 399, 586, 1188
FauI CCCGC 2 cut(s) 92, 270
FauNDI CATATG 1 cut(s) 286
FblI GTMKAC 1 cut(s) 137
Fnu4HI GCNGC 4 cut(s) 356, 423, 456, 501
FokI GGATG 3 cut(s) 45, 56, 358
Fsp4HI GCNGC 4 cut(s) 356, 423, 456, 501
FspBI CTAG 1 cut(s) 1221
GluI GCNGC 4 cut(s) 356, 423, 456, 501
GsaI CCCAGC 1 cut(s) 478
GsuI CTGGAG 1 cut(s) 212
HaeIII GGCC 4 cut(s) 387, 575, 1178, 1358
HapII CCGG 4 cut(s) 383, 598, 1129, 1359
HgaI GACGC 3 cut(s) 506, 1027, 1319
Hin1I GRCGYC 1 cut(s) 1330
Hin1II CATG 5 cut(s) 276, 365, 403, 590, 1192
HincII GTYRAC 4 cut(s) 138, 769, 1212, 1263
HindII GTYRAC 4 cut(s) 138, 769, 1212, 1263
HindIII AAGCTT 3 cut(s) 212, 1166, 1253
HinfI GANTC 3 cut(s) 847, 890, 981
HpaII CCGG 4 cut(s) 383, 598, 1129, 1359
HphI GGTGA 2 cut(s) 60, 1064
Hpy166II GTNNAC 9 cut(s) 138, 632, 769, 909, 980, 1096, 1212, 1263, 1278
Hpy188I TCNGA 5 cut(s) 168, 450, 490, 1144, 1335
Hpy188III TCNNGA 8 cut(s) 563, 598, 694, 713, 924, 1070, 1129, 1318
Hpy8I GTNNAC 9 cut(s) 138, 632, 769, 909, 980, 1096, 1212, 1263, 1278
Hpy99I CGWCG 1 cut(s) 142
HpyAV CCTTC 7 cut(s) 4, 142, 279, 548, 1107, 1150, 1305
HpyCH4III ACNGT 5 cut(s) 142, 172, 437, 619, 939
HpyCH4IV ACGT 2 cut(s) 120, 175
HpyF10VI GCNNNNNNNGC 2 cut(s) 523, 629
HpyF3I CTNAG 6 cut(s) 32, 654, 827, 945, 1251, 1304
HpySE526I ACGT 2 cut(s) 120, 175
Hsp92I GRCGYC 1 cut(s) 1330
Hsp92II CATG 5 cut(s) 276, 365, 403, 590, 1192
Kpn2I TCCGGA 2 cut(s) 597, 1128
Kzo9I GATC 7 cut(s) 28, 553, 702, 1006, 1202, 1335, 1350
LmnI GCTCC 3 cut(s) 22, 193, 313
Lsp1109I GCAGC 4 cut(s) 342, 409, 442, 487
LweI GCATC 1 cut(s) 295
MaeI CTAG 1 cut(s) 1221
MaeII ACGT 2 cut(s) 120, 175
MaeIII GTNAC 3 cut(s) 46, 116, 197
MalI GATC 7 cut(s) 30, 555, 704, 1008, 1204, 1337, 1352
MboI GATC 7 cut(s) 28, 553, 702, 1006, 1202, 1335, 1350
MboII GAAGA 4 cut(s) 260, 314, 512, 1306
MflI RGATCY 5 cut(s) 28, 702, 1006, 1202, 1350
MhlI GDGCHC 4 cut(s) 263, 634, 911, 1280
MlsI TGGCCA 1 cut(s) 575
MluCI AATT 7 cut(s) 153, 426, 510, 645, 708, 962, 1227
MluI ACGCGT 1 cut(s) 1019
MluNI TGGCCA 1 cut(s) 575
MlyI GAGTC 2 cut(s) 899, 975
MmeI TCCRAC 1 cut(s) 973
MnlI CCTC 7 cut(s) 583, 604, 744, 778, 794, 853, 1084
Mox20I TGGCCA 1 cut(s) 575
MroI TCCGGA 2 cut(s) 597, 1128
MscI TGGCCA 1 cut(s) 575
MseI TTAA 2 cut(s) 180, 414
Msp20I TGGCCA 1 cut(s) 575
MspI CCGG 4 cut(s) 383, 598, 1129, 1359
MspR9I CCNGG 6 cut(s) 383, 384, 777, 870, 975, 1355
MvaI CCWGG 4 cut(s) 777, 870, 975, 1355
MvnI CGCG 2 cut(s) 265, 1021
MwoI GCNNNNNNNGC 2 cut(s) 523, 629
NciI CCSGG 2 cut(s) 383, 384
NdeI CATATG 1 cut(s) 286
NdeII GATC 7 cut(s) 28, 553, 702, 1006, 1202, 1335, 1350
NlaIII CATG 5 cut(s) 276, 365, 403, 590, 1192
NlaIV GGNNCC 3 cut(s) 1008, 1127, 1363
NmeAIII GCCGAG 1 cut(s) 1204
NmuCI GTSAC 2 cut(s) 46, 116
NspI RCATGY 1 cut(s) 365
PciI ACATGT 1 cut(s) 361
PfeI GAWTC 1 cut(s) 847
PkrI GCNGC 4 cut(s) 357, 424, 457, 502
PleI GAGTC 2 cut(s) 898, 975
PmaCI CACGTG 1 cut(s) 121
PmlI CACGTG 1 cut(s) 121
PpsI GAGTC 2 cut(s) 898, 975
Ppu21I YACGTR 1 cut(s) 121
PscI ACATGT 1 cut(s) 361
Psp6I CCWGG 4 cut(s) 775, 868, 973, 1353
PspCI CACGTG 1 cut(s) 121
PspFI CCCAGC 1 cut(s) 474
PspGI CCWGG 4 cut(s) 775, 868, 973, 1353
PspN4I GGNNCC 3 cut(s) 1008, 1127, 1363
PspPI GGNCC 2 cut(s) 385, 1126
PstI CTGCAG 1 cut(s) 344
PsuI RGATCY 5 cut(s) 28, 702, 1006, 1202, 1350
RsaI GTAC 4 cut(s) 109, 174, 616, 689
RsaNI GTAC 4 cut(s) 108, 173, 615, 688
SalI GTCGAC 1 cut(s) 136
SaqAI TTAA 2 cut(s) 180, 414
SatI GCNGC 4 cut(s) 356, 423, 456, 501
Sau3AI GATC 7 cut(s) 28, 553, 702, 1006, 1202, 1335, 1350
Sau96I GGNCC 2 cut(s) 385, 1126
SchI GAGTC 2 cut(s) 899, 975
ScrFI CCNGG 6 cut(s) 383, 384, 777, 870, 975, 1355
SduI GDGCHC 4 cut(s) 263, 634, 911, 1280
SfaNI GCATC 1 cut(s) 295
SfcI CTRYAG 2 cut(s) 340, 618
SinI GGWCC 1 cut(s) 1126
SmaI CCCGGG 1 cut(s) 384
SmlI CTYRAG 1 cut(s) 1088
SmoI CTYRAG 1 cut(s) 1088
SrfI GCCCGGGC 1 cut(s) 384
Sse9I AATT 7 cut(s) 153, 426, 510, 645, 708, 962, 1227
SsiI CCGC 3 cut(s) 85, 263, 1025
SspI AATATT 3 cut(s) 103, 670, 1198
SspMI CTAG 1 cut(s) 1221
StyD4I CCNGG 6 cut(s) 381, 382, 775, 868, 973, 1353
StyI CCWWGG 1 cut(s) 1173
TaaI ACNGT 5 cut(s) 142, 172, 437, 619, 939
TaiI ACGT 2 cut(s) 123, 178
TaqI TCGA 4 cut(s) 5, 137, 762, 1317
TaqII GACCGA 1 cut(s) 744
TasI AATT 7 cut(s) 153, 426, 510, 645, 708, 962, 1227
TatI WGTACW 1 cut(s) 687
TfiI GAWTC 1 cut(s) 847
Tru1I TTAA 2 cut(s) 180, 414
Tru9I TTAA 2 cut(s) 180, 414
TscAI CASTG 3 cut(s) 942, 1308, 1331
TseFI GTSAC 2 cut(s) 46, 116
TseI GCWGC 4 cut(s) 355, 422, 455, 500
Tsp45I GTSAC 2 cut(s) 46, 116
TspDTI ATGAA 4 cut(s) 261, 362, 477, 715
TspMI CCCGGG 1 cut(s) 382
TspRI CASTG 3 cut(s) 942, 1308, 1331
VneI GTGCAC 3 cut(s) 630, 907, 1276
VpaK11BI GGWCC 1 cut(s) 1126
XceI RCATGY 1 cut(s) 365
XmaI CCCGGG 1 cut(s) 382
XmiI GTMKAC 1 cut(s) 137
XspI CTAG 1 cut(s) 1221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.