Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002169.1

Orthogroup ID

OG0002084

Physical Location & Seq

Genomic Coordinates Reverse (-)

29094 .. 30330

Gene Structure 1237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002169.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

atgtctcttaaacacaacattgtgcttcaaaacaaagttgaccttgtccgagagaaggcaatcgagcagcgagaggagatgaaggagtggtttcgtggcacggtagctgaagatgcaacaattgtgcctattgttgctcagctgaagtataatatcgatgtagtgaacgagtacattgtcaagaacatccccattccgaaaagggactttgcttcgcctccttatatgaggatcatacgttcctttgatgtcaacaaacccgggtttgggagtgatgacataaaaggtgctgtggctggtggaacccttcttaggggtgttttgaaactgaaccaattggtggaggttcgtcctggtcttgttgtcaaagacgagagggggaaattcttgaggtgcacgccattgtattccagaatagtttccttgcttgctgaggaaaacgagttacagtttgctgtgccaggaggtctgattggggttggcacaaccttggatcctgctttgactcgcggcgataaattggtgggtcaagtagttggtgatgttggctcactccctgatgtgtatgcacaacttgaggtgcactaccacatgacaaagggatcagctgagaagaaagggctatcaaagttaagcaagaatgacattgtgatgttaaatattggatccaaggctacagaagcaaaggttattgctgtgagggaaagtatggtgaaattgcgactcatcacatctccagtttgcacgaacataggtgacaaagtggcgatcagtcaaagaatcgagcagcataagccccggtatcttatcgcttggggcgagattacagctgggagaacactcgatgtcgaaccttgccctactttagtagctgaatccacaaatcagatgattataattgatgatgaatttcaagtttttactagtgatgtgttgattctcatctttatgtgcaacctcagaccatacaccttaaccgcattgttggcttaccgtattggtgaaatgctagctgctaatatattgacagatgataccgaactcatgaactcagttaatacagacaatttcaggttcaggttcttaaagaaaagcaaagcagtcatcttataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0003824 GO:0003924 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005850 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006810 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

GTP_EFTU GTP_EFTU_D2 eIF2_C

Protein Analysis

370

Amino Acids

41.15

Weight (kDa)

8.5

Isoelectric Point (pI)

35.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04170 AT1G04170 AT2G18720 AT2G18720 AT2G18720 AT4G18330
fragaria_vesca	FvH4_4g18420 FvH4_4g18420 FvH4_4g18420
malus_domestica	MD00G1127900.v1.1 MD16G1166900.v1.1
prunus_persica	Prupe.1G133900_v2.0.a1 Prupe.1G133900_v2.0.a1
pyrus_communis	pycom13g14270 pycom16g14090
rosa_chinensis	RchiOBHm_Chr3g0454951 RchiOBHm_Chr4g0422871 RchiOBHm_Chr4g0422891
rosa_laevigata	RLG00000007598 RLG00000025399
rosa_multiflora	Rmu_sc0000744.1_g000135 Rmu_sc0000830.1_g000040 Rmu_sc0001792.1_g000003 Rmu_sc0002169.1_g000007 Rmu_sc0012762.1_g000009
rosa_roxburghii	Rroxscaffold_5G00364730 Rroxscaffold_6G00424660 Rroxscaffold_7G00207260
rosa_rugosa	Rorug03G0003100 Rorug04G0182000 Rorug04G0182500
rosa_samantha	Rh3AG063000 Rh3BG064900 Rh3CG063800 Rh3DG064900 Rh4AG242400 Rh4AG242600 Rh4BG246000 Rh4BG246200 Rh4CG256400
rosa_wichuraiana	Rw0G015780 Rw0G018540 Rw3G004940 Rw4G020880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	896, 1111
AccB7I	CCANNNNNTGG	1 cut(s)	340
AccII	CGCG	1 cut(s)	510
AciI	CCGC	2 cut(s)	510, 978
AclWI	GGATC	6 cut(s)	239, 488, 501, 610, 660, 673
AcsI	RAATTY	2 cut(s)	383, 908
AcuI	CTGAAG	2 cut(s)	129, 164
AfaI	GTAC	1 cut(s)	173
AfiI	CCNNNNNNNGG	6 cut(s)	55, 266, 267, 312, 313, 340
AgsI	TTSAA	3 cut(s)	29, 325, 914
AhlI	ACTAGT	1 cut(s)	923
AjnI	CCWGG	2 cut(s)	352, 460
AloI	GAACNNNNNNTCC	2 cut(s)	223, 255
AluBI	AGCT	6 cut(s)	107, 142, 608, 830, 872, 1013
AluI	AGCT	6 cut(s)	107, 142, 608, 830, 872, 1013
Alw21I	GWGCWC	2 cut(s)	398, 585
Alw26I	GTCTC	1 cut(s)	9
Alw44I	GTGCAC	2 cut(s)	394, 581
AlwI	GGATC	6 cut(s)	239, 488, 501, 610, 660, 673
Ama87I	CYCGRG	1 cut(s)	260
ApaLI	GTGCAC	2 cut(s)	394, 581
ApeKI	GCWGC	3 cut(s)	67, 787, 1013
ApoI	RAATTY	2 cut(s)	383, 908
Asp700I	GAANNNNTTC	1 cut(s)	418
AsuC2I	CCSGG	3 cut(s)	261, 262, 799
AsuHPI	GGTGA	4 cut(s)	551, 724, 767, 1013
AsuNHI	GCTAGC	1 cut(s)	1009
AvaI	CYCGRG	1 cut(s)	260
BaeGI	GKGCMC	2 cut(s)	398, 585
BamHI	GGATCC	2 cut(s)	493, 665
Bbv12I	GWGCWC	2 cut(s)	398, 585
BbvCI	CCTCAGC	1 cut(s)	432
BbvI	GCAGC	3 cut(s)	79, 799, 1000
BciT130I	CCWGG	2 cut(s)	354, 462
BcnI	CCSGG	3 cut(s)	261, 262, 799
BcoDI	GTCTC	1 cut(s)	9
BcuI	ACTAGT	1 cut(s)	923
BfaI	CTAG	2 cut(s)	924, 1010
BfmI	CTRYAG	1 cut(s)	675
BisI	GCNGC	4 cut(s)	68, 511, 788, 1014
BlpI	GCTNAGC	1 cut(s)	138
BlsI	GCNGC	4 cut(s)	69, 512, 789, 1015
Bme1390I	CCNGG	5 cut(s)	261, 262, 354, 462, 799
BmeT110I	CYCGRG	1 cut(s)	260
BmiI	GGNNCC	3 cut(s)	304, 495, 667
BmrFI	CCNGG	5 cut(s)	261, 262, 354, 462, 799
BmsI	GCATC	1 cut(s)	103
BmtI	GCTAGC	1 cut(s)	1013
BpmI	CTGGAG	1 cut(s)	720
Bpu10I	CCTNAGC	1 cut(s)	432
Bpu1102I	GCTNAGC	1 cut(s)	138
BpuEI	CTTGAG	2 cut(s)	409, 596
BpuMI	CCSGG	3 cut(s)	261, 262, 799
Bsa29I	ATCGAT	1 cut(s)	156
BsaBI	GATNNNNATC	1 cut(s)	941
BsaJI	CCNNGG	4 cut(s)	260, 489, 669, 797
Bsc4I	CCNNNNNNNGG	6 cut(s)	55, 266, 267, 312, 313, 340
Bse1I	ACTGG	1 cut(s)	737
Bse8I	GATNNNNATC	1 cut(s)	941
BseBI	CCWGG	2 cut(s)	354, 462
BseCI	ATCGAT	1 cut(s)	156
BseDI	CCNNGG	4 cut(s)	260, 489, 669, 797
BseGI	GGATG	1 cut(s)	186
BseJI	GATNNNNATC	1 cut(s)	941
BseLI	CCNNNNNNNGG	6 cut(s)	55, 266, 267, 312, 313, 340
BseMII	CTCAG	5 cut(s)	152, 423, 600, 973, 1065
BseNI	ACTGG	1 cut(s)	737
BseRI	GAGGAG	1 cut(s)	89
BseSI	GKGCMC	2 cut(s)	398, 585
BseXI	GCAGC	3 cut(s)	79, 799, 1000
BseYI	CCCAGC	1 cut(s)	830
Bsh1236I	CGCG	1 cut(s)	510
BshVI	ATCGAT	1 cut(s)	156
BsiHKAI	GWGCWC	2 cut(s)	398, 585
BsiHKCI	CYCGRG	1 cut(s)	260
BsiSI	CCGG	2 cut(s)	261, 799
BslFI	GGGAC	1 cut(s)	218
BslI	CCNNNNNNNGG	6 cut(s)	55, 266, 267, 312, 313, 340
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	1 cut(s)	218
BsoBI	CYCGRG	1 cut(s)	260
Bsp1286I	GDGCHC	2 cut(s)	398, 585
Bsp143I	GATC	5 cut(s)	231, 493, 602, 665, 768
Bsp1720I	GCTNAGC	1 cut(s)	138
BspACI	CCGC	2 cut(s)	510, 978
BspCNI	CTCAG	5 cut(s)	151, 424, 601, 972, 1064
BspDI	ATCGAT	1 cut(s)	156
BspFNI	CGCG	1 cut(s)	510
BspHI	TCATGA	1 cut(s)	1044
BspLI	GGNNCC	3 cut(s)	304, 495, 667
BspOI	GCTAGC	1 cut(s)	1013
BspPI	GGATC	6 cut(s)	239, 488, 501, 610, 660, 673
BsrI	ACTGG	1 cut(s)	737
BssECI	CCNNGG	4 cut(s)	260, 489, 669, 797
BssMI	GATC	5 cut(s)	231, 493, 602, 665, 768
BssT1I	CCWWGG	2 cut(s)	489, 669
Bst2UI	CCWGG	2 cut(s)	354, 462
Bst4CI	ACNGT	3 cut(s)	103, 450, 995
BstC8I	GCNNGC	3 cut(s)	398, 429, 1011
BstDEI	CTNAG	6 cut(s)	138, 311, 432, 609, 959, 1051
BstF5I	GGATG	1 cut(s)	186
BstFNI	CGCG	1 cut(s)	510
BstKTI	GATC	5 cut(s)	234, 496, 605, 668, 771
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	5 cut(s)	231, 493, 602, 665, 768
BstMWI	GCNNNNNNNGC	4 cut(s)	113, 680, 793, 986
BstNI	CCWGG	2 cut(s)	354, 462
BstSCI	CCNGG	5 cut(s)	259, 260, 352, 460, 797
BstSFI	CTRYAG	1 cut(s)	675
BstSLI	GKGCMC	2 cut(s)	398, 585
BstUI	CGCG	1 cut(s)	510
BstV1I	GCAGC	3 cut(s)	79, 799, 1000
BstX2I	RGATCY	2 cut(s)	493, 665
BstYI	RGATCY	2 cut(s)	493, 665
Bsu15I	ATCGAT	1 cut(s)	156
BsuTUI	ATCGAT	1 cut(s)	156
BtsCI	GGATG	1 cut(s)	186
Cac8I	GCNNGC	3 cut(s)	398, 429, 1011
CciI	TCATGA	1 cut(s)	1044
Cfr9I	CCCGGG	1 cut(s)	260
ClaI	ATCGAT	1 cut(s)	156
Csp6I	GTAC	1 cut(s)	172
CviAII	CATG	2 cut(s)	592, 1045
CviQI	GTAC	1 cut(s)	172
DdeI	CTNAG	6 cut(s)	138, 311, 432, 609, 959, 1051
DpnI	GATC	5 cut(s)	233, 495, 604, 667, 770
DpnII	GATC	5 cut(s)	231, 493, 602, 665, 768
Eco130I	CCWWGG	2 cut(s)	489, 669
Eco57I	CTGAAG	2 cut(s)	129, 164
Eco88I	CYCGRG	1 cut(s)	260
EcoRII	CCWGG	2 cut(s)	352, 460
EcoT14I	CCWWGG	2 cut(s)	489, 669
ErhI	CCWWGG	2 cut(s)	489, 669
FaeI	CATG	2 cut(s)	595, 1048
FalI	AAGNNNNNCTT	2 cut(s)	27, 59
FaqI	GGGAC	1 cut(s)	218
FatI	CATG	2 cut(s)	591, 1044
Fnu4HI	GCNGC	4 cut(s)	68, 511, 788, 1014
FokI	GGATG	1 cut(s)	173
Fsp4HI	GCNGC	4 cut(s)	68, 511, 788, 1014
FspBI	CTAG	2 cut(s)	924, 1010
GluI	GCNGC	4 cut(s)	68, 511, 788, 1014
GsaI	CCCAGC	1 cut(s)	834
GsuI	CTGGAG	1 cut(s)	720
HapII	CCGG	2 cut(s)	261, 799
Hin1II	CATG	2 cut(s)	595, 1048
HincII	GTYRAC	2 cut(s)	40, 253
HindII	GTYRAC	2 cut(s)	40, 253
HinfI	GANTC	5 cut(s)	505, 723, 780, 875, 937
HpaII	CCGG	2 cut(s)	261, 799
HphI	GGTGA	4 cut(s)	551, 724, 767, 1013
Hpy166II	GTNNAC	5 cut(s)	40, 166, 253, 396, 583
Hpy188I	TCNGA	5 cut(s)	50, 198, 471, 888, 962
Hpy188III	TCNNGA	4 cut(s)	181, 388, 411, 1045
Hpy8I	GTNNAC	5 cut(s)	40, 166, 253, 396, 583
HpyAV	CCTTC	3 cut(s)	49, 76, 317
HpyCH4III	ACNGT	3 cut(s)	103, 450, 995
HpyCH4IV	ACGT	1 cut(s)	238
HpyCH4V	TGCA	6 cut(s)	116, 396, 569, 583, 744, 954
HpyF10VI	GCNNNNNNNGC	4 cut(s)	113, 680, 793, 986
HpyF3I	CTNAG	6 cut(s)	138, 311, 432, 609, 959, 1051
HpySE526I	ACGT	1 cut(s)	238
Hsp92II	CATG	2 cut(s)	595, 1048
Kzo9I	GATC	5 cut(s)	231, 493, 602, 665, 768
Lsp1109I	GCAGC	3 cut(s)	79, 799, 1000
LweI	GCATC	1 cut(s)	103
MaeI	CTAG	2 cut(s)	924, 1010
MaeII	ACGT	1 cut(s)	238
MaeIII	GTNAC	2 cut(s)	444, 755
MalI	GATC	5 cut(s)	233, 495, 604, 667, 770
MboI	GATC	5 cut(s)	231, 493, 602, 665, 768
MboII	GAAGA	2 cut(s)	122, 625
MfeI	CAATTG	2 cut(s)	120, 335
MflI	RGATCY	2 cut(s)	493, 665
MhlI	GDGCHC	2 cut(s)	398, 585
MluCI	AATT	8 cut(s)	120, 335, 383, 518, 716, 897, 908, 1066
MlyI	GAGTC	2 cut(s)	499, 717
MroXI	GAANNNNTTC	1 cut(s)	418
MseI	TTAA	6 cut(s)	9, 632, 656, 974, 1056, 1085
MslI	CAYNNNNRTG	2 cut(s)	650, 947
MspA1I	CMGCKG	3 cut(s)	142, 608, 830
MspI	CCGG	2 cut(s)	261, 799
MspR9I	CCNGG	5 cut(s)	261, 262, 354, 462, 799
MunI	CAATTG	2 cut(s)	120, 335
MvaI	CCWGG	2 cut(s)	354, 462
MvnI	CGCG	1 cut(s)	510
MwoI	GCNNNNNNNGC	4 cut(s)	113, 680, 793, 986
NciI	CCSGG	3 cut(s)	261, 262, 799
NdeII	GATC	5 cut(s)	231, 493, 602, 665, 768
NheI	GCTAGC	1 cut(s)	1009
NlaIII	CATG	2 cut(s)	595, 1048
NlaIV	GGNNCC	3 cut(s)	304, 495, 667
NmuCI	GTSAC	1 cut(s)	755
PagI	TCATGA	1 cut(s)	1044
PcsI	WCGNNNNNNNCGW	1 cut(s)	816
PdmI	GAANNNNTTC	1 cut(s)	418
PfeI	GAWTC	3 cut(s)	780, 875, 937
PflFI	GACNNNGTC	1 cut(s)	44
PflMI	CCANNNNNTGG	1 cut(s)	340
PkrI	GCNGC	4 cut(s)	69, 512, 789, 1015
PleI	GAGTC	2 cut(s)	499, 717
PpsI	GAGTC	2 cut(s)	499, 717
PsiI	TTATAA	2 cut(s)	896, 1111
Psp6I	CCWGG	2 cut(s)	352, 460
PspFI	CCCAGC	1 cut(s)	830
PspGI	CCWGG	2 cut(s)	352, 460
PspN4I	GGNNCC	3 cut(s)	304, 495, 667
PsuI	RGATCY	2 cut(s)	493, 665
PsyI	GACNNNGTC	1 cut(s)	44
PvuII	CAGCTG	3 cut(s)	142, 608, 830
RsaI	GTAC	1 cut(s)	173
RsaNI	GTAC	1 cut(s)	172
RseI	CAYNNNNRTG	2 cut(s)	650, 947
SaqAI	TTAA	6 cut(s)	9, 632, 656, 974, 1056, 1085
SatI	GCNGC	4 cut(s)	68, 511, 788, 1014
Sau3AI	GATC	5 cut(s)	231, 493, 602, 665, 768
SchI	GAGTC	2 cut(s)	499, 717
ScrFI	CCNGG	5 cut(s)	261, 262, 354, 462, 799
SduI	GDGCHC	2 cut(s)	398, 585
SfaNI	GCATC	1 cut(s)	103
SfcI	CTRYAG	1 cut(s)	675
SmaI	CCCGGG	1 cut(s)	262
SmiMI	CAYNNNNRTG	2 cut(s)	650, 947
SmlI	CTYRAG	2 cut(s)	388, 575
SmoI	CTYRAG	2 cut(s)	388, 575
SpeI	ACTAGT	1 cut(s)	923
Sse9I	AATT	8 cut(s)	120, 335, 383, 518, 716, 897, 908, 1066
SsiI	CCGC	2 cut(s)	510, 978
SspI	AATATT	1 cut(s)	661
SspMI	CTAG	2 cut(s)	924, 1010
StyD4I	CCNGG	5 cut(s)	259, 260, 352, 460, 797
StyI	CCWWGG	2 cut(s)	489, 669
TaaI	ACNGT	3 cut(s)	103, 450, 995
TaiI	ACGT	1 cut(s)	241
TaqI	TCGA	5 cut(s)	63, 156, 783, 843, 849
TasI	AATT	8 cut(s)	120, 335, 383, 518, 716, 897, 908, 1066
TatI	WGTACW	1 cut(s)	171
TauI	GCSGC	1 cut(s)	513
TfiI	GAWTC	3 cut(s)	780, 875, 937
Tru1I	TTAA	6 cut(s)	9, 632, 656, 974, 1056, 1085
Tru9I	TTAA	6 cut(s)	9, 632, 656, 974, 1056, 1085
TseFI	GTSAC	1 cut(s)	755
TseI	GCWGC	3 cut(s)	67, 787, 1013
Tsp45I	GTSAC	1 cut(s)	755
TspDTI	ATGAA	3 cut(s)	95, 921, 1061
TspMI	CCCGGG	1 cut(s)	260
Tth111I	GACNNNGTC	1 cut(s)	44
Van91I	CCANNNNNTGG	1 cut(s)	340
VneI	GTGCAC	2 cut(s)	394, 581
XapI	RAATTY	2 cut(s)	383, 908
XmaI	CCCGGG	1 cut(s)	260
XmnI	GAANNNNTTC	1 cut(s)	418
XspI	CTAG	2 cut(s)	924, 1010

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.