Rmu_sc0001792.1_g000003

Eukaryotic translation initiation factor 2 subunit

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001792.1
Physical Location & Seq
Forward (+)
6927 .. 8366
1440 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001792.1_g000003.1.cds

Sequence Viewer

Length: 1440 bp
atgtcaaagaacaagaataaaggcatcaaggaagatcttgccacaagagtgtcgaagatgaaggatttgatggctcaggatctgagcaaactggatctaactcagttagatccactctcgccggaagttatatctcgtcaggccacgatcaacattggcacaataggtcacgtggctcatggtaagtcaacggtggtcaaagcaatttcgggggttcagacagttcgtttcaaacaggagctggagcgcaacataactataaaaacaggatatgctaatgccaaaatttacaagtgcggtagctgcccccgacccgactgctacaagtcttatggcagtggaaaggaagacaatcctctctgtgaacggtgtgggagtcagatgagactggagagacatgtgtcctttgtagattgccccggtcacgaagcactaatggctactatgcttaatggtgcgtccattatggatggagcgttacttgttgtagctgctgacgaacagtttccccaagaacaaaccaaggagcatctggaagctgttgaaatcatgtctcttaaacacaacattgtgcttcaaaacaaagttgaccttgtccgagagaaggcaatcgagcagcgagaggagatgaaggagtggtttcgtggcacggtagctgaagatgcaacaattgtgcctattgttgctcagctgaagtataatatcgatgtagtgaacgagtacattgtcaagaacatccccattccgaaaagggactttgcttcgcctccttatatgaggatcatacgttcctttgatgtcaacaaacccgggtttgggagtgatgacataaaaggtgctgtggctggtggaacccttcttaggggtgttttgaaactgaaccaattggtggaggttcgtcctggtcttgttgtcaaagacgagagggggaaattcttgaggtgcacgccattgtattccagaatagtttccttgtttgctgaggaaaacgagttacagtttgctgtgccaggaggtctgattggggttggcacaaccttggatcctgctttgactcgcggcgataaattggtgggtcaagtagttggtgatgttggctcactccctgatgtgtatgaacaacttaaggtgcactaccacatgacaaagggatcagctgagaagaaagggctatcaaagttaagcaagaatgacattgtgatgttaaatattggatccaaggctacagaagcaaaggttattgctgtgagggaaagtatggtgaaattgcgactcatcacatctccagtttgcacgaacataggtgacaaagtggcgatcagtcaaagaatcgagcagcataagccccggtatcttatcgcttggggcgagattacagctgggagaacactcgatgtggaaccttgccctactttagtagctgactccacaaatcaataa

Protein Analysis

479

Amino Acids

52.77

Weight (kDa)

8.76

Isoelectric Point (pI)

37.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 889
AccII CGCG 1 cut(s) 1059
AciI CCGC 2 cut(s) 297, 1059
AclWI GGATC 9 cut(s) 87, 102, 104, 788, 1037, 1050, 1159, 1209, 1222
AcsI RAATTY 2 cut(s) 285, 932
AcuI CTGAAG 2 cut(s) 678, 713
AcvI CACGTG 1 cut(s) 172
AfaI GTAC 1 cut(s) 722
AfiI CCNNNNNNNGG 6 cut(s) 604, 815, 816, 861, 862, 889
AflII CTTAAG 1 cut(s) 1124
AflIII ACRYGT 1 cut(s) 397
AgsI TTSAA 4 cut(s) 232, 545, 578, 874
AjnI CCWGG 2 cut(s) 901, 1009
AleI CACNNNNGTG 1 cut(s) 47
AloI GAACNNNNNNTCC 2 cut(s) 772, 804
AluBI AGCT 9 cut(s) 241, 303, 491, 539, 656, 691, 1157, 1379, 1421
AluI AGCT 9 cut(s) 241, 303, 491, 539, 656, 691, 1157, 1379, 1421
Alw21I GWGCWC 2 cut(s) 947, 1134
Alw26I GTCTC 3 cut(s) 379, 388, 558
Alw44I GTGCAC 2 cut(s) 943, 1130
AlwI GGATC 9 cut(s) 87, 102, 104, 788, 1037, 1050, 1159, 1209, 1222
AlwNI CAGNNNCTG 2 cut(s) 82, 241
Ama87I CYCGRG 1 cut(s) 809
AoxI GGCC 1 cut(s) 141
ApaLI GTGCAC 2 cut(s) 943, 1130
ApeKI GCWGC 4 cut(s) 303, 491, 616, 1336
ApoI RAATTY 2 cut(s) 285, 932
Asp700I GAANNNNTTC 2 cut(s) 504, 967
AspLEI GCGC 1 cut(s) 249
AsuC2I CCSGG 4 cut(s) 420, 810, 811, 1348
AsuHPI GGTGA 3 cut(s) 1100, 1273, 1316
AvaI CYCGRG 1 cut(s) 809
BaeGI GKGCMC 2 cut(s) 947, 1134
BamHI GGATCC 2 cut(s) 1042, 1214
BbrPI CACGTG 1 cut(s) 172
BbsI GAAGAC 1 cut(s) 354
Bbv12I GWGCWC 2 cut(s) 947, 1134
BbvCI CCTCAGC 1 cut(s) 981
BbvI GCAGC 4 cut(s) 290, 478, 628, 1348
BccI CCATC 2 cut(s) 64, 464
BcgI CGANNNNNNTGC 2 cut(s) 300, 334
BciT130I CCWGG 2 cut(s) 903, 1011
BcnI CCSGG 4 cut(s) 420, 810, 811, 1348
BcoDI GTCTC 3 cut(s) 379, 388, 558
BfmI CTRYAG 1 cut(s) 1224
BfrI CTTAAG 1 cut(s) 1124
BglII AGATCT 1 cut(s) 34
BisI GCNGC 5 cut(s) 304, 492, 617, 1060, 1337
BlpI GCTNAGC 1 cut(s) 687
BlsI GCNGC 5 cut(s) 305, 493, 618, 1061, 1338
Bme1390I CCNGG 6 cut(s) 420, 810, 811, 903, 1011, 1348
BmeT110I CYCGRG 1 cut(s) 809
BmiI GGNNCC 4 cut(s) 853, 1044, 1216, 1401
BmrFI CCNGG 6 cut(s) 420, 810, 811, 903, 1011, 1348
BmsI GCATC 3 cut(s) 33, 538, 652
BoxI GACNNNNGTC 1 cut(s) 400
BpiI GAAGAC 1 cut(s) 354
BpmI CTGGAG 3 cut(s) 263, 410, 1269
Bpu10I CCTNAGC 2 cut(s) 75, 981
Bpu1102I GCTNAGC 1 cut(s) 687
BpuEI CTTGAG 1 cut(s) 958
BpuMI CCSGG 4 cut(s) 420, 810, 811, 1348
Bsa29I ATCGAT 1 cut(s) 705
BsaAI YACGTR 1 cut(s) 172
BsaJI CCNNGG 6 cut(s) 418, 522, 809, 1038, 1218, 1346
Bsc4I CCNNNNNNNGG 6 cut(s) 604, 815, 816, 861, 862, 889
Bse1I ACTGG 3 cut(s) 96, 393, 1286
BseBI CCWGG 2 cut(s) 903, 1011
BseCI ATCGAT 1 cut(s) 705
BseDI CCNNGG 6 cut(s) 418, 522, 809, 1038, 1218, 1346
BseGI GGATG 2 cut(s) 475, 735
BseLI CCNNNNNNNGG 6 cut(s) 604, 815, 816, 861, 862, 889
BseMII CTCAG 6 cut(s) 74, 89, 116, 701, 972, 1149
BseNI ACTGG 3 cut(s) 96, 393, 1286
BseRI GAGGAG 1 cut(s) 638
BseSI GKGCMC 2 cut(s) 947, 1134
BseXI GCAGC 4 cut(s) 290, 478, 628, 1348
BseYI CCCAGC 1 cut(s) 1379
Bsh1236I CGCG 1 cut(s) 1059
BshFI GGCC 1 cut(s) 143
BshVI ATCGAT 1 cut(s) 705
BsiHKAI GWGCWC 2 cut(s) 947, 1134
BsiHKCI CYCGRG 1 cut(s) 809
BsiSI CCGG 4 cut(s) 122, 420, 810, 1348
BslFI GGGAC 1 cut(s) 767
BslI CCNNNNNNNGG 6 cut(s) 604, 815, 816, 861, 862, 889
BsmAI GTCTC 3 cut(s) 379, 388, 558
BsmFI GGGAC 1 cut(s) 767
BsnI GGCC 1 cut(s) 143
BsoBI CYCGRG 1 cut(s) 809
Bsp1286I GDGCHC 2 cut(s) 947, 1134
Bsp1720I GCTNAGC 1 cut(s) 687
BspACI CCGC 2 cut(s) 297, 1059
BspANI GGCC 1 cut(s) 143
BspCNI CTCAG 6 cut(s) 75, 88, 115, 700, 973, 1150
BspDI ATCGAT 1 cut(s) 705
BspFNI CGCG 1 cut(s) 1059
BspLI GGNNCC 4 cut(s) 853, 1044, 1216, 1401
BspPI GGATC 9 cut(s) 87, 102, 104, 788, 1037, 1050, 1159, 1209, 1222
BspTI CTTAAG 1 cut(s) 1124
BsrI ACTGG 3 cut(s) 96, 393, 1286
BssECI CCNNGG 6 cut(s) 418, 522, 809, 1038, 1218, 1346
BssT1I CCWWGG 3 cut(s) 522, 1038, 1218
Bst2UI CCWGG 2 cut(s) 903, 1011
Bst4CI ACNGT 6 cut(s) 193, 223, 369, 504, 652, 999
BstAFI CTTAAG 1 cut(s) 1124
BstBAI YACGTR 1 cut(s) 172
BstC8I GCNNGC 1 cut(s) 947
BstDEI CTNAG 7 cut(s) 75, 83, 102, 687, 860, 981, 1158
BstF5I GGATG 2 cut(s) 475, 735
BstFNI CGCG 1 cut(s) 1059
BstHHI GCGC 1 cut(s) 249
BstMAI GTCTC 3 cut(s) 379, 388, 558
BstMWI GCNNNNNNNGC 5 cut(s) 303, 437, 662, 1229, 1342
BstNI CCWGG 2 cut(s) 903, 1011
BstNSI RCATGY 1 cut(s) 401
BstPAI GACNNNNGTC 1 cut(s) 400
BstSCI CCNGG 6 cut(s) 418, 808, 809, 901, 1009, 1346
BstSFI CTRYAG 1 cut(s) 1224
BstSLI GKGCMC 2 cut(s) 947, 1134
BstUI CGCG 1 cut(s) 1059
BstV1I GCAGC 4 cut(s) 290, 478, 628, 1348
BstV2I GAAGAC 1 cut(s) 354
BstX2I RGATCY 6 cut(s) 34, 79, 94, 109, 1042, 1214
BstYI RGATCY 6 cut(s) 34, 79, 94, 109, 1042, 1214
Bsu15I ATCGAT 1 cut(s) 705
BsuRI GGCC 1 cut(s) 143
BsuTUI ATCGAT 1 cut(s) 705
BtsCI GGATG 2 cut(s) 475, 735
BtsI GCAGTG 1 cut(s) 343
BtsIMutI CAGTG 1 cut(s) 343
Cac8I GCNNGC 1 cut(s) 947
CaiI CAGNNNCTG 2 cut(s) 82, 241
CfoI GCGC 1 cut(s) 249
Cfr9I CCCGGG 1 cut(s) 809
ClaI ATCGAT 1 cut(s) 705
CseI GACGC 1 cut(s) 447
Csp6I GTAC 1 cut(s) 721
CviAII CATG 4 cut(s) 179, 398, 550, 1141
CviQI GTAC 1 cut(s) 721
DdeI CTNAG 7 cut(s) 75, 83, 102, 687, 860, 981, 1158
Eco130I CCWWGG 3 cut(s) 522, 1038, 1218
Eco57I CTGAAG 2 cut(s) 678, 713
Eco72I CACGTG 1 cut(s) 172
Eco88I CYCGRG 1 cut(s) 809
EcoRII CCWGG 2 cut(s) 901, 1009
EcoT14I CCWWGG 3 cut(s) 522, 1038, 1218
ErhI CCWWGG 3 cut(s) 522, 1038, 1218
FaeI CATG 4 cut(s) 182, 401, 553, 1144
FalI AAGNNNNNCTT 2 cut(s) 576, 608
FaqI GGGAC 1 cut(s) 767
FatI CATG 4 cut(s) 178, 397, 549, 1140
Fnu4HI GCNGC 5 cut(s) 304, 492, 617, 1060, 1337
FokI GGATG 2 cut(s) 482, 722
Fsp4HI GCNGC 5 cut(s) 304, 492, 617, 1060, 1337
GlaI GCGC 1 cut(s) 248
GluI GCNGC 5 cut(s) 304, 492, 617, 1060, 1337
GsaI CCCAGC 1 cut(s) 1383
GsuI CTGGAG 3 cut(s) 263, 410, 1269
HaeIII GGCC 1 cut(s) 143
HapII CCGG 4 cut(s) 122, 420, 810, 1348
HgaI GACGC 1 cut(s) 447
HhaI GCGC 1 cut(s) 249
Hin1II CATG 4 cut(s) 182, 401, 553, 1144
Hin6I GCGC 1 cut(s) 247
HinP1I GCGC 1 cut(s) 247
HincII GTYRAC 3 cut(s) 189, 589, 802
HindII GTYRAC 3 cut(s) 189, 589, 802
HinfI GANTC 5 cut(s) 376, 1054, 1272, 1329, 1424
HpaII CCGG 4 cut(s) 122, 420, 810, 1348
HphI GGTGA 3 cut(s) 1100, 1273, 1316
Hpy166II GTNNAC 7 cut(s) 189, 365, 589, 715, 802, 945, 1132
Hpy188I TCNGA 6 cut(s) 84, 219, 381, 599, 747, 1020
Hpy188III TCNNGA 6 cut(s) 77, 425, 533, 730, 937, 960
Hpy8I GTNNAC 7 cut(s) 189, 365, 589, 715, 802, 945, 1132
HpyAV CCTTC 4 cut(s) 55, 598, 625, 866
HpyCH4III ACNGT 6 cut(s) 193, 223, 369, 504, 652, 999
HpyCH4IV ACGT 2 cut(s) 171, 787
HpyCH4V TGCA 4 cut(s) 665, 945, 1132, 1293
HpyF10VI GCNNNNNNNGC 5 cut(s) 303, 437, 662, 1229, 1342
HpyF3I CTNAG 7 cut(s) 75, 83, 102, 687, 860, 981, 1158
HpySE526I ACGT 2 cut(s) 171, 787
Hsp92II CATG 4 cut(s) 182, 401, 553, 1144
HspAI GCGC 1 cut(s) 247
LmnI GCTCC 4 cut(s) 238, 244, 473, 526
Lsp1109I GCAGC 4 cut(s) 290, 478, 628, 1348
LweI GCATC 3 cut(s) 33, 538, 652
MaeII ACGT 2 cut(s) 171, 787
MaeIII GTNAC 5 cut(s) 167, 422, 477, 993, 1304
MboII GAAGA 5 cut(s) 44, 67, 359, 671, 1174
MfeI CAATTG 2 cut(s) 669, 884
MflI RGATCY 6 cut(s) 34, 79, 94, 109, 1042, 1214
MhlI GDGCHC 2 cut(s) 947, 1134
MluCI AATT 7 cut(s) 204, 285, 669, 884, 932, 1067, 1265
MlyI GAGTC 4 cut(s) 385, 1048, 1266, 1418
MroXI GAANNNNTTC 2 cut(s) 504, 967
MseI TTAA 5 cut(s) 450, 558, 1125, 1181, 1205
MslI CAYNNNNRTG 2 cut(s) 47, 1199
MspA1I CMGCKG 3 cut(s) 691, 1157, 1379
MspCI CTTAAG 1 cut(s) 1124
MspI CCGG 4 cut(s) 122, 420, 810, 1348
MspR9I CCNGG 6 cut(s) 420, 810, 811, 903, 1011, 1348
MunI CAATTG 2 cut(s) 669, 884
MvaI CCWGG 2 cut(s) 903, 1011
MvnI CGCG 1 cut(s) 1059
MwoI GCNNNNNNNGC 5 cut(s) 303, 437, 662, 1229, 1342
NciI CCSGG 4 cut(s) 420, 810, 811, 1348
NlaIII CATG 4 cut(s) 182, 401, 553, 1144
NlaIV GGNNCC 4 cut(s) 853, 1044, 1216, 1401
NmuCI GTSAC 3 cut(s) 167, 422, 1304
NspI RCATGY 1 cut(s) 401
OliI CACNNNNGTG 1 cut(s) 47
PciI ACATGT 1 cut(s) 397
PcsI WCGNNNNNNNCGW 1 cut(s) 1365
PdmI GAANNNNTTC 2 cut(s) 504, 967
PfeI GAWTC 1 cut(s) 1329
PflFI GACNNNGTC 1 cut(s) 593
PflMI CCANNNNNTGG 1 cut(s) 889
PkrI GCNGC 5 cut(s) 305, 493, 618, 1061, 1338
PleI GAGTC 4 cut(s) 384, 1048, 1266, 1418
PmaCI CACGTG 1 cut(s) 172
PmlI CACGTG 1 cut(s) 172
PpsI GAGTC 4 cut(s) 384, 1048, 1266, 1418
Ppu21I YACGTR 1 cut(s) 172
PscI ACATGT 1 cut(s) 397
PshAI GACNNNNGTC 1 cut(s) 400
Psp6I CCWGG 2 cut(s) 901, 1009
PspCI CACGTG 1 cut(s) 172
PspFI CCCAGC 1 cut(s) 1379
PspGI CCWGG 2 cut(s) 901, 1009
PspN4I GGNNCC 4 cut(s) 853, 1044, 1216, 1401
PstNI CAGNNNCTG 2 cut(s) 82, 241
PsuI RGATCY 6 cut(s) 34, 79, 94, 109, 1042, 1214
PsyI GACNNNGTC 1 cut(s) 593
PvuII CAGCTG 3 cut(s) 691, 1157, 1379
RsaI GTAC 1 cut(s) 722
RsaNI GTAC 1 cut(s) 721
RseI CAYNNNNRTG 2 cut(s) 47, 1199
SaqAI TTAA 5 cut(s) 450, 558, 1125, 1181, 1205
SatI GCNGC 5 cut(s) 304, 492, 617, 1060, 1337
SchI GAGTC 4 cut(s) 385, 1048, 1266, 1418
ScrFI CCNGG 6 cut(s) 420, 810, 811, 903, 1011, 1348
SduI GDGCHC 2 cut(s) 947, 1134
SfaNI GCATC 3 cut(s) 33, 538, 652
SfcI CTRYAG 1 cut(s) 1224
SmaI CCCGGG 1 cut(s) 811
SmiMI CAYNNNNRTG 2 cut(s) 47, 1199
SmlI CTYRAG 2 cut(s) 937, 1124
SmoI CTYRAG 2 cut(s) 937, 1124
Sse9I AATT 7 cut(s) 204, 285, 669, 884, 932, 1067, 1265
SsiI CCGC 2 cut(s) 297, 1059
SspI AATATT 1 cut(s) 1210
StyD4I CCNGG 6 cut(s) 418, 808, 809, 901, 1009, 1346
StyI CCWWGG 3 cut(s) 522, 1038, 1218
TaaI ACNGT 6 cut(s) 193, 223, 369, 504, 652, 999
TaiI ACGT 2 cut(s) 174, 790
TaqI TCGA 5 cut(s) 53, 612, 705, 1332, 1392
TasI AATT 7 cut(s) 204, 285, 669, 884, 932, 1067, 1265
TatI WGTACW 1 cut(s) 720
TauI GCSGC 1 cut(s) 1062
TfiI GAWTC 1 cut(s) 1329
Tru1I TTAA 5 cut(s) 450, 558, 1125, 1181, 1205
Tru9I TTAA 5 cut(s) 450, 558, 1125, 1181, 1205
TscAI CASTG 1 cut(s) 343
TseFI GTSAC 3 cut(s) 167, 422, 1304
TseI GCWGC 4 cut(s) 303, 491, 616, 1336
Tsp45I GTSAC 3 cut(s) 167, 422, 1304
TspDTI ATGAA 3 cut(s) 74, 644, 1131
TspMI CCCGGG 1 cut(s) 809
TspRI CASTG 1 cut(s) 343
Tth111I GACNNNGTC 1 cut(s) 593
Van91I CCANNNNNTGG 1 cut(s) 889
Vha464I CTTAAG 1 cut(s) 1124
VneI GTGCAC 2 cut(s) 943, 1130
XapI RAATTY 2 cut(s) 285, 932
XceI RCATGY 1 cut(s) 401
XcmI CCANNNNNNNNNTGG 1 cut(s) 529
XmaI CCCGGG 1 cut(s) 809
XmnI GAANNNNTTC 2 cut(s) 504, 967
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.