AT1G04635

ribonuclease P MRP protein subunit POP5

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0007354
Physical Location & Seq
Forward (+)
1291300 .. 1292024
725 bp
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UTR
Exon/CDS
Intron
AT1G04635.1

Sequence Viewer

Length: 456 bp
ATGGTGGGATTTAAGAACAGATACATGTTAATGGAAGTTTTTCTGGATCCGGACAAGGATCTTCTCGGAGAAGGAACACCGATCATTCTTACACAATTCAATCTCTCGAAAGCAATCAAAGACAGTATCCTCGTCAATTTCGGCGAGTGTGGTCTAGGTTCGTCTCTCGGTTCCTTCCAAGTGAAATATGTGAATCCAATCACGAAGCTATGCATTGTAAGATCATCAAGAGAAGAACACAGACAAGTTTGGTTAGCAATCACATTGGTCAAAAGCATCGGAAACTGTCCGGTGATCTTAAACTTGCTCGATATTAGCGGTTGCATCAGAGCGTGTAGAGACACAGCCTTGAAGTGCGACAAGGAGAAGTTTGAGCAGTGTAGCAAAAGCTTGTCTGAAGAGGAGATTAGGCAGATGAATACTTCTCTTGAGAAGATCAAACTATTGGAAAACTGA

Protein Analysis

151

Amino Acids

17.02

Weight (kDa)

7.52

Isoelectric Point (pI)

31.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNase_P_Rpp14 PF01900 7 - 116 9.2e-30 Rpp14/Pop5 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 49
AciI CCGC 1 cut(s) 318
AclWI GGATC 3 cut(s) 41, 54, 66
AcuI CTGAAG 1 cut(s) 417
AflIII ACRYGT 1 cut(s) 24
AgsI TTSAA 2 cut(s) 100, 352
AluBI AGCT 2 cut(s) 208, 390
AluI AGCT 2 cut(s) 208, 390
Alw26I GTCTC 2 cut(s) 168, 333
AlwI GGATC 3 cut(s) 41, 54, 66
Aor13HI TCCGGA 1 cut(s) 49
Asp700I GAANNNNTTC 1 cut(s) 39
AsuHPI GGTGA 1 cut(s) 304
BamHI GGATCC 1 cut(s) 46
BciVI GTATCC 1 cut(s) 137
BcoDI GTCTC 2 cut(s) 168, 333
BfaI CTAG 1 cut(s) 155
BfuI GTATCC 1 cut(s) 137
BmiI GGNNCC 2 cut(s) 48, 172
BmsI GCATC 2 cut(s) 285, 333
BpuEI CTTGAG 1 cut(s) 449
BsaWI WCCGGW 2 cut(s) 49, 289
BseAI TCCGGA 1 cut(s) 49
BseRI GAGGAG 1 cut(s) 416
BsiSI CCGG 2 cut(s) 50, 290
BsmAI GTCTC 2 cut(s) 168, 333
BsmBI CGTCTC 1 cut(s) 168
Bsp13I TCCGGA 1 cut(s) 49
Bsp143I GATC 6 cut(s) 46, 58, 81, 221, 294, 435
BspACI CCGC 1 cut(s) 318
BspEI TCCGGA 1 cut(s) 49
BspLI GGNNCC 2 cut(s) 48, 172
BspPI GGATC 3 cut(s) 41, 54, 66
BssMI GATC 6 cut(s) 46, 58, 81, 221, 294, 435
Bst4CI ACNGT 2 cut(s) 125, 287
Bst6I CTCTTC 1 cut(s) 393
BstKTI GATC 6 cut(s) 49, 61, 84, 224, 297, 438
BstMAI GTCTC 2 cut(s) 168, 333
BstMBI GATC 6 cut(s) 46, 58, 81, 221, 294, 435
BstNSI RCATGY 1 cut(s) 28
BstX2I RGATCY 2 cut(s) 46, 58
BstYI RGATCY 2 cut(s) 46, 58
BsuI GTATCC 1 cut(s) 137
BtsI GCAGTG 1 cut(s) 383
BtsIMutI CAGTG 1 cut(s) 383
CviAII CATG 1 cut(s) 25
CviJI RGCY 3 cut(s) 208, 347, 390
CviKI_1 RGCY 3 cut(s) 208, 347, 390
DpnI GATC 6 cut(s) 48, 60, 83, 223, 296, 437
DpnII GATC 6 cut(s) 46, 58, 81, 221, 294, 435
Eam1104I CTCTTC 1 cut(s) 393
EarI CTCTTC 1 cut(s) 393
Eco57I CTGAAG 1 cut(s) 417
EcoT22I ATGCAT 1 cut(s) 215
Esp3I CGTCTC 1 cut(s) 168
FaeI CATG 1 cut(s) 28
FaiI YATR 3 cut(s) 26, 189, 211
FatI CATG 1 cut(s) 24
FspBI CTAG 1 cut(s) 155
HapII CCGG 2 cut(s) 50, 290
Hin1II CATG 1 cut(s) 28
HindIII AAGCTT 1 cut(s) 388
HinfI GANTC 1 cut(s) 193
HpaII CCGG 2 cut(s) 50, 290
HphI GGTGA 1 cut(s) 304
Hpy188I TCNGA 4 cut(s) 68, 281, 329, 397
Hpy188III TCNNGA 6 cut(s) 44, 50, 106, 202, 228, 428
HpyAV CCTTC 2 cut(s) 65, 184
HpyCH4III ACNGT 2 cut(s) 125, 287
HpyCH4V TGCA 2 cut(s) 213, 324
Hsp92II CATG 1 cut(s) 28
Kpn2I TCCGGA 1 cut(s) 49
Kzo9I GATC 6 cut(s) 46, 58, 81, 221, 294, 435
LpnPI CCDG 3 cut(s) 29, 63, 303
LweI GCATC 2 cut(s) 285, 333
MaeI CTAG 1 cut(s) 155
MalI GATC 6 cut(s) 48, 60, 83, 223, 296, 437
MboI GATC 6 cut(s) 46, 58, 81, 221, 294, 435
MboII GAAGA 4 cut(s) 53, 245, 410, 445
MflI RGATCY 2 cut(s) 46, 58
MluCI AATT 2 cut(s) 95, 136
MnlI CCTC 2 cut(s) 140, 394
Mph1103I ATGCAT 1 cut(s) 215
MroI TCCGGA 1 cut(s) 49
MroXI GAANNNNTTC 1 cut(s) 39
MseI TTAA 3 cut(s) 12, 29, 299
MslI CAYNNNNRTG 1 cut(s) 29
MspI CCGG 2 cut(s) 50, 290
NdeII GATC 6 cut(s) 46, 58, 81, 221, 294, 435
NlaIII CATG 1 cut(s) 28
NlaIV GGNNCC 2 cut(s) 48, 172
NsiI ATGCAT 1 cut(s) 215
NspI RCATGY 1 cut(s) 28
PciI ACATGT 1 cut(s) 24
PdmI GAANNNNTTC 1 cut(s) 39
PfeI GAWTC 1 cut(s) 193
PscI ACATGT 1 cut(s) 24
PspN4I GGNNCC 2 cut(s) 48, 172
PsuI RGATCY 2 cut(s) 46, 58
RseI CAYNNNNRTG 1 cut(s) 29
SaqAI TTAA 3 cut(s) 12, 29, 299
Sau3AI GATC 6 cut(s) 46, 58, 81, 221, 294, 435
SetI ASST 3 cut(s) 160, 210, 392
SfaNI GCATC 2 cut(s) 285, 333
SmiMI CAYNNNNRTG 1 cut(s) 29
SmlI CTYRAG 1 cut(s) 428
SmoI CTYRAG 1 cut(s) 428
Sse9I AATT 2 cut(s) 95, 136
SsiI CCGC 1 cut(s) 318
SspMI CTAG 1 cut(s) 155
TaaI ACNGT 2 cut(s) 125, 287
TaqI TCGA 2 cut(s) 107, 309
TasI AATT 2 cut(s) 95, 136
TfiI GAWTC 1 cut(s) 193
Tru1I TTAA 3 cut(s) 12, 29, 299
Tru9I TTAA 3 cut(s) 12, 29, 299
TscAI CASTG 1 cut(s) 383
TspDTI ATGAA 1 cut(s) 431
TspRI CASTG 1 cut(s) 383
XceI RCATGY 1 cut(s) 28
XmnI GAANNNNTTC 1 cut(s) 39
XspI CTAG 1 cut(s) 155
Zsp2I ATGCAT 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.