Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0007354

Physical Location & Seq

Genomic Coordinates Reverse (-)

36092482 .. 36093550

Gene Structure 1069 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1302900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGTGGGATTTAAGAATAGGTATATGGTAGTGGAGGTTATCTTGGATCCTAATAGAGAACTGGTGAGAAAAGATCCTGTTATCATTACCTCTTACAATGTTATGAAAGCTATCCGAGACAGCATTCTAGTAAATTTTGGGGAGTGCGGTCTGGCTTCGTCACTTGGATCATTCCAAGCTTCAAGGGATGAATATCAGAGAGTATGGGCTGCAACTACCATGGTCAGGAGTATTGCAGATTGCCCGGTTCTATTTAATTTGTTGGACCTAAGTGGAAGTATCAAAGCTTGTAATGAAACCGCATTGAAGTGTGATGAATCAAAATTTGAACAGTACAAGCTTGTTGTTGGATCTAATCTTTCGGCTCAAGATACTCAAAAAATGCAGTACTATCTTGACAAGATCAAAGGCCTCGAGCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009249 GO:0009987 GO:0010467 GO:0018065 GO:0018193 GO:0018205 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051604 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

RNase_P_Rpp14

Protein Analysis

141

Amino Acids

15.8

Weight (kDa)

6.57

Isoelectric Point (pI)

28.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_P_Rpp14	PF01900	7 - 101	2e-15	Rpp14/Pop5 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007354)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04635
fragaria_vesca	FvH4_7g33290
malus_domestica	MD01G1231100.v1.1 MD07G1302900.v1.1 MD07G1303100.v1.1
prunus_persica	Prupe.2G321800_v2.0.a1
pyrus_communis	pycom01g23910
rosa_chinensis	RchiOBHm_Chr1g0383271 RchiOBHm_Chr3g0479561
rosa_laevigata	RLG00000026117
rosa_multiflora	Rmu_sc0007173.1_g000022 Rmu_sc0014196.1_g000006 Rmu_sc0031164.1_g000002
rosa_roxburghii	Rroxscaffold_4G00277450
rosa_rugosa	Rorug01G0440000 Rorug01G0440100 Rorug01G0440200
rosa_samantha	Rh1AG465700 Rh1BG423100 Rh1CG436300 Rh1DG455800 Rh3AG227300 Rh3CG257700
rosa_wichuraiana	Rw1G040670 Rw3G020350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	147, 300
AclWI	GGATC	5 cut(s)	41, 54, 68, 175, 358
AcsI	RAATTY	2 cut(s)	133, 323
AfaI	GTAC	2 cut(s)	335, 389
AfiI	CCNNNNNNNGG	1 cut(s)	225
AgsI	TTSAA	3 cut(s)	183, 307, 329
AluBI	AGCT	4 cut(s)	110, 179, 287, 340
AluI	AGCT	4 cut(s)	110, 179, 287, 340
Alw21I	GWGCWC	1 cut(s)	420
Alw26I	GTCTC	1 cut(s)	111
AlwI	GGATC	5 cut(s)	41, 54, 68, 175, 358
Ama87I	CYCGRG	1 cut(s)	413
AoxI	GGCC	1 cut(s)	409
ApeKI	GCWGC	1 cut(s)	209
ApoI	RAATTY	2 cut(s)	133, 323
AspS9I	GGNCC	1 cut(s)	265
AsuC2I	CCSGG	1 cut(s)	245
AsuHPI	GGTGA	1 cut(s)	76
AvaI	CYCGRG	1 cut(s)	413
AvaII	GGWCC	1 cut(s)	265
BamHI	GGATCC	1 cut(s)	46
Bbv12I	GWGCWC	1 cut(s)	420
BbvI	GCAGC	1 cut(s)	196
BcnI	CCSGG	1 cut(s)	245
BcoDI	GTCTC	1 cut(s)	111
BfaI	CTAG	1 cut(s)	128
BisI	GCNGC	1 cut(s)	210
BlsI	GCNGC	1 cut(s)	211
BmcAI	AGTACT	1 cut(s)	389
Bme1390I	CCNGG	1 cut(s)	245
Bme18I	GGWCC	1 cut(s)	265
BmeT110I	CYCGRG	1 cut(s)	413
BmgT120I	GGNCC	1 cut(s)	265
BmiI	GGNNCC	1 cut(s)	48
BmrFI	CCNGG	1 cut(s)	245
BpuEI	CTTGAG	1 cut(s)	351
BpuMI	CCSGG	1 cut(s)	245
BsaBI	GATNNNNATC	1 cut(s)	192
BsaJI	CCNNGG	1 cut(s)	219
Bsc4I	CCNNNNNNNGG	1 cut(s)	225
Bse1I	ACTGG	1 cut(s)	66
Bse8I	GATNNNNATC	1 cut(s)	192
BseDI	CCNNGG	1 cut(s)	219
BseGI	GGATG	1 cut(s)	193
BseJI	GATNNNNATC	1 cut(s)	192
BseLI	CCNNNNNNNGG	1 cut(s)	225
BseNI	ACTGG	1 cut(s)	66
BseXI	GCAGC	1 cut(s)	196
BshFI	GGCC	1 cut(s)	411
BsiHKAI	GWGCWC	1 cut(s)	420
BsiHKCI	CYCGRG	1 cut(s)	413
BsiSI	CCGG	1 cut(s)	245
BslI	CCNNNNNNNGG	1 cut(s)	225
BsmAI	GTCTC	1 cut(s)	111
BsmI	GAATGC	1 cut(s)	123
BsnI	GGCC	1 cut(s)	411
BsoBI	CYCGRG	1 cut(s)	413
Bsp1286I	GDGCHC	1 cut(s)	420
Bsp143I	GATC	5 cut(s)	46, 73, 167, 350, 402
Bsp19I	CCATGG	1 cut(s)	219
BspACI	CCGC	2 cut(s)	147, 300
BspANI	GGCC	1 cut(s)	411
BspLI	GGNNCC	1 cut(s)	48
BspPI	GGATC	5 cut(s)	41, 54, 68, 175, 358
BsrI	ACTGG	1 cut(s)	66
BssECI	CCNNGG	1 cut(s)	219
BssMI	GATC	5 cut(s)	46, 73, 167, 350, 402
BssT1I	CCWWGG	1 cut(s)	219
Bst4CI	ACNGT	1 cut(s)	333
BstDEI	CTNAG	1 cut(s)	269
BstDSI	CCRYGG	1 cut(s)	219
BstF5I	GGATG	1 cut(s)	193
BstKTI	GATC	5 cut(s)	49, 76, 170, 353, 405
BstMAI	GTCTC	1 cut(s)	111
BstMBI	GATC	5 cut(s)	46, 73, 167, 350, 402
BstSCI	CCNGG	1 cut(s)	243
BstV1I	GCAGC	1 cut(s)	196
BstX2I	RGATCY	3 cut(s)	46, 73, 350
BstYI	RGATCY	3 cut(s)	46, 73, 350
BsuRI	GGCC	1 cut(s)	411
BtgI	CCRYGG	1 cut(s)	219
BtsCI	GGATG	1 cut(s)	193
Cfr13I	GGNCC	1 cut(s)	265
Csp6I	GTAC	2 cut(s)	334, 388
CviAII	CATG	1 cut(s)	220
CviJI	RGCY	8 cut(s)	110, 155, 179, 209, 287, 340, 365, 411
CviKI_1	RGCY	8 cut(s)	110, 155, 179, 209, 287, 340, 365, 411
CviQI	GTAC	2 cut(s)	334, 388
DdeI	CTNAG	1 cut(s)	269
DpnI	GATC	5 cut(s)	48, 75, 169, 352, 404
DpnII	GATC	5 cut(s)	46, 73, 167, 350, 402
Eco130I	CCWWGG	1 cut(s)	219
Eco147I	AGGCCT	1 cut(s)	411
Eco47I	GGWCC	1 cut(s)	265
Eco88I	CYCGRG	1 cut(s)	413
EcoT14I	CCWWGG	1 cut(s)	219
ErhI	CCWWGG	1 cut(s)	219
FaeI	CATG	1 cut(s)	223
FaiI	YATR	5 cut(s)	24, 26, 104, 205, 221
FatI	CATG	1 cut(s)	219
Fnu4HI	GCNGC	1 cut(s)	210
FokI	GGATG	1 cut(s)	200
Fsp4HI	GCNGC	1 cut(s)	210
FspBI	CTAG	1 cut(s)	128
GluI	GCNGC	1 cut(s)	210
HaeIII	GGCC	1 cut(s)	411
HapII	CCGG	1 cut(s)	245
Hin1II	CATG	1 cut(s)	223
HindIII	AAGCTT	3 cut(s)	177, 285, 338
HinfI	GANTC	1 cut(s)	317
HpaII	CCGG	1 cut(s)	245
HphI	GGTGA	1 cut(s)	76
Hpy188I	TCNGA	2 cut(s)	116, 198
Hpy188III	TCNNGA	3 cut(s)	226, 368, 395
HpyCH4III	ACNGT	1 cut(s)	333
HpyCH4V	TGCA	3 cut(s)	212, 236, 385
HpyF3I	CTNAG	1 cut(s)	269
Hsp92II	CATG	1 cut(s)	223
Kzo9I	GATC	5 cut(s)	46, 73, 167, 350, 402
LpnPI	CCDG	5 cut(s)	47, 90, 137, 211, 258
Lsp1109I	GCAGC	1 cut(s)	196
MaeI	CTAG	1 cut(s)	128
MaeIII	GTNAC	1 cut(s)	159
MalI	GATC	5 cut(s)	48, 75, 169, 352, 404
MboI	GATC	5 cut(s)	46, 73, 167, 350, 402
MflI	RGATCY	3 cut(s)	46, 73, 350
MhlI	GDGCHC	1 cut(s)	420
MluCI	AATT	3 cut(s)	133, 256, 323
MmeI	TCCRAC	2 cut(s)	243, 328
MnlI	CCTC	3 cut(s)	28, 100, 422
MseI	TTAA	2 cut(s)	12, 255
MslI	CAYNNNNRTG	1 cut(s)	307
MspI	CCGG	1 cut(s)	245
MspR9I	CCNGG	1 cut(s)	245
Mva1269I	GAATGC	1 cut(s)	123
NciI	CCSGG	1 cut(s)	245
NcoI	CCATGG	1 cut(s)	219
NdeII	GATC	5 cut(s)	46, 73, 167, 350, 402
NlaIII	CATG	1 cut(s)	223
NlaIV	GGNNCC	1 cut(s)	48
NmuCI	GTSAC	1 cut(s)	159
PaeR7I	CTCGAG	1 cut(s)	413
PceI	AGGCCT	1 cut(s)	411
PctI	GAATGC	1 cut(s)	123
PfeI	GAWTC	1 cut(s)	317
PkrI	GCNGC	1 cut(s)	211
PspN4I	GGNNCC	1 cut(s)	48
PspPI	GGNCC	1 cut(s)	265
PspXI	VCTCGAGB	1 cut(s)	413
PsuI	RGATCY	3 cut(s)	46, 73, 350
RsaI	GTAC	2 cut(s)	335, 389
RsaNI	GTAC	2 cut(s)	334, 388
RseI	CAYNNNNRTG	1 cut(s)	307
SaqAI	TTAA	2 cut(s)	12, 255
SatI	GCNGC	1 cut(s)	210
Sau3AI	GATC	5 cut(s)	46, 73, 167, 350, 402
Sau96I	GGNCC	1 cut(s)	265
ScaI	AGTACT	1 cut(s)	389
ScrFI	CCNGG	1 cut(s)	245
SduI	GDGCHC	1 cut(s)	420
SetI	ASST	8 cut(s)	23, 39, 92, 112, 181, 270, 289, 342
Sfr274I	CTCGAG	1 cut(s)	413
SinI	GGWCC	1 cut(s)	265
SlaI	CTCGAG	1 cut(s)	413
SmiMI	CAYNNNNRTG	1 cut(s)	307
SmlI	CTYRAG	2 cut(s)	366, 413
SmoI	CTYRAG	2 cut(s)	366, 413
Sse9I	AATT	3 cut(s)	133, 256, 323
SseBI	AGGCCT	1 cut(s)	411
SsiI	CCGC	2 cut(s)	147, 300
SspMI	CTAG	1 cut(s)	128
StuI	AGGCCT	1 cut(s)	411
StyD4I	CCNGG	1 cut(s)	243
StyI	CCWWGG	1 cut(s)	219
TaaI	ACNGT	1 cut(s)	333
TaqI	TCGA	1 cut(s)	414
TasI	AATT	3 cut(s)	133, 256, 323
TatI	WGTACW	2 cut(s)	333, 387
TfiI	GAWTC	1 cut(s)	317
Tru1I	TTAA	2 cut(s)	12, 255
Tru9I	TTAA	2 cut(s)	12, 255
TseFI	GTSAC	1 cut(s)	159
TseI	GCWGC	1 cut(s)	209
Tsp45I	GTSAC	1 cut(s)	159
TspDTI	ATGAA	4 cut(s)	119, 204, 309, 330
VpaK11BI	GGWCC	1 cut(s)	265
XapI	RAATTY	2 cut(s)	133, 323
XhoI	CTCGAG	1 cut(s)	413
XspI	CTAG	1 cut(s)	128
ZrmI	AGTACT	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.