Rh3CG257700

Ribonuclease P MRP protein subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0007354
Physical Location & Seq
Forward (+)
25165162 .. 25187688
22527 bp
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UTR
Exon/CDS
Intron
Rh3CG257700.1

Sequence Viewer

Length: 465 bp
ATGGTGGGATTTAAAAATAGGTACATGACATTGGAGGTTATCTTGGATCCGAATATAGAACTTGCAAAGAAAGATCATGTTATCATTACCACATATAATGTTACAAAAGCCATCAAGGATAGCATTCTTGTGAACTTTGGGGAGTGTGGTCTGGCTTCTTCACTTGGATCGTTCCAAGTGAAGTATGTCAATGGGATTACAAGGCTTTGTATCATAAGAGCTTCGAGGGAGGACCATCAAAAAGTATGGTCTGCTATTACCATGGTTAGGAGTATTGCTGGTTACCCGGTGATTTTTAATTTGTTGGACTTAACTGGAAGTATCAGAGCTTGTAAAATAGCTGCCTTGAAGTGTGATGAATTAAAATTTGAGCAGTACAAACTTGTGGTTAGATCTAATCTTTCAGCTCAAGATACTCAAAAGATGCAGTTCTATCTTGATAAGATCAAATGCTTGGAGCACTAA

Protein Analysis

154

Amino Acids

17.48

Weight (kDa)

9.1

Isoelectric Point (pI)

32.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNase_P_Rpp14 PF01900 7 - 115 3.6e-28 Rpp14/Pop5 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 41, 54, 175
AcsI RAATTY 1 cut(s) 365
AfaI GTAC 2 cut(s) 23, 377
AfiI CCNNNNNNNGG 1 cut(s) 267
AgsI TTSAA 1 cut(s) 349
AluBI AGCT 4 cut(s) 221, 329, 341, 407
AluI AGCT 4 cut(s) 221, 329, 341, 407
Alw21I GWGCWC 1 cut(s) 462
AlwI GGATC 3 cut(s) 41, 54, 175
ApeKI GCWGC 1 cut(s) 341
ApoI RAATTY 1 cut(s) 365
AspS9I GGNCC 1 cut(s) 232
AsuC2I CCSGG 1 cut(s) 287
AsuHPI GGTGA 1 cut(s) 301
AvaII GGWCC 1 cut(s) 232
BamHI GGATCC 1 cut(s) 46
Bbv12I GWGCWC 1 cut(s) 462
BbvI GCAGC 1 cut(s) 328
BccI CCATC 2 cut(s) 119, 243
BcnI CCSGG 1 cut(s) 287
BglII AGATCT 1 cut(s) 392
BisI GCNGC 1 cut(s) 342
BlsI GCNGC 1 cut(s) 343
Bme1390I CCNGG 1 cut(s) 287
Bme18I GGWCC 1 cut(s) 232
BmgT120I GGNCC 1 cut(s) 232
BmiI GGNNCC 1 cut(s) 48
BmrFI CCNGG 1 cut(s) 287
BmsI GCATC 1 cut(s) 414
BpuEI CTTGAG 1 cut(s) 393
BpuMI CCSGG 1 cut(s) 287
BsaJI CCNNGG 1 cut(s) 261
Bsc4I CCNNNNNNNGG 1 cut(s) 267
Bse1I ACTGG 1 cut(s) 319
BseDI CCNNGG 1 cut(s) 261
BseLI CCNNNNNNNGG 1 cut(s) 267
BseNI ACTGG 1 cut(s) 319
BseXI GCAGC 1 cut(s) 328
BsiHKAI GWGCWC 1 cut(s) 462
BsiSI CCGG 1 cut(s) 287
BslI CCNNNNNNNGG 1 cut(s) 267
BsmI GAATGC 1 cut(s) 123
Bsp1286I GDGCHC 1 cut(s) 462
Bsp143I GATC 5 cut(s) 46, 73, 167, 392, 444
Bsp19I CCATGG 1 cut(s) 261
BspLI GGNNCC 1 cut(s) 48
BspPI GGATC 3 cut(s) 41, 54, 175
BsrI ACTGG 1 cut(s) 319
BssECI CCNNGG 1 cut(s) 261
BssMI GATC 5 cut(s) 46, 73, 167, 392, 444
BssT1I CCWWGG 1 cut(s) 261
BstDSI CCRYGG 1 cut(s) 261
BstEII GGTNACC 1 cut(s) 281
BstKTI GATC 5 cut(s) 49, 76, 170, 395, 447
BstMBI GATC 5 cut(s) 46, 73, 167, 392, 444
BstPI GGTNACC 1 cut(s) 281
BstSCI CCNGG 1 cut(s) 285
BstV1I GCAGC 1 cut(s) 328
BstX2I RGATCY 2 cut(s) 46, 392
BstYI RGATCY 2 cut(s) 46, 392
BtgI CCRYGG 1 cut(s) 261
Cfr13I GGNCC 1 cut(s) 232
Csp6I GTAC 2 cut(s) 22, 376
CviAII CATG 3 cut(s) 25, 77, 262
CviJI RGCY 7 cut(s) 110, 155, 205, 221, 329, 341, 407
CviKI_1 RGCY 7 cut(s) 110, 155, 205, 221, 329, 341, 407
CviQI GTAC 2 cut(s) 22, 376
DpnI GATC 5 cut(s) 48, 75, 169, 394, 446
DpnII GATC 5 cut(s) 46, 73, 167, 392, 444
DraI TTTAAA 1 cut(s) 13
Eco130I CCWWGG 1 cut(s) 261
Eco47I GGWCC 1 cut(s) 232
Eco91I GGTNACC 1 cut(s) 281
EcoO65I GGTNACC 1 cut(s) 281
EcoT14I CCWWGG 1 cut(s) 261
ErhI CCWWGG 1 cut(s) 261
FaeI CATG 3 cut(s) 28, 80, 265
FaiI YATR 9 cut(s) 26, 56, 78, 94, 96, 186, 215, 247, 263
FatI CATG 3 cut(s) 24, 76, 261
Fnu4HI GCNGC 1 cut(s) 342
Fsp4HI GCNGC 1 cut(s) 342
GluI GCNGC 1 cut(s) 342
HapII CCGG 1 cut(s) 287
Hin1II CATG 3 cut(s) 28, 80, 265
HpaII CCGG 1 cut(s) 287
HphI GGTGA 1 cut(s) 301
Hpy166II GTNNAC 1 cut(s) 133
Hpy188I TCNGA 2 cut(s) 51, 326
Hpy188III TCNNGA 2 cut(s) 410, 437
Hpy8I GTNNAC 1 cut(s) 133
HpyCH4V TGCA 2 cut(s) 65, 427
Hsp92II CATG 3 cut(s) 28, 80, 265
Kzo9I GATC 5 cut(s) 46, 73, 167, 392, 444
LmnI GCTCC 1 cut(s) 457
LpnPI CCDG 4 cut(s) 137, 264, 300, 300
Lsp1109I GCAGC 1 cut(s) 328
LweI GCATC 1 cut(s) 414
MaeIII GTNAC 2 cut(s) 100, 281
MalI GATC 5 cut(s) 48, 75, 169, 394, 446
MboI GATC 5 cut(s) 46, 73, 167, 392, 444
MboII GAAGA 1 cut(s) 150
MflI RGATCY 2 cut(s) 46, 392
MhlI GDGCHC 1 cut(s) 462
MluCI AATT 3 cut(s) 298, 359, 365
MmeI TCCRAC 1 cut(s) 285
MnlI CCTC 3 cut(s) 28, 219, 223
MseI TTAA 4 cut(s) 12, 297, 311, 362
MslI CAYNNNNRTG 1 cut(s) 128
MspI CCGG 1 cut(s) 287
MspR9I CCNGG 1 cut(s) 287
Mva1269I GAATGC 1 cut(s) 123
NciI CCSGG 1 cut(s) 287
NcoI CCATGG 1 cut(s) 261
NdeII GATC 5 cut(s) 46, 73, 167, 392, 444
NlaIII CATG 3 cut(s) 28, 80, 265
NlaIV GGNNCC 1 cut(s) 48
PctI GAATGC 1 cut(s) 123
PkrI GCNGC 1 cut(s) 343
PspEI GGTNACC 1 cut(s) 281
PspN4I GGNNCC 1 cut(s) 48
PspPI GGNCC 1 cut(s) 232
PsuI RGATCY 2 cut(s) 46, 392
RsaI GTAC 2 cut(s) 23, 377
RsaNI GTAC 2 cut(s) 22, 376
RseI CAYNNNNRTG 1 cut(s) 128
SaqAI TTAA 4 cut(s) 12, 297, 311, 362
SatI GCNGC 1 cut(s) 342
Sau3AI GATC 5 cut(s) 46, 73, 167, 392, 444
Sau96I GGNCC 1 cut(s) 232
ScrFI CCNGG 1 cut(s) 287
SduI GDGCHC 1 cut(s) 462
SetI ASST 6 cut(s) 23, 39, 223, 331, 343, 409
SfaNI GCATC 1 cut(s) 414
SinI GGWCC 1 cut(s) 232
SmiMI CAYNNNNRTG 1 cut(s) 128
SmlI CTYRAG 1 cut(s) 408
SmoI CTYRAG 1 cut(s) 408
Sse9I AATT 3 cut(s) 298, 359, 365
StyD4I CCNGG 1 cut(s) 285
StyI CCWWGG 1 cut(s) 261
TaqI TCGA 1 cut(s) 224
TasI AATT 3 cut(s) 298, 359, 365
TatI WGTACW 1 cut(s) 375
Tru1I TTAA 4 cut(s) 12, 297, 311, 362
Tru9I TTAA 4 cut(s) 12, 297, 311, 362
TseI GCWGC 1 cut(s) 341
TspDTI ATGAA 1 cut(s) 372
VpaK11BI GGWCC 1 cut(s) 232
XapI RAATTY 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.