Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0007354

Physical Location & Seq

Genomic Coordinates Reverse (-)

68073213 .. 68077154

Gene Structure 3942 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG465700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGTGCAGGAGGCTGAACTCATTCCTGCTCTCACTCTCAAGCTCAATTCCAGCAATCAGGGTTTTGTTCCAGATTCACTCCCAATTCGATTTCCTTATACCCATCAGGGTTGAAGAATTTCACGAACACACTGTTCCTCTGTCTCGGATTTTGATTGGGTTTTGCAAAATTGAAGGAAAATCTTCCAATCAAGGTAAAGGATCATGGTGGGATTTAAAAATAGCCATCAAAGATAGCATTCTTGTGAACTTTGGGGAGTGTGGTCTGGCTTCTTCACTTGGATCGTTCCAAGTGAAGTATGTCAATGAGATTACAAGGCTTTGTATCATAAGAGCTTCGAGGGAGGACCATCAAAAAGTATGGTCTGCTATTACCATGGTCAGGAGTATTGCTGATTGCCCGGTGATTTTTAATTTGTTGGACTTAAGTGGAAGTATCAGAGCTTGTAAAACAGCTGCCTTGAAGTGTGATGAATTAAAATTTGAGCAGCACAAACTTGTGGTTGGATCTATTCTTTCAGCTCAAGATACTCAAAAGATGCAGTTCTATCTTGATAAGATCAAAAGCTTGGAGCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009249 GO:0009987 GO:0010467 GO:0018065 GO:0018193 GO:0018205 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051604 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

RNase_P_Rpp14

Protein Analysis

192

Amino Acids

21.74

Weight (kDa)

8.86

Isoelectric Point (pI)

36.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_P_Rpp14	PF01900	71 - 153	6e-26	Rpp14/Pop5 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0007354)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04635
fragaria_vesca	FvH4_7g33290
malus_domestica	MD01G1231100.v1.1 MD07G1302900.v1.1 MD07G1303100.v1.1
prunus_persica	Prupe.2G321800_v2.0.a1
pyrus_communis	pycom01g23910
rosa_chinensis	RchiOBHm_Chr1g0383271 RchiOBHm_Chr3g0479561
rosa_laevigata	RLG00000026117
rosa_multiflora	Rmu_sc0007173.1_g000022 Rmu_sc0014196.1_g000006 Rmu_sc0031164.1_g000002
rosa_roxburghii	Rroxscaffold_4G00277450
rosa_rugosa	Rorug01G0440000 Rorug01G0440100 Rorug01G0440200
rosa_samantha	Rh1AG465700 Rh1BG423100 Rh1CG436300 Rh1DG455800 Rh3AG227300 Rh3CG257700
rosa_wichuraiana	Rw1G040670 Rw3G020350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	208, 289, 514
AcsI	RAATTY	2 cut(s)	116, 479
AfiI	CCNNNNNNNGG	1 cut(s)	381
AflII	CTTAAG	1 cut(s)	424
AgsI	TTSAA	3 cut(s)	113, 173, 463
AluBI	AGCT	6 cut(s)	42, 335, 443, 455, 521, 567
AluI	AGCT	6 cut(s)	42, 335, 443, 455, 521, 567
Alw21I	GWGCWC	1 cut(s)	576
Alw26I	GTCTC	1 cut(s)	147
AlwI	GGATC	3 cut(s)	208, 289, 514
ApeKI	GCWGC	2 cut(s)	455, 487
ApoI	RAATTY	2 cut(s)	116, 479
Asp700I	GAANNNNTTC	3 cut(s)	20, 117, 181
AspS9I	GGNCC	1 cut(s)	346
AsuC2I	CCSGG	1 cut(s)	401
AsuHPI	GGTGA	1 cut(s)	415
AvaII	GGWCC	1 cut(s)	346
Bbv12I	GWGCWC	1 cut(s)	576
BbvI	GCAGC	2 cut(s)	442, 499
BccI	CCATC	3 cut(s)	110, 233, 357
BcnI	CCSGG	1 cut(s)	401
BcoDI	GTCTC	1 cut(s)	147
BfrI	CTTAAG	1 cut(s)	424
BisI	GCNGC	2 cut(s)	456, 488
BlsI	GCNGC	2 cut(s)	457, 489
Bme1390I	CCNGG	1 cut(s)	401
Bme18I	GGWCC	1 cut(s)	346
BmgT120I	GGNCC	1 cut(s)	346
BmrFI	CCNGG	1 cut(s)	401
BmsI	GCATC	1 cut(s)	528
BpuEI	CTTGAG	2 cut(s)	22, 507
BpuMI	CCSGG	1 cut(s)	401
BsaJI	CCNNGG	1 cut(s)	375
Bsc4I	CCNNNNNNNGG	1 cut(s)	381
BseDI	CCNNGG	1 cut(s)	375
BseLI	CCNNNNNNNGG	1 cut(s)	381
BseXI	GCAGC	2 cut(s)	442, 499
BsgI	GTGCAG	1 cut(s)	25
BsiHKAI	GWGCWC	1 cut(s)	576
BsiSI	CCGG	1 cut(s)	401
BslI	CCNNNNNNNGG	1 cut(s)	381
BsmAI	GTCTC	1 cut(s)	147
BsmI	GAATGC	1 cut(s)	237
Bsp1286I	GDGCHC	1 cut(s)	576
Bsp143I	GATC	4 cut(s)	200, 281, 506, 558
Bsp19I	CCATGG	1 cut(s)	375
BspPI	GGATC	3 cut(s)	208, 289, 514
BspTI	CTTAAG	1 cut(s)	424
BssECI	CCNNGG	1 cut(s)	375
BssMI	GATC	4 cut(s)	200, 281, 506, 558
BssT1I	CCWWGG	1 cut(s)	375
Bst4CI	ACNGT	1 cut(s)	133
BstAFI	CTTAAG	1 cut(s)	424
BstDSI	CCRYGG	1 cut(s)	375
BstKTI	GATC	4 cut(s)	203, 284, 509, 561
BstMAI	GTCTC	1 cut(s)	147
BstMBI	GATC	4 cut(s)	200, 281, 506, 558
BstSCI	CCNGG	1 cut(s)	399
BstV1I	GCAGC	2 cut(s)	442, 499
BstX2I	RGATCY	1 cut(s)	506
BstYI	RGATCY	1 cut(s)	506
BtgI	CCRYGG	1 cut(s)	375
BtsIMutI	CAGTG	1 cut(s)	129
Cfr13I	GGNCC	1 cut(s)	346
CviAII	CATG	2 cut(s)	204, 376
DpnI	GATC	4 cut(s)	202, 283, 508, 560
DpnII	GATC	4 cut(s)	200, 281, 506, 558
DraI	TTTAAA	1 cut(s)	216
Eco130I	CCWWGG	1 cut(s)	375
Eco47I	GGWCC	1 cut(s)	346
EcoT14I	CCWWGG	1 cut(s)	375
ErhI	CCWWGG	1 cut(s)	375
FaeI	CATG	2 cut(s)	207, 379
FaiI	YATR	6 cut(s)	98, 205, 300, 329, 361, 377
FatI	CATG	2 cut(s)	203, 375
Fnu4HI	GCNGC	2 cut(s)	456, 488
Fsp4HI	GCNGC	2 cut(s)	456, 488
GluI	GCNGC	2 cut(s)	456, 488
HapII	CCGG	1 cut(s)	401
Hin1II	CATG	2 cut(s)	207, 379
HindIII	AAGCTT	1 cut(s)	565
HinfI	GANTC	1 cut(s)	73
HpaII	CCGG	1 cut(s)	401
HphI	GGTGA	1 cut(s)	415
Hpy166II	GTNNAC	1 cut(s)	247
Hpy188I	TCNGA	2 cut(s)	147, 440
Hpy188III	TCNNGA	5 cut(s)	70, 122, 382, 524, 551
Hpy8I	GTNNAC	1 cut(s)	247
HpyAV	CCTTC	1 cut(s)	167
HpyCH4III	ACNGT	1 cut(s)	133
HpyCH4V	TGCA	3 cut(s)	6, 165, 541
Hsp92II	CATG	2 cut(s)	207, 379
Kzo9I	GATC	4 cut(s)	200, 281, 506, 558
LmnI	GCTCC	1 cut(s)	571
LpnPI	CCDG	8 cut(s)	38, 43, 63, 83, 91, 251, 367, 414
Lsp1109I	GCAGC	2 cut(s)	442, 499
LweI	GCATC	1 cut(s)	528
MalI	GATC	4 cut(s)	202, 283, 508, 560
MboI	GATC	4 cut(s)	200, 281, 506, 558
MboII	GAAGA	3 cut(s)	125, 174, 264
MflI	RGATCY	1 cut(s)	506
MhlI	GDGCHC	1 cut(s)	576
MluCI	AATT	7 cut(s)	45, 83, 116, 168, 412, 473, 479
MmeI	TCCRAC	2 cut(s)	399, 484
MnlI	CCTC	4 cut(s)	3, 147, 333, 337
MroXI	GAANNNNTTC	3 cut(s)	20, 117, 181
MseI	TTAA	4 cut(s)	215, 411, 425, 476
MslI	CAYNNNNRTG	1 cut(s)	242
MspA1I	CMGCKG	1 cut(s)	455
MspCI	CTTAAG	1 cut(s)	424
MspI	CCGG	1 cut(s)	401
MspR9I	CCNGG	1 cut(s)	401
Mva1269I	GAATGC	1 cut(s)	237
NciI	CCSGG	1 cut(s)	401
NcoI	CCATGG	1 cut(s)	375
NdeII	GATC	4 cut(s)	200, 281, 506, 558
NlaIII	CATG	2 cut(s)	207, 379
PctI	GAATGC	1 cut(s)	237
PdmI	GAANNNNTTC	3 cut(s)	20, 117, 181
PfeI	GAWTC	1 cut(s)	73
PkrI	GCNGC	2 cut(s)	457, 489
PspPI	GGNCC	1 cut(s)	346
PsuI	RGATCY	1 cut(s)	506
PvuII	CAGCTG	1 cut(s)	455
RseI	CAYNNNNRTG	1 cut(s)	242
SaqAI	TTAA	4 cut(s)	215, 411, 425, 476
SatI	GCNGC	2 cut(s)	456, 488
Sau3AI	GATC	4 cut(s)	200, 281, 506, 558
Sau96I	GGNCC	1 cut(s)	346
ScrFI	CCNGG	1 cut(s)	401
SduI	GDGCHC	1 cut(s)	576
SetI	ASST	7 cut(s)	44, 196, 337, 445, 457, 523, 569
SfaNI	GCATC	1 cut(s)	528
SinI	GGWCC	1 cut(s)	346
SmiMI	CAYNNNNRTG	1 cut(s)	242
SmlI	CTYRAG	3 cut(s)	37, 424, 522
SmoI	CTYRAG	3 cut(s)	37, 424, 522
Sse9I	AATT	7 cut(s)	45, 83, 116, 168, 412, 473, 479
StyD4I	CCNGG	1 cut(s)	399
StyI	CCWWGG	1 cut(s)	375
TaaI	ACNGT	1 cut(s)	133
TaqI	TCGA	2 cut(s)	87, 338
TasI	AATT	7 cut(s)	45, 83, 116, 168, 412, 473, 479
TfiI	GAWTC	1 cut(s)	73
Tru1I	TTAA	4 cut(s)	215, 411, 425, 476
Tru9I	TTAA	4 cut(s)	215, 411, 425, 476
TscAI	CASTG	1 cut(s)	136
TseI	GCWGC	2 cut(s)	455, 487
TspDTI	ATGAA	1 cut(s)	486
TspRI	CASTG	1 cut(s)	136
Vha464I	CTTAAG	1 cut(s)	424
VpaK11BI	GGWCC	1 cut(s)	346
XapI	RAATTY	2 cut(s)	116, 479
XmnI	GAANNNNTTC	3 cut(s)	20, 117, 181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.