Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0007354

Physical Location & Seq

Genomic Coordinates Reverse (-)

32023421 .. 32025361

Gene Structure 1941 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1231100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGTAGTGGAGGTTATCTTGGATTCTAATAGAGAACTGGTGAGAAAAGATCCTGTTATCATTACCTCGTACAATGTCATGAAAGCTATCCGAGACAGCATTCTGGTAAATTTTGGGGAGTGCGGTCTGGCTTCATCACTTGGATCATTCCAAGTCAAGTATGTGAATGACATTACGAGAATGTGTATCATTAGAGCTTCAAGGGATGAGTATCAGAAAGTGTGGGCTGCAATTACCATGGTCAGGAGTATTGCAGATTGCCCGGTTCTATTTAATTTGTTGGACCTAAGCGGAAGTATCAAAGCTTGTAAAGAAACCGCATTGAAGTGTGATGAATCAAAATTTGAACAGCACAAGCTGCTTGTTGGATCTAATCTGTCGGCTCAAGATACTCAAAAAATGCAGTACTATCTCGACAAGATCAAAGGCCTGGAGCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009249 GO:0009987 GO:0010467 GO:0018065 GO:0018193 GO:0018205 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051604 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

RNase_P_Rpp14

Protein Analysis

147

Amino Acids

16.48

Weight (kDa)

7.6

Isoelectric Point (pI)

28.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_P_Rpp14	PF01900	2 - 107	1.6e-28	Rpp14/Pop5 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007354)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04635
fragaria_vesca	FvH4_7g33290
malus_domestica	MD01G1231100.v1.1 MD07G1302900.v1.1 MD07G1303100.v1.1
prunus_persica	Prupe.2G321800_v2.0.a1
pyrus_communis	pycom01g23910
rosa_chinensis	RchiOBHm_Chr1g0383271 RchiOBHm_Chr3g0479561
rosa_laevigata	RLG00000026117
rosa_multiflora	Rmu_sc0007173.1_g000022 Rmu_sc0014196.1_g000006 Rmu_sc0031164.1_g000002
rosa_roxburghii	Rroxscaffold_4G00277450
rosa_rugosa	Rorug01G0440000 Rorug01G0440100 Rorug01G0440200
rosa_samantha	Rh1AG465700 Rh1BG423100 Rh1CG436300 Rh1DG455800 Rh3AG227300 Rh3CG257700
rosa_wichuraiana	Rw1G040670 Rw3G020350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	123, 291, 318
AclWI	GGATC	3 cut(s)	44, 151, 376
AcsI	RAATTY	2 cut(s)	109, 341
AfaI	GTAC	2 cut(s)	71, 407
AfiI	CCNNNNNNNGG	1 cut(s)	243
AgsI	TTSAA	3 cut(s)	201, 325, 347
AjnI	CCWGG	1 cut(s)	429
AluBI	AGCT	4 cut(s)	86, 197, 305, 358
AluI	AGCT	4 cut(s)	86, 197, 305, 358
Alw21I	GWGCWC	1 cut(s)	438
Alw26I	GTCTC	1 cut(s)	87
AlwI	GGATC	3 cut(s)	44, 151, 376
AoxI	GGCC	1 cut(s)	427
ApeKI	GCWGC	2 cut(s)	227, 358
ApoI	RAATTY	2 cut(s)	109, 341
AspS9I	GGNCC	1 cut(s)	283
AsuC2I	CCSGG	1 cut(s)	263
AsuHPI	GGTGA	1 cut(s)	52
AvaII	GGWCC	1 cut(s)	283
Bbv12I	GWGCWC	1 cut(s)	438
BbvI	GCAGC	2 cut(s)	214, 345
BciT130I	CCWGG	1 cut(s)	431
BcnI	CCSGG	1 cut(s)	263
BcoDI	GTCTC	1 cut(s)	87
BisI	GCNGC	2 cut(s)	228, 359
BlsI	GCNGC	2 cut(s)	229, 360
BmcAI	AGTACT	1 cut(s)	407
Bme1390I	CCNGG	2 cut(s)	263, 431
Bme18I	GGWCC	1 cut(s)	283
BmgT120I	GGNCC	1 cut(s)	283
BmrFI	CCNGG	2 cut(s)	263, 431
Bpu10I	CCTNAGC	1 cut(s)	287
BpuEI	CTTGAG	1 cut(s)	369
BpuMI	CCSGG	1 cut(s)	263
BsaBI	GATNNNNATC	1 cut(s)	210
BsaJI	CCNNGG	1 cut(s)	237
Bsc4I	CCNNNNNNNGG	1 cut(s)	243
Bse1I	ACTGG	1 cut(s)	42
Bse8I	GATNNNNATC	1 cut(s)	210
BseBI	CCWGG	1 cut(s)	431
BseDI	CCNNGG	1 cut(s)	237
BseGI	GGATG	1 cut(s)	211
BseJI	GATNNNNATC	1 cut(s)	210
BseLI	CCNNNNNNNGG	1 cut(s)	243
BseNI	ACTGG	1 cut(s)	42
BseXI	GCAGC	2 cut(s)	214, 345
BshFI	GGCC	1 cut(s)	429
BsiHKAI	GWGCWC	1 cut(s)	438
BsiSI	CCGG	1 cut(s)	263
BslI	CCNNNNNNNGG	1 cut(s)	243
BsmAI	GTCTC	1 cut(s)	87
BsmI	GAATGC	1 cut(s)	99
BsnI	GGCC	1 cut(s)	429
Bsp1286I	GDGCHC	1 cut(s)	438
Bsp143I	GATC	4 cut(s)	49, 143, 368, 420
Bsp19I	CCATGG	1 cut(s)	237
BspACI	CCGC	3 cut(s)	123, 291, 318
BspANI	GGCC	1 cut(s)	429
BspHI	TCATGA	1 cut(s)	78
BspPI	GGATC	3 cut(s)	44, 151, 376
BsrI	ACTGG	1 cut(s)	42
BssECI	CCNNGG	1 cut(s)	237
BssMI	GATC	4 cut(s)	49, 143, 368, 420
BssT1I	CCWWGG	1 cut(s)	237
Bst2UI	CCWGG	1 cut(s)	431
BstAPI	GCANNNNNTGC	1 cut(s)	358
BstDEI	CTNAG	1 cut(s)	287
BstDSI	CCRYGG	1 cut(s)	237
BstF5I	GGATG	1 cut(s)	211
BstKTI	GATC	4 cut(s)	52, 146, 371, 423
BstMAI	GTCTC	1 cut(s)	87
BstMBI	GATC	4 cut(s)	49, 143, 368, 420
BstMWI	GCNNNNNNNGC	1 cut(s)	358
BstNI	CCWGG	1 cut(s)	431
BstSCI	CCNGG	2 cut(s)	261, 429
BstV1I	GCAGC	2 cut(s)	214, 345
BstX2I	RGATCY	2 cut(s)	49, 368
BstYI	RGATCY	2 cut(s)	49, 368
BsuRI	GGCC	1 cut(s)	429
BtgI	CCRYGG	1 cut(s)	237
BtsCI	GGATG	1 cut(s)	211
CciI	TCATGA	1 cut(s)	78
Cfr13I	GGNCC	1 cut(s)	283
Csp6I	GTAC	2 cut(s)	70, 406
CviAII	CATG	2 cut(s)	79, 238
CviJI	RGCY	8 cut(s)	86, 131, 197, 227, 305, 358, 383, 429
CviKI_1	RGCY	8 cut(s)	86, 131, 197, 227, 305, 358, 383, 429
CviQI	GTAC	2 cut(s)	70, 406
DdeI	CTNAG	1 cut(s)	287
DpnI	GATC	4 cut(s)	51, 145, 370, 422
DpnII	GATC	4 cut(s)	49, 143, 368, 420
Eco130I	CCWWGG	1 cut(s)	237
Eco147I	AGGCCT	1 cut(s)	429
Eco47I	GGWCC	1 cut(s)	283
EcoRII	CCWGG	1 cut(s)	429
EcoT14I	CCWWGG	1 cut(s)	237
ErhI	CCWWGG	1 cut(s)	237
FaeI	CATG	2 cut(s)	82, 241
FaiI	YATR	3 cut(s)	80, 162, 239
FatI	CATG	2 cut(s)	78, 237
Fnu4HI	GCNGC	2 cut(s)	228, 359
FokI	GGATG	1 cut(s)	218
Fsp4HI	GCNGC	2 cut(s)	228, 359
GluI	GCNGC	2 cut(s)	228, 359
HaeIII	GGCC	1 cut(s)	429
HapII	CCGG	1 cut(s)	263
Hin1II	CATG	2 cut(s)	82, 241
HindIII	AAGCTT	1 cut(s)	303
HinfI	GANTC	2 cut(s)	23, 335
HpaII	CCGG	1 cut(s)	263
HphI	GGTGA	1 cut(s)	52
Hpy188I	TCNGA	2 cut(s)	92, 216
Hpy188III	TCNNGA	4 cut(s)	79, 244, 386, 413
HpyCH4V	TGCA	3 cut(s)	230, 254, 403
HpyF10VI	GCNNNNNNNGC	1 cut(s)	358
HpyF3I	CTNAG	1 cut(s)	287
Hsp92II	CATG	2 cut(s)	82, 241
Kzo9I	GATC	4 cut(s)	49, 143, 368, 420
LmnI	GCTCC	1 cut(s)	433
LpnPI	CCDG	7 cut(s)	23, 66, 89, 113, 229, 276, 416
Lsp1109I	GCAGC	2 cut(s)	214, 345
MalI	GATC	4 cut(s)	51, 145, 370, 422
MboI	GATC	4 cut(s)	49, 143, 368, 420
MflI	RGATCY	2 cut(s)	49, 368
MhlI	GDGCHC	1 cut(s)	438
MluCI	AATT	4 cut(s)	109, 231, 274, 341
MmeI	TCCRAC	2 cut(s)	261, 346
MnlI	CCTC	2 cut(s)	4, 76
MseI	TTAA	1 cut(s)	273
MslI	CAYNNNNRTG	1 cut(s)	325
MspI	CCGG	1 cut(s)	263
MspR9I	CCNGG	2 cut(s)	263, 431
Mva1269I	GAATGC	1 cut(s)	99
MvaI	CCWGG	1 cut(s)	431
MwoI	GCNNNNNNNGC	1 cut(s)	358
NciI	CCSGG	1 cut(s)	263
NcoI	CCATGG	1 cut(s)	237
NdeII	GATC	4 cut(s)	49, 143, 368, 420
NlaIII	CATG	2 cut(s)	82, 241
PagI	TCATGA	1 cut(s)	78
PceI	AGGCCT	1 cut(s)	429
PctI	GAATGC	1 cut(s)	99
PfeI	GAWTC	2 cut(s)	23, 335
PkrI	GCNGC	2 cut(s)	229, 360
Psp6I	CCWGG	1 cut(s)	429
PspGI	CCWGG	1 cut(s)	429
PspPI	GGNCC	1 cut(s)	283
PsuI	RGATCY	2 cut(s)	49, 368
RsaI	GTAC	2 cut(s)	71, 407
RsaNI	GTAC	2 cut(s)	70, 406
RseI	CAYNNNNRTG	1 cut(s)	325
SaqAI	TTAA	1 cut(s)	273
SatI	GCNGC	2 cut(s)	228, 359
Sau3AI	GATC	4 cut(s)	49, 143, 368, 420
Sau96I	GGNCC	1 cut(s)	283
ScaI	AGTACT	1 cut(s)	407
ScrFI	CCNGG	2 cut(s)	263, 431
SduI	GDGCHC	1 cut(s)	438
SetI	ASST	7 cut(s)	15, 68, 88, 199, 288, 307, 360
SinI	GGWCC	1 cut(s)	283
SmiMI	CAYNNNNRTG	1 cut(s)	325
SmlI	CTYRAG	1 cut(s)	384
SmoI	CTYRAG	1 cut(s)	384
Sse9I	AATT	4 cut(s)	109, 231, 274, 341
SseBI	AGGCCT	1 cut(s)	429
SsiI	CCGC	3 cut(s)	123, 291, 318
StuI	AGGCCT	1 cut(s)	429
StyD4I	CCNGG	2 cut(s)	261, 429
StyI	CCWWGG	1 cut(s)	237
TaqI	TCGA	1 cut(s)	414
TasI	AATT	4 cut(s)	109, 231, 274, 341
TatI	WGTACW	1 cut(s)	405
TfiI	GAWTC	2 cut(s)	23, 335
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TseI	GCWGC	2 cut(s)	227, 358
TspDTI	ATGAA	3 cut(s)	95, 123, 348
VpaK11BI	GGWCC	1 cut(s)	283
XapI	RAATTY	2 cut(s)	109, 341
ZrmI	AGTACT	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.